| Clone Name | rbags22b01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | MSH2_SCHPO (O74773) DNA mismatch repair protein msh2 | 29 | 5.1 | 2 | LDH_MYCGA (O52354) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH) | 28 | 8.8 |
|---|
>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2| Length = 982 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/66 (19%), Positives = 35/66 (53%) Frame = +2 Query: 74 RNLERYIQYIHKRLHIDLKSPCPILL*YTTKNNILKKQVKVNQKENSLIQ*HKQIRSDYH 253 +NLE+ I+ + + ++ ++ +L + ++++ ++S+ + HK++ SD H Sbjct: 461 KNLEKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLH 520 Query: 254 IVRKKK 271 +KK Sbjct: 521 QDTEKK 526
>LDH_MYCGA (O52354) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)| Length = 323 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/34 (29%), Positives = 23/34 (67%) Frame = -2 Query: 200 DSLSLVSLIYYF*LYIIEGLGMEISDQYASVCVY 99 +S+SL++ Y + L + G+G+++ D+Y + +Y Sbjct: 240 ESMSLITRAYIYNLNTVLGVGVQLDDKYVASGIY 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,016,257 Number of Sequences: 219361 Number of extensions: 1010346 Number of successful extensions: 2244 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2244 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)