ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSH2_SCHPO (O74773) DNA mismatch repair protein msh2 29 5.1
2LDH_MYCGA (O52354) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH) 28 8.8

>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2|
          Length = 982

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/66 (19%), Positives = 35/66 (53%)
 Frame = +2

Query: 74  RNLERYIQYIHKRLHIDLKSPCPILL*YTTKNNILKKQVKVNQKENSLIQ*HKQIRSDYH 253
           +NLE+ I+ +   + ++       ++       +L  + ++++ ++S+ + HK++ SD H
Sbjct: 461 KNLEKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLH 520

Query: 254 IVRKKK 271
              +KK
Sbjct: 521 QDTEKK 526



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>LDH_MYCGA (O52354) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)|
          Length = 323

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -2

Query: 200 DSLSLVSLIYYF*LYIIEGLGMEISDQYASVCVY 99
           +S+SL++  Y + L  + G+G+++ D+Y +  +Y
Sbjct: 240 ESMSLITRAYIYNLNTVLGVGVQLDDKYVASGIY 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,016,257
Number of Sequences: 219361
Number of extensions: 1010346
Number of successful extensions: 2244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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