ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21l19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THIK2_ARATH (Q56WD9) 3-ketoacyl-CoA thiolase 2, peroxisomal prec... 42 5e-04
2THIK5_ARATH (Q570C8) 3-ketoacyl-CoA thiolase 5, peroxisomal prec... 40 0.001
3THIK1_ARATH (Q8LF48) 3-ketoacyl-CoA thiolase 1, peroxisomal prec... 37 0.016
4BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9) 30 1.9
5ATG11_PICPA (Q9C438) Autophagy-related protein 11 (Glucose-induc... 28 7.3

>THIK2_ARATH (Q56WD9) 3-ketoacyl-CoA thiolase 2, peroxisomal precursor (EC|
           2.3.1.16) (Beta-ketothiolase 2) (Acetyl-CoA
           acyltransferase 2) (Peroxisomal 3-oxoacyl-CoA thiolase
           2) (Peroxisome defective protein 1)
          Length = 462

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = -2

Query: 98  IGSGXGAAXVFERGDAVDELTNARGV 21
           IG+G GAA VFERGD VDEL NAR V
Sbjct: 426 IGTGMGAAAVFERGDGVDELRNARKV 451



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>THIK5_ARATH (Q570C8) 3-ketoacyl-CoA thiolase 5, peroxisomal precursor (EC|
           2.3.1.16) (Beta-ketothiolase 5) (Acetyl-CoA
           acyltransferase 5) (Peroxisomal 3-oxoacyl-CoA thiolase
           5)
          Length = 457

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -2

Query: 98  IGSGXGAAXVFERGDAVDELTNAR 27
           IG+G GAA VFERGD+VD L+NAR
Sbjct: 427 IGTGMGAAAVFERGDSVDNLSNAR 450



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>THIK1_ARATH (Q8LF48) 3-ketoacyl-CoA thiolase 1, peroxisomal precursor (EC|
           2.3.1.16) (Beta-ketothiolase 1) (Acetyl-CoA
           acyltransferase 1) (Peroxisomal 3-oxoacyl-CoA thiolase
           1)
          Length = 443

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = -2

Query: 98  IGSGXGAAXVFERGDAVDELTNARGV 21
           IGSG GAA VFERG  VDEL + R V
Sbjct: 418 IGSGMGAAAVFERGGGVDELCDVRKV 443



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>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)|
          Length = 1425

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 1   KSQLSEGTPRAFVSSSTASPRSKTXA---APXPEPM 99
           KSQ S+ TP +   S+  +PRS T +    P PEP+
Sbjct: 132 KSQESQHTPHSMTPSTATAPRSSTPSHGQTPAPEPI 167



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>ATG11_PICPA (Q9C438) Autophagy-related protein 11 (Glucose-induced selective|
           autophagy protein 9) (Pexophagy zeocin-resistant mutant
           protein 6) (Fragment)
          Length = 1313

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 14  ARAPLGHSSAHPPHLHARKRXLH 82
           +RAP      HPPHL+A  + LH
Sbjct: 571 SRAPTPEHDPHPPHLNAINKLLH 593


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.299    0.112    0.298 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,846,436
Number of Sequences: 219361
Number of extensions: 151417
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 80,573,946
effective HSP length: 8
effective length of database: 78,819,058
effective search space used: 1891657392
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
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