ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_195033.1| Oryza sativa (japonica cultivar-group) hypothet... 92 3e-15
2gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 70 9e-09
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 9e-09
5gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, comp... 44 0.54
6gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complet... 44 0.54
7gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase... 44 0.54
8ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosph... 44 0.54
9gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 44 0.54
10gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswel... 44 0.54
11ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.54
12emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in... 44 0.54
13gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 44 0.54
14ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-rela... 42 2.1
15gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL0... 42 2.1
16emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II fro... 42 2.1
17emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ... 42 2.1
18emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in ... 42 2.1
19emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chro... 42 2.1
20gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, co... 42 2.1
21gb|AC110252.25| Mus musculus chromosome 6, clone RP23-267G12, co... 40 8.4
22gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, c... 40 8.4
23gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosom... 40 8.4
24gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome ... 40 8.4
25gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosom... 40 8.4
26gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.4
27gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 8.4
28gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, comple... 40 8.4
29gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 8.4
30gb|AF524867.1| Human echovirus 9 isolate DM, complete genome 40 8.4
31gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete ... 40 8.4
32gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete se... 40 8.4
33gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 8.4
34emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chrom... 40 8.4

>ref|NM_195033.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNAb0015J03.11), mRNA
          Length = 2187

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 100/118 (84%)
 Strand = Plus / Minus

                                                                        
Query: 407  gaacacgatttgtaggcgggatgtatccagcatgaggttccaggtcacgagcatttggtt 466
            |||||||| ||| ||| |||||| |||||||||||||| |||  ||| | | || |||||
Sbjct: 1918 gaacacgacttgaaggagggatgaatccagcatgaggtgccaaatcatgggaatgtggtt 1859

                                                                      
Query: 467  tagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcgaga 524
            |||||||||||| ||| ||| || | ||||||| |||||||| |||||||||||||||
Sbjct: 1858 tagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcgaga 1801



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 462   tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521
             ||||||||||||||||| ||| ||| || | ||||||| |||||||| ||||||||||||
Sbjct: 78062 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 78003

                
Query: 522   aga 524
             |||
Sbjct: 78002 aga 78000



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 407   gaacacgatttgtaggcgggatgtatccagcatgaggt 444
             |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 78225 gaacacgacttgaaggagggatgaatccagcatgaggt 78188



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                           
Query: 462     tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521
               ||||||||||||||||| ||| ||| || | ||||||| |||||||| ||||||||||||
Sbjct: 4310521 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 4310462

                  
Query: 522     aga 524
               |||
Sbjct: 4310461 aga 4310459



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 407     gaacacgatttgtaggcgggatgtatccagcatgaggt 444
               |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 4310684 gaacacgacttgaaggagggatgaatccagcatgaggt 4310647



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                           
Query: 462     tggtttagatctggaagatgcgcccgcaatagggtaagattggttgccagttacatatcg 521
               ||||||||||||||||| ||| ||| || | ||||||| |||||||| ||||||||||||
Sbjct: 4311342 tggtttagatctggaagttgcacccacagtggggtaagcttggttgctagttacatatcg 4311283

                  
Query: 522     aga 524
               |||
Sbjct: 4311282 aga 4311280



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 407     gaacacgatttgtaggcgggatgtatccagcatgaggt 444
               |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 4311505 gaacacgacttgaaggagggatgaatccagcatgaggt 4311468



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>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence
          Length = 186437

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 297   aactgctatttctctagcatga 318
             ||||||||||||||||||||||
Sbjct: 96398 aactgctatttctctagcatga 96419



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>gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complete sequence
          Length = 112242

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 297   aactgctatttctctagcatga 318
             ||||||||||||||||||||||
Sbjct: 68044 aactgctatttctctagcatga 68065



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>gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1, mRNA (cDNA
           clone MGC:100926 IMAGE:7145589), complete cds
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 305 tttctctagcatgaggaagatc 326
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1 (impa1), mRNA
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 305 tttctctagcatgaggaagatc 326
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 393   atttgcaggtgcacgaacacga 414
             ||||||||||||||||||||||
Sbjct: 44363 atttgcaggtgcacgaacacga 44384



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>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167926

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 393   atttgcaggtgcacgaacacga 414
             ||||||||||||||||||||||
Sbjct: 23514 atttgcaggtgcacgaacacga 23493



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>ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC554418 (LOC554418),
           mRNA
          Length = 1258

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 305 tttctctagcatgaggaagatc 326
           ||||||||||||||||||||||
Sbjct: 753 tttctctagcatgaggaagatc 774



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>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete
              sequence
          Length = 145610

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 305    tttctctagcatgaggaagatc 326
              ||||||||||||||||||||||
Sbjct: 105770 tttctctagcatgaggaagatc 105791



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>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 393   atttgcaggtgcacgaacacga 414
             ||||||||||||||||||||||
Sbjct: 80199 atttgcaggtgcacgaacacga 80178



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>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8),
            mRNA
          Length = 2816

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 102  ttctgtatttgcagtattaca 122
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete
            cds
          Length = 2188

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 150  tttttgtcagtagtatctcct 170
            |||||||||||||||||||||
Sbjct: 1241 tttttgtcagtagtatctcct 1221



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>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene
          Length = 78600

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   tttttgtcagtagtatctcct 170
             |||||||||||||||||||||
Sbjct: 36184 tttttgtcagtagtatctcct 36164



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>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w
          Length = 2654

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 150  tttttgtcagtagtatctcct 170
            |||||||||||||||||||||
Sbjct: 1627 tttttgtcagtagtatctcct 1607



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>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11,
             complete sequence
          Length = 183599

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   ttctgtatttgcagtattaca 122
             |||||||||||||||||||||
Sbjct: 34488 ttctgtatttgcagtattaca 34508



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>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete
             sequence
          Length = 191255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 295   ggaactgctatttctctagca 315
             |||||||||||||||||||||
Sbjct: 90527 ggaactgctatttctctagca 90507



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>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds
          Length = 2816

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 102  ttctgtatttgcagtattaca 122
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AC110252.25| Mus musculus chromosome 6, clone RP23-267G12, complete sequence
          Length = 172806

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   cagaagattctcctgcatag 567
             ||||||||||||||||||||
Sbjct: 47422 cagaagattctcctgcatag 47403



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>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    attggcactaggatttttgt 156
              ||||||||||||||||||||
Sbjct: 101535 attggcactaggatttttgt 101516



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>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence
          Length = 180794

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agttcctgggtagtggtaag 208
              ||||||||||||||||||||
Sbjct: 149900 agttcctgggtagtggtaag 149919



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>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence
          Length = 204528

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   cagaagattctcctgcatag 567
             ||||||||||||||||||||
Sbjct: 12264 cagaagattctcctgcatag 12283



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>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence
          Length = 174583

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   catggaattggcactaggat 150
             ||||||||||||||||||||
Sbjct: 62981 catggaattggcactaggat 63000



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     atggtgcgcttctcggctga 366
               ||||||||||||||||||||
Sbjct: 3304700 atggtgcgcttctcggctga 3304719



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    agttcctgggtagtggtaag 208
              ||||||||||||||||||||
Sbjct: 204677 agttcctgggtagtggtaag 204658



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>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aaacgttctgtatttgcagt 116
              ||||||||||||||||||||
Sbjct: 134158 aaacgttctgtatttgcagt 134139



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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ttgcaggtgcacgaacacga 414
               ||||||||||||||||||||
Sbjct: 1064409 ttgcaggtgcacgaacacga 1064428



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>gb|AF524867.1| Human echovirus 9 isolate DM, complete genome
          Length = 7453

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 563  catagggaactctagcataaccac 586
            |||||||||||||| |||||||||
Sbjct: 1000 catagggaactctaccataaccac 1023



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>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence
          Length = 217034

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    gaggaagatcatcaatgtga 336
              ||||||||||||||||||||
Sbjct: 121058 gaggaagatcatcaatgtga 121077



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>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence
          Length = 182571

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    ggctgatcatacacataggt 380
              ||||||||||||||||||||
Sbjct: 143766 ggctgatcatacacataggt 143747



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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    ggctgatcatacacataggt 380
              ||||||||||||||||||||
Sbjct: 986852 ggctgatcatacacataggt 986833



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>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete
              sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    catggaattggcactaggat 150
              ||||||||||||||||||||
Sbjct: 172432 catggaattggcactaggat 172451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,180,726
Number of Sequences: 3902068
Number of extensions: 5180726
Number of successful extensions: 79077
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78942
Number of HSP's gapped (non-prelim): 135
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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