ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22a09 |
|---|---|
| Clone Library Name | barley_pub |
>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog) Length = 2627 Score = 36.2 bits (82), Expect = 0.097 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%) Frame = +1 Query: 112 CHLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVW-----------QELDSAGYLTK 258 CHL Q+ M +RI + +++L + R W Q L++A L+ Sbjct: 612 CHLSRQ----QLRMAMRIPVLYEQLKREKLRVHKARQWKYDGEMLNRYRQALETAVNLSV 667 Query: 259 KCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGP 360 K SLP++P RT + D + +CP S +P+GP Sbjct: 668 KHSLPLLPGRTVLVYLTDANADRLCPKS-NPQGP 700
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 35.0 bits (79), Expect = 0.22 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Frame = +1 Query: 337 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQA----LAEWAMTRASKQAPP 504 PS P SR + ++A S++ AS S R+T A + + +R+ ++P Sbjct: 212 PSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVASYSSYSSRSRSRSRSRSPL 271 Query: 505 RHMRAGRSVMRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQSTWPSQ 642 H R+ RS RSR S + ++ + HS + S+ P +S PS+ Sbjct: 272 SHSRSSRSRSRSR---SRSRSRSRSPLSHSRSSRSRSPSRSRSPSR 314
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 33.9 bits (76), Expect = 0.48 Identities = 32/100 (32%), Positives = 40/100 (40%) Frame = +1 Query: 328 MCPPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPPR 507 M PP RH P RR R S+A + SS + S R + +S R Sbjct: 330 MPPPPRHRRSRSPGRRRRR-----SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR 384 Query: 508 HMRAGRSVMRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQS 627 + S R RH SS A P+ HSPT P+QS Sbjct: 385 RLSPSASPPRRRHRPSS-PATPPPKTRHSPT-----PQQS 418
>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor| (Polymorphic membrane protein I) Length = 878 Score = 33.1 bits (74), Expect = 0.82 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 6/146 (4%) Frame = +1 Query: 163 IMQNHALATKQQLLAPQHRVWQELDSAGYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPS 342 + QN++ T Q L + +A YL K L + +R +L F+ + S Sbjct: 313 LFQNNSQRTSDQGL---------VRNAIYLEKDAILSSLEARNGDIL----FFDPIVQES 359 Query: 343 RHPEGPQPSRR*CRVNTAT-STACPASECSSCTRST--GRQALAEWAMTR---ASKQAPP 504 E P PS V + T +TA P +S RS + L+E T S+ P Sbjct: 360 SSKESPLPSSLQASVTSPTPATASPLVIQTSANRSVIFSSERLSEEEKTPDNLTSQLQQP 419 Query: 505 RHMRAGRSVMRSRHLSSSAEAKQQPE 582 +++GR V++ R + S+ Q P+ Sbjct: 420 IELKSGRLVLKDRAVLSAPSLSQDPQ 445
>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 316 Score = 32.7 bits (73), Expect = 1.1 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Frame = +1 Query: 352 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPPRHMRAGRSV 531 EGP PS+R C + PA+ +S + + A A A A P R A R Sbjct: 2 EGPPPSKRPCGLPPGVRLVVPAAAAASASNAATAAAAAAPAGAGAGASKPARPSAAARPA 61 Query: 532 MRSRHLSSS-----AEAKQQPEQGHSPT*PSQCPEQSTWPS 639 + S++ A+A P +PT + E PS Sbjct: 62 KGTPAASAATTATGADASAPPPDPGAPTWDAFAAEFDVAPS 102
>PI4K_DICDI (P54677) Phosphatidylinositol 4-kinase (EC 2.7.1.67) (PI4-kinase)| (PtdIns-4-kinase) (PI4K-alpha) Length = 1093 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +1 Query: 265 SLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRS 444 SLP+ P+++ L L A+ PPS+ + P PS NT T+T + ++ T + Sbjct: 725 SLPVTPTQSTVLNNLISTSTAISPPSQQQQLPSPS------NTTTTTTTTTTNTNNTTTT 778 Query: 445 T 447 T Sbjct: 779 T 779
>VGLG_BRSVW (O10687) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Frame = +1 Query: 337 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP----- 501 P +P G P + S P CS+C + +L + RAS +AP Sbjct: 146 PPINPSGSNPPEN--HQDHNNSQTLPHVPCSTCEGNPACSSLCQIGPERASSRAPTITLK 203 Query: 502 --PRHMRAGRSVMRSRHLSSSAEAKQQPE 582 P+ + + H +S EAK QP+ Sbjct: 204 KTPKPKTTKKPTKTTIHRKTSPEAKPQPK 232
>O10T2_HUMAN (Q8NGX3) Olfactory receptor 10T2 (Olfactory receptor OR1-3)| Length = 314 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Frame = -2 Query: 287 LEGMMGREHFFVR*PAESSSCQTRCCGANSCCFVARAWFCMILTCISI-CIDGFDTTR*Q 111 L + G FF+ A + C R CG N +FC + I + C D Sbjct: 145 LISLSGATGFFIALVATNLICDMRFCGPNR----VNHYFCDMAPVIKLACTDTHVKELAL 200 Query: 110 FSAAFFQTILKPFLFLLCAFGLLV 39 FS + I+ PFL +L ++G +V Sbjct: 201 FSLSIL-VIMVPFLLILISYGFIV 223
>MATK_TRISM (Q8MCM3) Maturase K (Intron maturase)| Length = 509 Score = 31.2 bits (69), Expect = 3.1 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Frame = -3 Query: 541 VISSLNDLLACDA-AVPASKPLSWPTPRELDDL---------YCVYMKSIPKQDKLSRLQ 392 +I SL C+ P SKP+ W + D + C Y K+ L R++ Sbjct: 370 IIRSLAKAKFCNVLGHPISKPV-WADSSDFDIIERFLRICSNLCHYYHGSSKKKSLYRIK 428 Query: 391 YLLDISAEKAEDLRDAATAGTLPQTAGQEE 302 Y+L +S K + +T QT+G EE Sbjct: 429 YILRLSCIKTLACKHKSTVRAFLQTSGSEE 458
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 30.8 bits (68), Expect = 4.1 Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 23/142 (16%) Frame = +1 Query: 280 PSRTPTLLPLDLLFE---AMCPPSRH--PEGPQPSRR*CRVNTATSTACPASECSSCTRS 444 P P+ P L++ + PP+ P+GP S AT+T P S S T Sbjct: 1104 PLGPPSQAPPSLVYTVATSTTPPAATILPKGPPAS--------ATATPAPTSPFPSATAG 1155 Query: 445 TGRQALAEWAMTRASKQAPPRHMRA--------------GRSVMRSRHLSSSAEAKQ--- 573 + +L R S +AP + A GR R S S A++ Sbjct: 1156 SMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFESGTTGRPGSTPRQSSDSGVAREPAA 1215 Query: 574 -QPEQGHSPT*PSQCPEQSTWP 636 + E PT P+ P TWP Sbjct: 1216 PESELEGQPTPPAPPPPTETWP 1237
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 30.8 bits (68), Expect = 4.1 Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 10/131 (7%) Frame = +1 Query: 205 APQHRVWQELDSAGYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGP------QP 366 AP + + ++ Y LP+ PT PL L + P S P GP +P Sbjct: 423 APMYLTYPSIEQGRYGAHFTHLPLTQICPPTPEPLAL---SRSPSS--PSGPSAVHNQKP 477 Query: 367 SRR*CRVNTATSTACPASECSSCTRST----GRQALAEWAMTRASKQAPPRHMRAGRSVM 534 SR T S A P + T S+ R+ + A PP H + + Sbjct: 478 SRPGSSNGTVHSAASPTMVTTMATTSSTPTLSRRQRSRSATPTTPPPPPPAHSSSNGAYH 537 Query: 535 RSRHLSSSAEA 567 HL SS A Sbjct: 538 HGHHLVSSTAA 548
>NPHP4_MOUSE (P59240) Nephrocystin-4 (Nephroretinin)| Length = 1425 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 421 PKQDKLSRLQYLLDISAEKAEDLRDAATAGTLPQTAGQEEE 299 PK+ ++ + Q L D+ +E A L AG PQ AGQE + Sbjct: 868 PKRKRVVQAQRLADVDSELAAMLLTHTRAGQGPQAAGQEAD 908
>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 315 Score = 30.8 bits (68), Expect = 4.1 Identities = 26/94 (27%), Positives = 36/94 (38%) Frame = +1 Query: 352 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPPRHMRAGRSV 531 EGP PS+R C + PA+ S+ +T A A A A P R A R Sbjct: 2 EGPPPSKRPCGLPPGVRLVVPAAAASASNAATAAAAAAP-AGAGAGASKPARPPAAARPA 60 Query: 532 MRSRHLSSSAEAKQQPEQGHSPT*PSQCPEQSTW 633 + S++ A G + P+ P TW Sbjct: 61 KGTPAASAATTA-----TGADASAPAPDPGAPTW 89
>GAG_SMRVH (P21411) Gag polyprotein [Contains: Core protein p19; Core protein| p16; Probable core protein p35; Probable core protein p10] Length = 739 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Frame = +1 Query: 334 PPSRHPEGPQPSRR*CRVNTATSTACP--------ASECSSCTRSTGRQALAEWAMTRAS 489 PP++ P P + N +T CP ASEC S G+ + + + R Sbjct: 623 PPTQLPTQPNAPQASLIKNLGPTTKCPRCKKGFHWASECRSRLDINGQPIIKQGNLNRGQ 682 Query: 490 KQAPPRHMRAGRS 528 Q P M +G S Sbjct: 683 PQGPTTGMNSGAS 695
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 30.0 bits (66), Expect = 7.0 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 242 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 141 A +SSCQ CC SC + C C S+C Sbjct: 325 ASASSCQPSCCRTASCVSLLCRPMCSRPACYSLC 358
>CS016_HUMAN (Q8ND99) Protein C19orf16| Length = 567 Score = 29.6 bits (65), Expect = 9.1 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 13/128 (10%) Frame = +1 Query: 268 LPIIPSRT----PTLLPLDLLFEAMCPPSRHPEGPQPSRR*CRVNTATSTACPA----SE 423 LP +P+ + P L P A PP + P P PS++ V A S PA S Sbjct: 75 LPAVPASSWKPPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAV-PAPSQKAPAIPAPSR 133 Query: 424 CSSCTRSTGRQALAEWAMTRASKQAPPRHMRAGRSVMRSRHLSSSAEAKQQ-----PEQG 588 +S ++ R+A A A + K PP + + +S +A K+ P Q Sbjct: 134 KASAASASPRKASAVPAPPQ--KTPPPSQKAPSVPTIPQKAVSPTAPKKKSLLLPAPSQK 191 Query: 589 HSPT*PSQ 612 PT P+Q Sbjct: 192 ALPTSPTQ 199
>VGLG_BRSVR (P69350) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 257 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Frame = +1 Query: 337 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP----- 501 P +P G P + S P CS+C + +L + + RA +AP Sbjct: 146 PPINPSGSNPPEN--HQDHNNSQTLPYVPCSTCEGNLACSSLCQIGLERAPSRAPTITLK 203 Query: 502 --PRHMRAGRSVMRSRHLSSSAEAKQQPE 582 P+ + + H +S EAK QP+ Sbjct: 204 KAPKPKTTKKPTKTTIHHRTSPEAKLQPK 232
>VGLG_BRSVL (O09495) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 257 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Frame = +1 Query: 337 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP----- 501 P +P G P + S P CS+C + +L + + RA +AP Sbjct: 146 PPINPSGSNPPEN--HQDHNNSQTLPYVPCSTCEGNLACSSLCQIGLERAPSRAPTITLK 203 Query: 502 --PRHMRAGRSVMRSRHLSSSAEAKQQPE 582 P+ + + H +S EAK QP+ Sbjct: 204 KAPKPKTTKKPTKTTIHHRTSPEAKLQPK 232
>VGLG_BRSV9 (P69351) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 257 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Frame = +1 Query: 337 PSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP----- 501 P +P G P + S P CS+C + +L + + RA +AP Sbjct: 146 PPINPSGSNPPEN--HQDHNNSQTLPYVPCSTCEGNLACSSLCQIGLERAPSRAPTITLK 203 Query: 502 --PRHMRAGRSVMRSRHLSSSAEAKQQPE 582 P+ + + H +S EAK QP+ Sbjct: 204 KAPKPKTTKKPTKTTIHHRTSPEAKLQPK 232
>M3K13_HUMAN (O43283) Mitogen-activated protein kinase kinase kinase 13 (EC| 2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine zipper-bearing kinase) Length = 966 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/88 (25%), Positives = 34/88 (38%) Frame = +1 Query: 382 RVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPPRHMRAGRSVMRSRHLSSSA 561 R + S P +E + + +++ ++ PRH R R H +A Sbjct: 548 RPDLLRSEGIPTTEVAPTASPLSGSPKMSTSSSKSRYRSKPRHRRGNS---RGSHSDFAA 604 Query: 562 EAKQQPEQGHSPT*PSQCPEQSTWPSQH 645 K QP Q +SP QS +PS H Sbjct: 605 ILKNQPAQENSPHPTYLHQAQSQYPSLH 632
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 9.1 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 199 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 357 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 358 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 501 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 9.1 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 199 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 357 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 358 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 501 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 9.1 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 199 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 357 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 358 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 501 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated| protein 10.10) (High sulfur keratin-associated protein 10.10) (Keratin-associated protein 18-10) (Keratin-associated protein 18.10) Length = 251 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 242 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 141 A +SSCQ CC SC + C C S+C Sbjct: 211 ASASSCQPSCCRTASCVSLLCRPVCSRPACYSLC 244
>MARK4_MOUSE (Q8CIP4) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| Length = 752 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 450 SSSSRGVGHDKGFEAGTAASHASRSFSDEITPS 548 +SSS+G H+KG A ++ H R SD PS Sbjct: 397 TSSSKGSSHNKGQRASSSTYHRQRRHSDFCGPS 429 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,309,178 Number of Sequences: 219361 Number of extensions: 2054718 Number of successful extensions: 7829 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 7190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7800 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
