ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469416.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 82 2e-12
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 2e-12
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AK100005.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
6dbj|AK068293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7dbj|AK060273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
8gb|AY106586.1| Zea mays PCO088725 mRNA sequence 58 2e-05
9gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete seq... 52 0.001
10gb|AC110180.10| Mus musculus chromosome 19, clone RP24-358B11, c... 42 1.4
11gb|AF543212.1| Potato virus A isolate U infectious clone 1, comp... 40 5.4
12gb|AC124729.4| Mus musculus BAC clone RP23-479H9 from chromosome... 40 5.4
13gb|AF543709.1| Potato virus A isolate U clone 2, complete genome 40 5.4
14gb|U56964.1| Caenorhabditis elegans cosmid F52E4, complete sequence 40 5.4
15emb|AL954650.8| Human DNA sequence from clone RP11-523M19 on chr... 40 5.4
16emb|AL136081.10| Human DNA sequence from clone RP5-886K12 on chr... 40 5.4
17emb|Z21670.1|PVCGA Potato virus A complete genome 40 5.4
18emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 5.4
19emb|AJ296311.1|POA296311 Potato A potyvirus mRNA for polyprotein 40 5.4
20emb|AJ131402.1|PVI131402 Potato virus A RNA complete genome, iso... 40 5.4
21emb|AJ131401.1|PVI131401 Potato virus A RNA complete genome, iso... 40 5.4
22emb|BX510312.7| Zebrafish DNA sequence from clone CH211-240B21 i... 40 5.4
23ref|NM_076128.2| Caenorhabditis elegans WaRThog (hedgehog-like f... 40 5.4
24dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.4
25emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromo... 40 5.4 
>ref|XM_469416.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3801

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
            |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 3479 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 3420

                                                             
Query: 357  gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
            || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 3419 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 3371



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                        
Query: 124  tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
            |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 3636 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 3578

                                         
Query: 184  acacaaaccccagcaacccatgcacaaaa 212
             ||||||| |||| |||||| ||||||||
Sbjct: 3577 -cacaaactccaggaacccaagcacaaaa 3550
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                         
Query: 297   agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
             |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 89562 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 89503

                                                              
Query: 357   gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
             || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 89502 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 89454



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                         
Query: 124   tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
             |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 89719 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 89661

                                          
Query: 184   acacaaaccccagcaacccatgcacaaaa 212
              ||||||| |||| |||||| ||||||||
Sbjct: 89660 -cacaaactccaggaacccaagcacaaaa 89633
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                            
Query: 297      agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
                |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 27845432 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 27845373

                                                                 
Query: 357      gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
                || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 27845372 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 27845324



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                            
Query: 124      tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
                |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 27845589 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 27845531

                                             
Query: 184      acacaaaccccagcaacccatgcacaaaa 212
                 ||||||| |||| |||||| ||||||||
Sbjct: 27845530 -cacaaactccaggaacccaagcacaaaa 27845503
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                            
Query: 297      agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
                |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 27936756 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 27936697

                                                                 
Query: 357      gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
                || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 27936696 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 27936648



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                            
Query: 124      tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
                |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 27936913 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 27936855

                                             
Query: 184      acacaaaccccagcaacccatgcacaaaa 212
                 ||||||| |||| |||||| ||||||||
Sbjct: 27936854 -cacaaactccaggaacccaagcacaaaa 27936827
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>dbj|AK100005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135O16, full
            insert sequence
          Length = 3799

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
            |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 3477 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 3418

                                                             
Query: 357  gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
            || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 3417 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 3369



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                        
Query: 124  tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
            |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 3634 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 3576

                                         
Query: 184  acacaaaccccagcaacccatgcacaaaa 212
             ||||||| |||| |||||| ||||||||
Sbjct: 3575 -cacaaactccaggaacccaagcacaaaa 3548
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>dbj|AK068293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151J12, full
            insert sequence
          Length = 3797

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
            |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 3480 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 3421

                                                             
Query: 357  gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
            || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 3420 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 3372



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                        
Query: 124  tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
            |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 3637 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 3579

                                         
Query: 184  acacaaaccccagcaacccatgcacaaaa 212
             ||||||| |||| |||||| ||||||||
Sbjct: 3578 -cacaaactccaggaacccaagcacaaaa 3551
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>dbj|AK060273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G06, full
            insert sequence
          Length = 1560

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  agctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtagaccat 356
            |||||||||| ||| ||||| ||||  ||||| |||||||| ||||| |  | |||||||
Sbjct: 1243 agctatgatgacaacacagactgtagggcaagctgttgctgcggctgcaaagaagaccat 1184

                                                             
Query: 357  gtcgaggcaagtactgaaggaggcagggtggtctgaagctgtcttagca 405
            || || || ||||||||||||||||  || |||||||||||||||||||
Sbjct: 1183 gttgacgccagtactgaaggaggcaatgtagtctgaagctgtcttagca 1135



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Minus

                                                                        
Query: 124  tatacacacctgatgcaaaccttgcccttggtacaaaagcccagggcatttgtgtgctgg 183
            |||||||  |||||||||||| |||||||  ||||||||| |||||||||||| ||||| 
Sbjct: 1400 tatacacttctgatgcaaaccatgcccttcatacaaaagctcagggcatttgtatgctg- 1342

                                         
Query: 184  acacaaaccccagcaacccatgcacaaaa 212
             ||||||| |||| |||||| ||||||||
Sbjct: 1341 -cacaaactccaggaacccaagcacaaaa 1314
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>gb|AY106586.1| Zea mays PCO088725 mRNA sequence
          Length = 912

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                       
Query: 293 ggttagctatgatgtcaatacagattgtaacgcaagttgttgctgtggctgaagggtaga 352
           |||||||||||| | ||| || || ||||  || || ||||||||||| || || | |||
Sbjct: 514 ggttagctatgacgacaacacggactgtagagcgagctgttgctgtggttgtagagaaga 455

                                        
Query: 353 ccatgtcgaggcaagtactgaaggaggca 381
           |||||||||||| | ||||||||||||||
Sbjct: 454 ccatgtcgaggctaatactgaaggaggca 426
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>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence
          Length = 127914

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 324  gcaagttgttgctgtggctgaagggtagaccatgtcgaggcaagtactgaaggaggca 381
            ||||| ||||||||||| || |  | ||||||||||||||| | ||||||||||||||
Sbjct: 4126 gcaagctgttgctgtggttgcaaagaagaccatgtcgaggctaatactgaaggaggca 4069
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>gb|AC110180.10| Mus musculus chromosome 19, clone RP24-358B11, complete sequence
          Length = 144511

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    aaaaaatgtggatggaacaca 229
              |||||||||||||||||||||
Sbjct: 119366 aaaaaatgtggatggaacaca 119386
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>gb|AF543212.1| Potato virus A isolate U infectious clone 1, complete genome
          Length = 9598

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>gb|AC124729.4| Mus musculus BAC clone RP23-479H9 from chromosome 14, complete sequence
          Length = 176086

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tcccagactcacacacatca 110
              ||||||||||||||||||||
Sbjct: 133344 tcccagactcacacacatca 133363
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>gb|AF543709.1| Potato virus A isolate U clone 2, complete genome
          Length = 9598

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>gb|U56964.1| Caenorhabditis elegans cosmid F52E4, complete sequence
          Length = 33796

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   caagttgttgctgtggctga 344
             ||||||||||||||||||||
Sbjct: 23020 caagttgttgctgtggctga 23039
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>emb|AL954650.8| Human DNA sequence from clone RP11-523M19 on chromosome 1, complete
             sequence
          Length = 86257

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   tgtgtgctggacacaaaccccagc 197
             |||||||||||||| |||||||||
Sbjct: 72343 tgtgtgctggacacgaaccccagc 72320
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>emb|AL136081.10| Human DNA sequence from clone RP5-886K12 on chromosome 6, complete
             sequence
          Length = 99850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   aaaaggtaagctttgaattg 264
             ||||||||||||||||||||
Sbjct: 30236 aaaaggtaagctttgaattg 30217
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>emb|Z21670.1|PVCGA Potato virus A complete genome
          Length = 9585

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      ctcacacacatcactccgca 117
               ||||||||||||||||||||
Sbjct: 4151574 ctcacacacatcactccgca 4151593
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>emb|AJ296311.1|POA296311 Potato A potyvirus mRNA for polyprotein
          Length = 9585

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>emb|AJ131402.1|PVI131402 Potato virus A RNA complete genome, isolate U
          Length = 9598

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>emb|AJ131401.1|PVI131401 Potato virus A RNA complete genome, isolate Ali
          Length = 9598

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   tcaactacatcactagccaaatat 54
            ||||| ||||||||||||||||||
Sbjct: 3127 tcaacaacatcactagccaaatat 3150
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>emb|BX510312.7| Zebrafish DNA sequence from clone CH211-240B21 in linkage group 5,
              complete sequence
          Length = 177177

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    actccgcaataaaatataca 129
              ||||||||||||||||||||
Sbjct: 128113 actccgcaataaaatataca 128094
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>ref|NM_076128.2| Caenorhabditis elegans WaRThog (hedgehog-like family) family member
            (wrt-2) (wrt-2) mRNA, complete cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  caagttgttgctgtggctga 344
            ||||||||||||||||||||
Sbjct: 1157 caagttgttgctgtggctga 1138
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      ctcacacacatcactccgca 117
               ||||||||||||||||||||
Sbjct: 4245356 ctcacacacatcactccgca 4245375
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>emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromosome X, complete sequence
          Length = 229809

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    tacaaaagcccagggcattt 174
              ||||||||||||||||||||
Sbjct: 167523 tacaaaagcccagggcattt 167542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,899,413
Number of Sequences: 3902068
Number of extensions: 3899413
Number of successful extensions: 73560
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73448
Number of HSP's gapped (non-prelim): 112
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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