ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21k21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065I20, full insert sequence Length = 1878 Score = 325 bits (164), Expect = 7e-86 Identities = 305/353 (86%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||||||||||||||||||||| ||||| |||||||| | ||||| |||| |||||| Sbjct: 1681 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 1622 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 || ||||||| || || || || || |||||||| ||||||||||||||||||| || Sbjct: 1621 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 1562 Query: 186 tctttggtgagcccaccggtttcagcctcgtcagtactccccatcaaagggtacacacct 245 || ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| Sbjct: 1561 tccctggtgagcccaccagtttcagcctcctcagtactcgccatcaaagggtagacacct 1502 Query: 246 ctcacagaaaaacattgcctcgcctgcgttgngccataagaacgccactttgatggatca 305 || ||| |||||||||||| ||||| |||| ||| |||||||||||||||| ||||||| Sbjct: 1501 cttgcagcaaaacattgccttgcctgagttgtgccgtaagaacgccactttgttggatca 1442 Query: 306 gagccctcgcgtgggaacacaactgctaaaactggcattggtggcctgtatttagcaact 365 |||||||| |||||||| ||||| || || ||||||||||||||| |||| || |||||| Sbjct: 1441 gagccctcacgtgggaagacaacggccaacactggcattggtggcttgtacttggcaact 1382 Query: 366 aacctggcagctctccctgagaaggngaacacaacaatcgcagcancttttac 418 |||||||||||||| |||||||| | ||||||||| || |||||| ||||||| Sbjct: 1381 aacctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttac 1329
>dbj|AK060466.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C12, full insert sequence Length = 1723 Score = 325 bits (164), Expect = 7e-86 Identities = 305/353 (86%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||||||||||||||||||||| ||||| |||||||| | ||||| |||| |||||| Sbjct: 1432 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 1373 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 || ||||||| || || || || || |||||||| ||||||||||||||||||| || Sbjct: 1372 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 1313 Query: 186 tctttggtgagcccaccggtttcagcctcgtcagtactccccatcaaagggtacacacct 245 || ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| Sbjct: 1312 tccctggtgagcccaccagtttcagcctcctcagtactcgccatcaaagggtagacacct 1253 Query: 246 ctcacagaaaaacattgcctcgcctgcgttgngccataagaacgccactttgatggatca 305 || ||| |||||||||||| ||||| |||| ||| |||||||||||||||| ||||||| Sbjct: 1252 cttgcagcaaaacattgccttgcctgagttgtgccgtaagaacgccactttgttggatca 1193 Query: 306 gagccctcgcgtgggaacacaactgctaaaactggcattggtggcctgtatttagcaact 365 |||||||| |||||||| ||||| || || ||||||||||||||| |||| || |||||| Sbjct: 1192 gagccctcacgtgggaagacaacggccaacactggcattggtggcttgtacttggcaact 1133 Query: 366 aacctggcagctctccctgagaaggngaacacaacaatcgcagcancttttac 418 |||||||||||||| |||||||| | ||||||||| || |||||| ||||||| Sbjct: 1132 aacctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttac 1080
>gb|AY107163.1| Zea mays PCO109318 mRNA sequence Length = 1040 Score = 321 bits (162), Expect = 1e-84 Identities = 306/355 (86%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||||| Sbjct: 744 cactcaatgatcttgacaacagaagaatcaccaatcttttcaaagattatcaacctgtcg 685 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 | ||||| | |||||| || ||||| |||||| | | |||||||||||||| || || Sbjct: 684 aaaggcttcactatgccaaccgaccgaccatagctcatcgcaagttttatcccatactct 625 Query: 186 tctttggtgagcccaccggtttcagcctcgtcagtactccccatcaaagggtacacacct 245 || || || |||||||| ||||| ||||| |||||||||||||||||||||||||| ||| Sbjct: 624 tcctttgttagcccaccagtttcggcctcatcagtactccccatcaaagggtacacgcct 565 Query: 246 ctcacagaaaaacattgcctcgcctgcgttgngccataagaacgccactttgatggatca 305 ||||| | |||||||| || ||||| |||| ||||||||||||||||||||||||||| Sbjct: 564 ctcactgcgaaacattgtcttgcctgtgttgtgccataagaacgccactttgatggatcg 505 Query: 306 gagccctcgcgtgggaacacaactgctaaaactggcattggtggcctgtatttagcaact 365 || || || |||||||| | ||||||||||| |||||||| |||||| || || |||||| Sbjct: 504 gatccttcacgtgggaagataactgctaaaattggcattgttggcctatacttggcaact 445 Query: 366 aacctggcagctctccctgagaaggngaacacaacaatcgcagcancttttactt 420 ||||| ||||||||||||||||| | |||||||||||| |||||| ||||||||| Sbjct: 444 aacctcgcagctctccctgagaatgtgaacacaacaatggcagcagcttttactt 390
>gb|BT017023.1| Zea mays clone EK07D2312C08.c mRNA sequence Length = 540 Score = 230 bits (116), Expect = 3e-57 Identities = 232/271 (85%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||||| Sbjct: 282 cactcaatgatcttgacaacagaagaatcaccaatcttttcaaagattatcaacctgtcg 223 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 | ||||| | |||||| || ||||| |||||| | | |||||||||||||| || || Sbjct: 222 aaaggcttcactatgccaaccgaccgaccatagctcatcgcaagttttatcccatactct 163 Query: 186 tctttggtgagcccaccggtttcagcctcgtcagtactccccatcaaagggtacacacct 245 || || || |||||||| ||||| ||||| |||||||||||||||||||||||||| ||| Sbjct: 162 tcctttgttagcccaccagtttcggcctcatcagtactccccatcaaagggtacacgcct 103 Query: 246 ctcacagaaaaacattgcctcgcctgcgttgngccataagaacgccactttgatggatca 305 ||||| | |||||||| || ||||| |||| ||||||||||||||||||||||||||| Sbjct: 102 ctcactgcgaaacattgtcttgcctgtgttgtgccataagaacgccactttgatggatcg 43 Query: 306 gagccctcgcgtgggaacacaactgctaaaa 336 || || || |||||||| | ||||||||||| Sbjct: 42 gatccttcacgtgggaagataactgctaaaa 12
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 113 bits (57), Expect = 5e-22 Identities = 92/104 (88%) Strand = Plus / Minus Query: 268 cctgcgttgngccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 327 |||| |||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct: 42887 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 42828 Query: 328 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 371 | || || ||||||||||||||| |||| || |||||||||||| Sbjct: 42827 cggccaacactggcattggtggcttgtacttggcaactaacctg 42784 Score = 111 bits (56), Expect = 2e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||||||||||||||||||||| ||||| |||||||| | ||||| |||| |||||| Sbjct: 43407 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 43348 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 || ||||||| || || || || || |||||||| ||||||||||||||||||| || Sbjct: 43347 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 43288 Query: 186 tctttggtgagcccaccggtttcagcct 213 || ||||||||||||| |||||||||| Sbjct: 43287 tccctggtgagcccaccagtttcagcct 43260 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 211 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 270 |||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| |||| Sbjct: 43050 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 42991 Query: 271 g 271 | Sbjct: 42990 g 42990 Score = 60.0 bits (30), Expect = 6e-06 Identities = 46/52 (88%) Strand = Plus / Minus Query: 367 acctggcagctctccctgagaaggngaacacaacaatcgcagcancttttac 418 ||||||||||||| |||||||| | ||||||||| || |||||| ||||||| Sbjct: 42713 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttac 42662
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 5e-22 Identities = 92/104 (88%) Strand = Plus / Minus Query: 268 cctgcgttgngccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 327 |||| |||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct: 5986804 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 5986745 Query: 328 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 371 | || || ||||||||||||||| |||| || |||||||||||| Sbjct: 5986744 cggccaacactggcattggtggcttgtacttggcaactaacctg 5986701 Score = 111 bits (56), Expect = 2e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||||||||||||||||||||| ||||| |||||||| | ||||| |||| |||||| Sbjct: 5987324 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 5987265 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 || ||||||| || || || || || |||||||| ||||||||||||||||||| || Sbjct: 5987264 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 5987205 Query: 186 tctttggtgagcccaccggtttcagcct 213 || ||||||||||||| |||||||||| Sbjct: 5987204 tccctggtgagcccaccagtttcagcct 5987177 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 211 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 270 |||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| |||| Sbjct: 5986967 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 5986908 Query: 271 g 271 | Sbjct: 5986907 g 5986907 Score = 60.0 bits (30), Expect = 6e-06 Identities = 46/52 (88%) Strand = Plus / Minus Query: 367 acctggcagctctccctgagaaggngaacacaacaatcgcagcancttttac 418 ||||||||||||| |||||||| | ||||||||| || |||||| ||||||| Sbjct: 5986630 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttac 5986579
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 5e-22 Identities = 92/104 (88%) Strand = Plus / Minus Query: 268 cctgcgttgngccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 327 |||| |||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct: 6053281 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 6053222 Query: 328 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 371 | || || ||||||||||||||| |||| || |||||||||||| Sbjct: 6053221 cggccaacactggcattggtggcttgtacttggcaactaacctg 6053178 Score = 111 bits (56), Expect = 2e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 66 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 125 ||||||||||||||||||||||| ||||| |||||||| | ||||| |||| |||||| Sbjct: 6053801 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 6053742 Query: 126 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 185 || ||||||| || || || || || |||||||| ||||||||||||||||||| || Sbjct: 6053741 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 6053682 Query: 186 tctttggtgagcccaccggtttcagcct 213 || ||||||||||||| |||||||||| Sbjct: 6053681 tccctggtgagcccaccagtttcagcct 6053654 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 211 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 270 |||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| |||| Sbjct: 6053444 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 6053385 Query: 271 g 271 | Sbjct: 6053384 g 6053384 Score = 60.0 bits (30), Expect = 6e-06 Identities = 46/52 (88%) Strand = Plus / Minus Query: 367 acctggcagctctccctgagaaggngaacacaacaatcgcagcancttttac 418 ||||||||||||| |||||||| | ||||||||| || |||||| ||||||| Sbjct: 6053107 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttac 6053056
>gb|AF111167.2|DJ293M10 Homo sapiens jun dimerization protein gene, partial cds; cfos gene, complete cds; and unknown gene Length = 202267 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gtgtagttgagactgttgcctgag 36 |||||||||||||||||| ||||| Sbjct: 59415 gtgtagttgagactgttgtctgag 59392
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tttcaaaaataatcaccctg 122 |||||||||||||||||||| Sbjct: 139314 tttcaaaaataatcaccctg 139333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tttcaaaaataatcaccctg 122 |||||||||||||||||||| Sbjct: 33525766 tttcaaaaataatcaccctg 33525747
>emb|AL450107.11| Human DNA sequence from clone RP11-495K23 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 50886 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 caactgctaaaactggcatt 344 |||||||||||||||||||| Sbjct: 36678 caactgctaaaactggcatt 36697
>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence Length = 166114 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 atcttttcaaaaataatcac 118 |||||||||||||||||||| Sbjct: 130443 atcttttcaaaaataatcac 130462
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tttcaaaaataatcaccctg 122 |||||||||||||||||||| Sbjct: 33616238 tttcaaaaataatcaccctg 33616219
>gb|U37214.1|SIU37214 Simian immunodeficiency virus isolate G023 tat, rev, and envelope glycoprotein (env) genes, partial cds Length = 444 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cttctttggtgagcccaccg 203 |||||||||||||||||||| Sbjct: 301 cttctttggtgagcccaccg 282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,302,162 Number of Sequences: 3902068 Number of extensions: 3302162 Number of successful extensions: 65989 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65844 Number of HSP's gapped (non-prelim): 145 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
