ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21l19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196831.1| Oryza sativa (japonica cultivar-group) putative... 40 1.1
2dbj|AK072460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.1
3ref|XM_754014.1| Ustilago maydis 521 hypothetical protein (UM029... 38 4.4
4gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.4
5gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 gen... 38 4.4
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.4

>ref|NM_196831.1| Oryza sativa (japonica cultivar-group) putative thiolase
            (OSJNBa0018F16.7), mRNA
          Length = 1778

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 56/69 (81%)
 Strand = Plus / Minus

                                                                        
Query: 31   gcattcgtcagctcatccaccgcatctccacgctcgaaaacggnggctgcacccanncca 90
            ||||| || ||||||||||| ||||| |||||||| || || |  || || ||||  |||
Sbjct: 1421 gcattagtgagctcatccactgcatccccacgctcaaagacagcagcagcccccatgcca 1362

                     
Query: 91   gaacctatg 99
            |||||||||
Sbjct: 1361 gaacctatg 1353



to top

>dbj|AK072460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121H13, full
            insert sequence
          Length = 1808

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 56/69 (81%)
 Strand = Plus / Minus

                                                                        
Query: 31   gcattcgtcagctcatccaccgcatctccacgctcgaaaacggnggctgcacccanncca 90
            ||||| || ||||||||||| ||||| |||||||| || || |  || || ||||  |||
Sbjct: 1571 gcattagtgagctcatccactgcatccccacgctcaaagacagcagcagcccccatgcca 1512

                     
Query: 91   gaacctatg 99
            |||||||||
Sbjct: 1511 gaacctatg 1503



to top

>ref|XM_754014.1| Ustilago maydis 521 hypothetical protein (UM02960.1) partial mRNA
          Length = 1761

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 44  catccaccgcatctccacg 62
           |||||||||||||||||||
Sbjct: 84  catccaccgcatctccacg 102



to top

>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
              complete sequence
          Length = 179157

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                 
Query: 31     gcattcgtcagctcatccaccgcatctccacgctc 65
              ||||| || ||||||||||| ||||| ||||||||
Sbjct: 144023 gcattagtgagctcatccactgcatccccacgctc 143989



to top

>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
             sequence
          Length = 117157

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 31    gcattcgtcagctcatccaccgcatctccacgctc 65
             ||||| || ||||||||||| ||||| ||||||||
Sbjct: 92949 gcattagtgagctcatccactgcatccccacgctc 92983



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                   
Query: 31       gcattcgtcagctcatccaccgcatctccacgctc 65
                ||||| || ||||||||||| ||||| ||||||||
Sbjct: 16265134 gcattagtgagctcatccactgcatccccacgctc 16265100



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                   
Query: 31       gcattcgtcagctcatccaccgcatctccacgctc 65
                ||||| || ||||||||||| ||||| ||||||||
Sbjct: 16273375 gcattagtgagctcatccactgcatccccacgctc 16273341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 273,266
Number of Sequences: 3902068
Number of extensions: 273266
Number of successful extensions: 15324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15291
Number of HSP's gapped (non-prelim): 33
length of query: 99
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 78
effective length of database: 17,151,101,840
effective search space: 1337785943520
effective search space used: 1337785943520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top