ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22a06 |
|---|---|
| Clone Library Name | barley_pub |
>UMP7_ARATH (Q9FMV1) Unknown mitochondrial protein At5g63510| Length = 252 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/60 (43%), Positives = 41/60 (68%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 ++G +VE ++ AG++V RIP GE+WGGNPA+F+R LT+EE I + A ++L+ Sbjct: 165 MEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLS 224
>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680| Length = 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 25/60 (41%), Positives = 41/60 (68%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 ++G +VE ++ AG+++ RIP GE+WGGNPA+F+R LT+EE I + A ++L+ Sbjct: 169 MEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLS 228
>YRDA_SHIFL (P0A9X0) Protein yrdA| Length = 184 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/56 (48%), Positives = 37/56 (66%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANY 401 LDG +VE M+ AG+LV QN R+ G ++ G+P K +R L+DEE A + SA NY Sbjct: 113 LDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168
>YRDA_ECOLI (P0A9W9) Protein yrdA| Length = 184 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/56 (48%), Positives = 37/56 (66%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANY 401 LDG +VE M+ AG+LV QN R+ G ++ G+P K +R L+DEE A + SA NY Sbjct: 113 LDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168
>Y304_METJA (Q57752) Hypothetical protein MJ0304| Length = 159 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/61 (37%), Positives = 37/61 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 L+G + ++ ++ A ALV QN IP + G P + +R+LT+EEI I E+A Y L+ Sbjct: 93 LNGAKIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLS 152 Query: 388 K 386 + Sbjct: 153 E 153
>PAAY_ECOLI (P77181) Phenylacetic acid degradation protein paaY| Length = 196 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 +DG V+ ++ +V A A V+ +P + G+PAK +R+L+++E+A+ + Y L Sbjct: 104 MDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLV 163 Query: 388 -----KAHAVENAKPVE----KIDFEKVLRKK 320 H VE + +E ++ F++ LR K Sbjct: 164 TRCKQTLHQVEPLREIEPGRKRLVFDENLRPK 195
>Y3753_PSEAE (P40882) Hypothetical protein PA3753| Length = 174 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/64 (31%), Positives = 39/64 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 L+G + K+ ++ A AL+ + IP G + G+P K +R+L++ + + SAA+Y + A Sbjct: 103 LNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNA 162 Query: 388 KAHA 377 + +A Sbjct: 163 RRYA 166
>CAIE_SALTI (Q8Z9L6) Carnitine operon protein caiE| Length = 198 Score = 37.0 bits (84), Expect = 0.039 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 +DG V+ + +VAA + V+ + ++ G+PA+ LR++TD+E+ + + Y +LA Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELYWKRLNTKEYQDLA 163
>CAIE_SALPA (Q5PIL2) Carnitine operon protein caiE| Length = 198 Score = 37.0 bits (84), Expect = 0.039 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 +DG V+ + +VAA + V+ + ++ G+PA+ LR++TD+E+ + + Y +LA Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163
>CAIE_SALCH (Q57TJ2) Carnitine operon protein caiE| Length = 198 Score = 37.0 bits (84), Expect = 0.039 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 +DG V+ + +VAA + V+ + ++ G+PA+ LR++TD+E+ + + Y +LA Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163
>CAIE_SALTY (Q8ZRX6) Carnitine operon protein caiE| Length = 198 Score = 36.6 bits (83), Expect = 0.051 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLA 389 +DG V+ + +VAA + V+ + ++ G+PA+ LR++TD+E+ + + Y +LA Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKHLNTKEYQDLA 163
>YJV8_YEAST (P40892) Putative acetyltransferase in HXT11-HXT8 intergenic region| (EC 2.3.1.-) Length = 196 Score = 34.7 bits (78), Expect = 0.19 Identities = 17/45 (37%), Positives = 31/45 (68%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEE 434 + GV + K+ ++AAG++V ++ IP V GNP K +RK+T+++ Sbjct: 146 IPGVNIGKNSVIAAGSVVIRD--IPENVVAAGNPCKVIRKITEKD 188
>CAIE_ECOL6 (Q8FLA7) Carnitine operon protein caiE| Length = 196 Score = 33.5 bits (75), Expect = 0.43 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNL- 392 +DG V+ + +VAA + V+ R ++ G PA+ +R ++D+E+ + + Y +L Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLV 163 Query: 391 AKAH-AVENAKPVEKID 344 + H A+ +P+ +++ Sbjct: 164 GRCHAALHETQPLRQME 180
>LPXD_BARHE (Q8VQ23) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 348 Score = 33.5 bits (75), Expect = 0.43 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = -1 Query: 565 DGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAK 461 D +V+ K+ +AAG+ V + IP GE WGG+PA+ Sbjct: 293 DHIVIGKYVQIAAGSGVMND--IPDGEKWGGSPAR 325
>CAIE_ECOLI (P39206) Carnitine operon protein caiE| Length = 196 Score = 32.3 bits (72), Expect = 0.96 Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNL- 392 +DG V+ + +VAA + V+ R ++ G PA+ +R ++D+E+ + + Y +L Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLV 163 Query: 391 AKAH-AVENAKPVEKID 344 + H ++ +P+ +++ Sbjct: 164 GRCHVSLHETQPLRQME 180
>MAA_BACSU (P37515) Probable maltose O-acetyltransferase (EC 2.3.1.79)| (Maltose transacetylase) Length = 184 Score = 32.3 bits (72), Expect = 0.96 Identities = 14/39 (35%), Positives = 27/39 (69%) Frame = -1 Query: 562 GVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKL 446 GV + + ++A+G++V ++ +P V GGNPA+ L++L Sbjct: 148 GVTIGDNAVIASGSVVTKD--VPANTVVGGNPARILKQL 184
>CAIE_PROSL (Q8GB16) Carnitine operon protein caiE| Length = 197 Score = 32.3 bits (72), Expect = 0.96 Identities = 14/59 (23%), Positives = 34/59 (57%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNL 392 +DG ++ + +VAA + V+ + ++ G+PAK +R ++D+++ + + Y +L Sbjct: 104 MDGAIIGEESIVAAMSFVKAGFQGQARQMLMGSPAKHVRDISDQDMQWKRMNTREYQDL 162
>MAA_ECOLI (P77791) Maltose O-acetyltransferase (EC 2.3.1.79) (Maltose| transacetylase) Length = 182 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/39 (41%), Positives = 27/39 (69%) Frame = -1 Query: 562 GVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKL 446 GV + + +VA+GA+V ++ +P V GGNPA+ ++KL Sbjct: 146 GVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 182
>CAIE_ECO57 (Q8XA36) Carnitine operon protein caiE| Length = 196 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNL- 392 +DG V+ + +VAA + V+ ++ G PA+ +R ++D+E+ + + Y +L Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLV 163 Query: 391 AKAHA-VENAKPVEKID 344 + HA + +P+ +++ Sbjct: 164 GRCHASLHETQPLRQME 180
>LPXD_BARQU (Q6G1J4) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 348 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = -1 Query: 565 DGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAK 461 D +V+ K +AAG+ V + IP GE WGG+PA+ Sbjct: 293 DHIVIGKCVQIAAGSGVMND--IPDGEKWGGSPAR 325
>MATA_BACSH (P26840) Probable macrolide acetyltransferase (EC 2.3.1.-)| (Fragment) Length = 180 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRK-LTDEEIAFI 422 + GV++ ++AA + V ++ + ++ GNPAKF++K +DE+I F+ Sbjct: 93 MPGVIIGDGAIIAANSTVVKS--VEPYSIYSGNPAKFIKKRFSDEKIEFL 140
>CAIE_SHIFL (Q83SQ8) Carnitine operon protein caiE| Length = 196 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNL- 392 +DG V+ + +VAA + V+ ++ G PA+ +R ++D+E+ + + Y +L Sbjct: 104 MDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLV 163 Query: 391 AKAHA-VENAKPVEKID 344 + HA + +P+ +++ Sbjct: 164 GRCHASLHETQPLRQME 180
>PIGF_HUMAN (Q07326) Phosphatidylinositol-glycan biosynthesis, class F protein| (PIG-F) (GPI11 homolog) Length = 219 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -2 Query: 318 LLTRTRNTVPCLVPLGKSLQSW-----RRPVLLLRPNKLCLSVFLSFFGAF 181 ++ T TVPCL LG +L++W R V + N L ++ SF GA+ Sbjct: 117 VILSTFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFVGAW 167
>GFRA2_CHICK (O13157) GDNF family receptor alpha-2 precursor (GFR-alpha-2)| (Neurturin receptor alpha) (NTNR-alpha) (NRTNR-alpha) (GDNF receptor beta) (GDNFR-beta) Length = 465 Score = 31.2 bits (69), Expect = 2.1 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 279 PLGKSLQSWRRPVLLLRPNKLC 214 P G+ LQ WR PV +R NKLC Sbjct: 26 PPGQDLQGWRVPVDCIRANKLC 47
>SAT2_ARATH (Q8S895) Serine acetyltransferase 2 (EC 2.3.1.30) (AtSAT-2)| (AtSERAT3;1) Length = 323 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEE 434 L + + MVAAG+LV ++ +P V GNPAK +R + +++ Sbjct: 236 LGNISIGAGAMVAAGSLVLKD--VPSHSVVAGNPAKLIRVMEEQD 278
>PIGF_MOUSE (O09101) Phosphatidylinositol-glycan biosynthesis, class F protein| (PIG-F) Length = 219 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = -2 Query: 306 TRNTVPCLVPLGKSLQSW-----RRPVLLLRPNKLCLSVFLSFFGAF 181 T TVPCL LG +L++W R V + N L ++ SF GA+ Sbjct: 121 TFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFTGAW 167
>SYI_CLOTE (Q899C3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1036 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -1 Query: 565 DGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLAK 386 D +V +KHG+ + ++ I C E W G P K K + I ++ E Y + Sbjct: 326 DNIVCKKHGLPMINLVDKEGKFIDCVEPWKGMPVK---KADSKIIEYMDEKGILYKSEKF 382 Query: 385 AHA 377 H+ Sbjct: 383 THS 385
>ATKB_SALTI (Q8Z8E5) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 569 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -1 Query: 520 LVRQNTRIPC-GEVWGGNPAKFLRKLTDEEIAFIAESAANYSNLAKAHAVENAKPVEKID 344 LV+ IPC GEV G + +T E I ES +++++ AVE A V+ + Sbjct: 133 LVKAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGRAVEAAGDVDVLL 192 Query: 343 FEK 335 +K Sbjct: 193 LDK 195
>VATA_STAAU (P26839) Virginiamycin A acetyltransferase (EC 2.3.1.-)| Length = 219 Score = 29.6 bits (65), Expect = 6.2 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = -1 Query: 568 LDGVVVEKHGMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFIAE-SAANYSNL 392 + GV + ++AA A+V +N + + GGNP KF+RK + + I E A + NL Sbjct: 134 MPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGV--IEEWLALQWWNL 189 Query: 391 AKAHAVENAKPVEKIDFEKVLRKK 320 EN + D E + RK+ Sbjct: 190 DMKIINENLPFIINGDIEMLKRKR 213
>Y1198_METJA (Q58598) Hypothetical protein MJ1198| Length = 761 Score = 29.3 bits (64), Expect = 8.1 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -1 Query: 475 GNPAKFLRKLTDEEIAFIAESAANYSNLAKAHAVENAKPVEKIDFEKVLRKKV 317 G+ A+ +RK +EEI AE A + L K+ +E +P + D K +RK V Sbjct: 308 GDEAEEIRKKIEEEIDRRAEPAKDIPFLVKSEVLERLRP-KMADVAKRIRKAV 359
>APEB_STRAW (Q82F74) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 432 Score = 29.3 bits (64), Expect = 8.1 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -1 Query: 472 NPAKFLRKLTDEEIAFIAESAANYSNLAKAHAVEN-AKPVEKIDFEKV 332 NP +F R TD+ ++F+A S + Y HAV N A+ +EK F +V Sbjct: 3 NPVRFDRGHTDDLMSFLAASPSPY------HAVTNAAERLEKAGFRQV 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,056,124 Number of Sequences: 219361 Number of extensions: 1584607 Number of successful extensions: 5267 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5266 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
