ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 46 0.12
2ref|XM_668207.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.47
3ref|XM_670243.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.47
4gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complet... 42 1.8
5ref|XM_447593.1| Candida glabrata CBS138 hypothetical protein (C... 42 1.8
6gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6... 42 1.8
7emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on ch... 42 1.8
8emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 42 1.8
9gb|AC016142.22| Homo sapiens 3 BAC RP11-166N6 (Roswell Park Canc... 42 1.8
10gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
11gb|BC064145.1| Homo sapiens CDK5 regulatory subunit associated p... 40 7.3
12gb|AC005348.1| Homo sapiens chromosome 5, BAC clone 118L13 (LBNL... 40 7.3
13gb|AC153571.14| Mus musculus 10 BAC RP23-309H16 (Roswell Park Ca... 40 7.3
14gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, co... 40 7.3
15gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, comp... 40 7.3
16gb|AC162458.4| Mus musculus chromosome 19, clone RP24-140G9, com... 40 7.3
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
18gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, co... 40 7.3
19gb|AC124698.4| Mus musculus BAC clone RP24-180F7 from chromosome... 40 7.3
20gb|AC102779.6| Mus musculus chromosome 19, clone RP23-460A15, co... 40 7.3
21gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, comple... 40 7.3
22emb|AL136446.14| Human DNA sequence from clone RP3-446I19 on chr... 40 7.3
23emb|AL033521.2|HS444C7 Human DNA sequence from clone RP3-444C7 o... 40 7.3
24gb|AC162922.4| Mus musculus BAC clone RP23-314M6 from chromosome... 40 7.3
25gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.3
26gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, co... 40 7.3
27gb|AC087245.29| Homo sapiens 12 BAC RP11-208B19 (Roswell Park Ca... 40 7.3
28gb|AC100773.2| Homo sapiens chromosome 11, clone RP11-960D24, co... 40 7.3
29dbj|AK135087.1| Mus musculus adult male olfactory brain cDNA, RI... 40 7.3
30dbj|AK149138.1| Mus musculus 2 days neonate sympathetic ganglion... 40 7.3
31gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence 40 7.3
32dbj|AK171207.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.3
33gb|AC156021.2| Mus musculus BAC clone RP23-256A5 from chromosome... 40 7.3
34dbj|AK084682.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 7.3
35dbj|AK049991.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 7.3
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
37gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 7.3
38dbj|BS000050.1| Pan troglodytes chromosome 22 clone:RP43-038C12,... 40 7.3
39ref|XM_321111.2| Anopheles gambiae str. PEST ENSANGP00000018393 ... 40 7.3
40gb|U41534.2| Caenorhabditis elegans cosmid C16A3, complete sequence 40 7.3
41gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, co... 40 7.3
42emb|AL837508.21| Mouse DNA sequence from clone RP23-256C7 on chr... 40 7.3
43ref|NM_026144.2| Mus musculus dehydrodolichyl diphosphate syntha... 40 7.3
44emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in ... 40 7.3 
>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 284    ctgctttccctaaattatctctt 306
              |||||||||||||||||||||||
Sbjct: 164132 ctgctttccctaaattatctctt 164110
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>ref|XM_668207.1| Plasmodium berghei strain ANKA hypothetical protein (PB402791.00.0)
           partial mRNA
          Length = 144

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 303 tcttgtagcattgtttcatttt 324
           ||||||||||||||||||||||
Sbjct: 79  tcttgtagcattgtttcatttt 100
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>ref|XM_670243.1| Plasmodium berghei strain ANKA hypothetical protein (PB107959.00.0)
           partial mRNA
          Length = 144

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 303 tcttgtagcattgtttcatttt 324
           ||||||||||||||||||||||
Sbjct: 79  tcttgtagcattgtttcatttt 100
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>gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complete sequence
          Length = 154419

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 279   gccaactgctttccctaaattatct 303
             ||||||||||||||| |||||||||
Sbjct: 75321 gccaactgctttccccaaattatct 75297
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>ref|XM_447593.1| Candida glabrata CBS138 hypothetical protein (CAGL0I07909g) partial
            mRNA
          Length = 9111

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 291  ccctaaattatctcttgtagc 311
            |||||||||||||||||||||
Sbjct: 4914 ccctaaattatctcttgtagc 4934
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>gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete
              sequence
          Length = 250823

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 362    tactacaatatatttatcttt 382
              |||||||||||||||||||||
Sbjct: 150246 tactacaatatatttatcttt 150266
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>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3
              Contains the gene for a novel protein isentical to
              ribosomal protein L15 (RPL15), complete sequence
          Length = 190223

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 287    ctttccctaaattatctcttg 307
              |||||||||||||||||||||
Sbjct: 172830 ctttccctaaattatctcttg 172810
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    ccctaaattatctcttgtagc 311
              |||||||||||||||||||||
Sbjct: 768813 ccctaaattatctcttgtagc 768833
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>gb|AC016142.22| Homo sapiens 3 BAC RP11-166N6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 96959

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 305  ttgtagcattgtttcattttc 325
            |||||||||||||||||||||
Sbjct: 2849 ttgtagcattgtttcattttc 2869
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>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0085M22, complete sequence
          Length = 145104

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   gcaaatactacaatatattt 376
             ||||||||||||||||||||
Sbjct: 42318 gcaaatactacaatatattt 42299
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>gb|BC064145.1| Homo sapiens CDK5 regulatory subunit associated protein 1-like 1,
           mRNA (cDNA clone IMAGE:30379056), complete cds
          Length = 1741

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tgtggtgtgatgaacaaatc 110
           ||||||||||||||||||||
Sbjct: 660 tgtggtgtgatgaacaaatc 641
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>gb|AC005348.1| Homo sapiens chromosome 5, BAC clone 118L13 (LBNL H176), complete
             sequence
          Length = 84132

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    ctattaaccatattagacagatgg 56
             |||||| |||||||||||||||||
Sbjct: 28267 ctattatccatattagacagatgg 28290
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>gb|AC153571.14| Mus musculus 10 BAC RP23-309H16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184967

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    ctacaatcagaacaacaata 436
              ||||||||||||||||||||
Sbjct: 115496 ctacaatcagaacaacaata 115515
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>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence
          Length = 218224

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 513    gaatcaaagaaaagtgtgtttgca 536
              ||||||||| ||||||||||||||
Sbjct: 176681 gaatcaaaggaaagtgtgtttgca 176658
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>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence
          Length = 157809

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    tttatctttgataaaggtgg 393
              ||||||||||||||||||||
Sbjct: 114515 tttatctttgataaaggtgg 114496
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>gb|AC162458.4| Mus musculus chromosome 19, clone RP24-140G9, complete sequence
          Length = 212469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 493   atcacatcctaaataaaatcgaat 516
             ||||||||||||||||||| ||||
Sbjct: 45267 atcacatcctaaataaaatagaat 45290
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     gcaaatactacaatatattt 376
               ||||||||||||||||||||
Sbjct: 8418775 gcaaatactacaatatattt 8418756
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>gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, complete sequence
          Length = 177979

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   tgtgtttgaaaatcaacaag 184
             ||||||||||||||||||||
Sbjct: 41421 tgtgtttgaaaatcaacaag 41402
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>gb|AC124698.4| Mus musculus BAC clone RP24-180F7 from chromosome 3, complete sequence
          Length = 164187

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgactgatggcttcctcacc 245
             ||||||||||||||||||||
Sbjct: 84559 tgactgatggcttcctcacc 84578
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>gb|AC102779.6| Mus musculus chromosome 19, clone RP23-460A15, complete sequence
          Length = 214504

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 493   atcacatcctaaataaaatcgaat 516
             ||||||||||||||||||| ||||
Sbjct: 64407 atcacatcctaaataaaatagaat 64430
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>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence
          Length = 154325

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    tttatctttgataaaggtgg 393
              ||||||||||||||||||||
Sbjct: 147418 tttatctttgataaaggtgg 147437
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>emb|AL136446.14| Human DNA sequence from clone RP3-446I19 on chromosome 6 Contains part
             of a novel gene. Contains a CpG island, complete sequence
          Length = 109101

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttactattaaccatattaga 49
             ||||||||||||||||||||
Sbjct: 68479 ttactattaaccatattaga 68498
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>emb|AL033521.2|HS444C7 Human DNA sequence from clone RP3-444C7 on chromosome 6p22.3-23
             Contains the 5' end of a novel gene (FLJ20342), complete
             sequence
          Length = 128270

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgtggtgtgatgaacaaatc 110
             ||||||||||||||||||||
Sbjct: 92195 tgtggtgtgatgaacaaatc 92214
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>gb|AC162922.4| Mus musculus BAC clone RP23-314M6 from chromosome 3, complete sequence
          Length = 245207

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgactgatggcttcctcacc 245
             ||||||||||||||||||||
Sbjct: 58202 tgactgatggcttcctcacc 58221
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gatggccttgtccggatgcc 71
              ||||||||||||||||||||
Sbjct: 479398 gatggccttgtccggatgcc 479379
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>gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, complete sequence
          Length = 159274

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   aatatatttatctttgataa 387
             ||||||||||||||||||||
Sbjct: 93047 aatatatttatctttgataa 93028
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>gb|AC087245.29| Homo sapiens 12 BAC RP11-208B19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 93342

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   taaataaaatcgaatcaaag 521
             ||||||||||||||||||||
Sbjct: 25182 taaataaaatcgaatcaaag 25163
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>gb|AC100773.2| Homo sapiens chromosome 11, clone RP11-960D24, complete sequence
          Length = 199549

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   aattcatgcacacacattat 209
             ||||||||||||||||||||
Sbjct: 38687 aattcatgcacacacattat 38706
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>dbj|AK135087.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430582I10
            product:dehydrodolichyl diphosphate synthase, full insert
            sequence
          Length = 3176

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 3121 tgttagccagttgtgttatg 3140
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>dbj|AK149138.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120487O04
            product:dehydrodolichyl diphosphate synthase, full insert
            sequence
          Length = 3168

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 3091 tgttagccagttgtgttatg 3110
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>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence
          Length = 172798

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aaatcaacaagtaattaatt 193
             ||||||||||||||||||||
Sbjct: 46284 aaatcaacaagtaattaatt 46303
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>dbj|AK171207.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630308I08
            product:dehydrodolichyl diphosphate synthase, full insert
            sequence
          Length = 3190

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 3132 tgttagccagttgtgttatg 3151
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>gb|AC156021.2| Mus musculus BAC clone RP23-256A5 from chromosome 5, complete sequence
          Length = 217987

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 293    ctaaattatctcttgtagcattgtttca 320
              ||||| |||||| |||||||||||||||
Sbjct: 171074 ctaaagtatctcctgtagcattgtttca 171047
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>dbj|AK084682.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330029H05 product:CDNA FLJ13102 FIS,
            CLONE NT2RP3002303, WEAKLY SIMILAR TO PROBABLE
            UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (EC 2.5.1.31)
            homolog [Homo sapiens], full insert sequence
          Length = 2685

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 2635 tgttagccagttgtgttatg 2654
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>dbj|AK049991.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630037L16 product:CDNA FLJ13102 FIS,
            CLONE NT2RP3002303, WEAKLY SIMILAR TO PROBABLE
            UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (EC 2.5.1.31)
            homolog [Homo sapiens], full insert sequence
          Length = 3111

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 3060 tgttagccagttgtgttatg 3079
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     gcaaatactacaatatattt 376
               ||||||||||||||||||||
Sbjct: 8416610 gcaaatactacaatatattt 8416591
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>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aaaatcaacaagtaattaat 192
              ||||||||||||||||||||
Sbjct: 125749 aaaatcaacaagtaattaat 125768
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>dbj|BS000050.1| Pan troglodytes chromosome 22 clone:RP43-038C12, map 22, complete
             sequences
          Length = 202014

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   atactacaatatatttatct 380
             ||||||||||||||||||||
Sbjct: 46034 atactacaatatatttatct 46053
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>ref|XM_321111.2| Anopheles gambiae str. PEST ENSANGP00000018393
           (ENSANGG00000015904), partial mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 326 catctcctcattgtccgcccatcc 349
           |||||||||||| |||||||||||
Sbjct: 798 catctcctcattctccgcccatcc 775
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>gb|U41534.2| Caenorhabditis elegans cosmid C16A3, complete sequence
          Length = 34968

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   aataaaatcgaatcaaagaa 523
             ||||||||||||||||||||
Sbjct: 32580 aataaaatcgaatcaaagaa 32599
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>gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, complete sequence
          Length = 224562

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 513   gaatcaaagaaaagtgtgtttgca 536
             ||||||||| ||||||||||||||
Sbjct: 30315 gaatcaaaggaaagtgtgtttgca 30292
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>emb|AL837508.21| Mouse DNA sequence from clone RP23-256C7 on chromosome 4, complete
              sequence
          Length = 158009

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    tgttagccagttgtgttatg 147
              ||||||||||||||||||||
Sbjct: 145876 tgttagccagttgtgttatg 145857
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>ref|NM_026144.2| Mus musculus dehydrodolichyl diphosphate synthase (Dhdds), mRNA
          Length = 3111

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgttagccagttgtgttatg 147
            ||||||||||||||||||||
Sbjct: 3060 tgttagccagttgtgttatg 3079
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>emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in linkage group 1, complete
              sequence
          Length = 231898

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    atcacatcctaaataaaatc 512
              ||||||||||||||||||||
Sbjct: 103148 atcacatcctaaataaaatc 103167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,262,559
Number of Sequences: 3902068
Number of extensions: 6262559
Number of successful extensions: 139186
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139029
Number of HSP's gapped (non-prelim): 157
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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