| Clone Name | rbags21l02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195033.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0015J03.11), mRNA Length = 2187 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 407 gaacacgatttgtaggcgggatgtatccagcatgaggttccaggtcacgagcatttggtt 466 |||||||| ||| ||| |||||| |||||||||||||| ||| ||| | | || ||||| Sbjct: 1918 gaacacgacttgaaggagggatgaatccagcatgaggtgccaaatcatgggaatgtggtt 1859 Query: 467 tagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcgaga 524 |||||||||||| ||| ||| || | ||||||| |||||||| ||||||||||||||| Sbjct: 1858 tagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcgaga 1801
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 462 tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521 ||||||||||||||||| ||| ||| || | ||||||| |||||||| |||||||||||| Sbjct: 78062 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 78003 Query: 522 aga 524 ||| Sbjct: 78002 aga 78000 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 407 gaacacgatttgtaggcgggatgtatccagcatgaggt 444 |||||||| ||| ||| |||||| |||||||||||||| Sbjct: 78225 gaacacgacttgaaggagggatgaatccagcatgaggt 78188
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 462 tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521 ||||||||||||||||| ||| ||| || | ||||||| |||||||| |||||||||||| Sbjct: 4310521 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 4310462 Query: 522 aga 524 ||| Sbjct: 4310461 aga 4310459 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 407 gaacacgatttgtaggcgggatgtatccagcatgaggt 444 |||||||| ||| ||| |||||| |||||||||||||| Sbjct: 4310684 gaacacgacttgaaggagggatgaatccagcatgaggt 4310647
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 462 tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521 ||||||||||||||||| ||| ||| || | ||||||| |||||||| |||||||||||| Sbjct: 4311342 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 4311283 Query: 522 aga 524 ||| Sbjct: 4311282 aga 4311280 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 407 gaacacgatttgtaggcgggatgtatccagcatgaggt 444 |||||||| ||| ||| |||||| |||||||||||||| Sbjct: 4311505 gaacacgacttgaaggagggatgaatccagcatgaggt 4311468
>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence Length = 186437 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 297 aactgctatttctctagcatga 318 |||||||||||||||||||||| Sbjct: 96398 aactgctatttctctagcatga 96419
>gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complete sequence Length = 112242 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 297 aactgctatttctctagcatga 318 |||||||||||||||||||||| Sbjct: 68044 aactgctatttctctagcatga 68065
>gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1, mRNA (cDNA clone MGC:100926 IMAGE:7145589), complete cds Length = 1310 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 tttctctagcatgaggaagatc 326 |||||||||||||||||||||| Sbjct: 774 tttctctagcatgaggaagatc 795
>ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1 (impa1), mRNA Length = 1310 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 tttctctagcatgaggaagatc 326 |||||||||||||||||||||| Sbjct: 774 tttctctagcatgaggaagatc 795
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166000 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 atttgcaggtgcacgaacacga 414 |||||||||||||||||||||| Sbjct: 44363 atttgcaggtgcacgaacacga 44384
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 393 atttgcaggtgcacgaacacga 414 |||||||||||||||||||||| Sbjct: 23514 atttgcaggtgcacgaacacga 23493
>ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC554418 (LOC554418), mRNA Length = 1258 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 tttctctagcatgaggaagatc 326 |||||||||||||||||||||| Sbjct: 753 tttctctagcatgaggaagatc 774
>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete sequence Length = 145610 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 tttctctagcatgaggaagatc 326 |||||||||||||||||||||| Sbjct: 105770 tttctctagcatgaggaagatc 105791
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 393 atttgcaggtgcacgaacacga 414 |||||||||||||||||||||| Sbjct: 80199 atttgcaggtgcacgaacacga 80178
>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8), mRNA Length = 2816 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttctgtatttgcagtattaca 122 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete cds Length = 2188 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tttttgtcagtagtatctcct 170 ||||||||||||||||||||| Sbjct: 1241 tttttgtcagtagtatctcct 1221
>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene Length = 78600 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tttttgtcagtagtatctcct 170 ||||||||||||||||||||| Sbjct: 36184 tttttgtcagtagtatctcct 36164
>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w Length = 2654 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tttttgtcagtagtatctcct 170 ||||||||||||||||||||| Sbjct: 1627 tttttgtcagtagtatctcct 1607
>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11, complete sequence Length = 183599 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttctgtatttgcagtattaca 122 ||||||||||||||||||||| Sbjct: 34488 ttctgtatttgcagtattaca 34508
>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete sequence Length = 191255 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 ggaactgctatttctctagca 315 ||||||||||||||||||||| Sbjct: 90527 ggaactgctatttctctagca 90507
>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds Length = 2816 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttctgtatttgcagtattaca 122 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>gb|AC110252.25| Mus musculus chromosome 6, clone RP23-267G12, complete sequence Length = 172806 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 cagaagattctcctgcatag 567 |||||||||||||||||||| Sbjct: 47422 cagaagattctcctgcatag 47403
>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence Length = 194736 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attggcactaggatttttgt 156 |||||||||||||||||||| Sbjct: 101535 attggcactaggatttttgt 101516
>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence Length = 180794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agttcctgggtagtggtaag 208 |||||||||||||||||||| Sbjct: 149900 agttcctgggtagtggtaag 149919
>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence Length = 204528 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 cagaagattctcctgcatag 567 |||||||||||||||||||| Sbjct: 12264 cagaagattctcctgcatag 12283
>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence Length = 174583 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 catggaattggcactaggat 150 |||||||||||||||||||| Sbjct: 62981 catggaattggcactaggat 63000
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 atggtgcgcttctcggctga 366 |||||||||||||||||||| Sbjct: 3304700 atggtgcgcttctcggctga 3304719
>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence Length = 242759 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agttcctgggtagtggtaag 208 |||||||||||||||||||| Sbjct: 204677 agttcctgggtagtggtaag 204658
>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 aaacgttctgtatttgcagt 116 |||||||||||||||||||| Sbjct: 134158 aaacgttctgtatttgcagt 134139
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ttgcaggtgcacgaacacga 414 |||||||||||||||||||| Sbjct: 1064409 ttgcaggtgcacgaacacga 1064428
>gb|AF524867.1| Human echovirus 9 isolate DM, complete genome Length = 7453 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 catagggaactctagcataaccac 586 |||||||||||||| ||||||||| Sbjct: 1000 catagggaactctaccataaccac 1023
>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence Length = 217034 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 gaggaagatcatcaatgtga 336 |||||||||||||||||||| Sbjct: 121058 gaggaagatcatcaatgtga 121077
>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence Length = 182571 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ggctgatcatacacataggt 380 |||||||||||||||||||| Sbjct: 143766 ggctgatcatacacataggt 143747
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ggctgatcatacacataggt 380 |||||||||||||||||||| Sbjct: 986852 ggctgatcatacacataggt 986833
>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete sequence Length = 182529 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 catggaattggcactaggat 150 |||||||||||||||||||| Sbjct: 172432 catggaattggcactaggat 172451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,180,726 Number of Sequences: 3902068 Number of extensions: 5180726 Number of successful extensions: 79077 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78942 Number of HSP's gapped (non-prelim): 135 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)