ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21k20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHSL2_SOLTU (P53535) Alpha-1,4 glucan phosphorylase, L-2 isozyme... 34 0.38
2SPEN_DROME (Q8SX83) Protein split ends 32 1.9
3PHSL1_SOLTU (P04045) Alpha-1,4 glucan phosphorylase, L-1 isozyme... 31 2.4
4PHSL_VICFA (P53536) Alpha-1,4 glucan phosphorylase, L isozyme, c... 31 2.4
5RHAB_MANSM (Q65Q24) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase) 30 7.1
6GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 30 7.1
7THIG_ERWCT (Q6DAM4) Thiazole biosynthesis protein thiG 29 9.3
8TIE2_MOUSE (Q02858) Angiopoietin-1 receptor precursor (EC 2.7.10... 29 9.3

>PHSL2_SOLTU (P53535) Alpha-1,4 glucan phosphorylase, L-2 isozyme, chloroplast|
           precursor (EC 2.4.1.1) (Starch phosphorylase L-2)
          Length = 974

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 403 PDAFF*GFLTRIHSHKRVV*GWFG-THENKRLKELSTKRSRDGVTPRV 543
           PDA F   + RIH +KR +   FG  +  K++KE+S +  ++   PRV
Sbjct: 695 PDAMFDVQIKRIHEYKRQLLNIFGIVYRYKKMKEMSPEERKEKFVPRV 742



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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/95 (18%), Positives = 42/95 (44%)
 Frame = +2

Query: 53   HI*KHLYQMLTSAPHSIDKAKQTMAKMHEEDNIEKQDHMNKLEP*DPKWYSDARKASRAT 232
            H  +HL Q L +  H   K  Q   + +++    +    ++++  +        +    +
Sbjct: 3881 HNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQHQS 3940

Query: 233  KKTLNTSDWSEHQQWQ*AEDDRQVHIPKE*RSDPQ 337
            ++ LN    ++ QQ Q  +  +Q+H P++ +  PQ
Sbjct: 3941 QQQLNQQHQAQQQQLQQIQKLQQMHGPQQQQKSPQ 3975



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>PHSL1_SOLTU (P04045) Alpha-1,4 glucan phosphorylase, L-1 isozyme, chloroplast|
           precursor (EC 2.4.1.1) (Starch phosphorylase L-1)
          Length = 966

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 403 PDAFF*GFLTRIHSHKRVV*GWFG-THENKRLKELSTKRSRDGVTPRV 543
           PDA F   + RIH +KR +   FG  +  K++KE++    +    PRV
Sbjct: 687 PDAMFDIQVKRIHEYKRQLLNIFGIVYRYKKMKEMTAAERKTNFVPRV 734



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>PHSL_VICFA (P53536) Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast|
           precursor (EC 2.4.1.1) (Starch phosphorylase L)
          Length = 1003

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 403 PDAFF*GFLTRIHSHKRVV*GWFG-THENKRLKELSTKRSRDGVTPRV 543
           PD+ F   + RIH +KR +   FG  +  K++KE++    ++   PRV
Sbjct: 724 PDSMFDIQVKRIHEYKRQLLNIFGIVYRYKKMKEMNAAERKENFVPRV 771



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>RHAB_MANSM (Q65Q24) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)|
          Length = 482

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 393 AHLELCPHRLVNNSGKANNCGSDLHSLGICTW 298
           A+LE   + +VN   K +N G  LHS+GI TW
Sbjct: 54  AYLE---NEIVNGLRKISNSGRTLHSIGIDTW 82



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>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor|
          Length = 678

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 95  HSIDKAKQTMAKMHEEDNIEKQDHMNKLEP*D--PKWYSDARKASRATKKTLNTSDWSEH 268
           +S+DK K    K H++D  EK++  +K E  D   K +   +K  +  KK  N+   S +
Sbjct: 115 NSVDKKKDKKEKKHKKDKKEKKEKKDKKEKKDKKEKKHKKEKKHKKDKKKKENSEVMSLY 174

Query: 269 QQWQ 280
           +  Q
Sbjct: 175 KTGQ 178



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>THIG_ERWCT (Q6DAM4) Thiazole biosynthesis protein thiG|
          Length = 261

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 582 SQFANMSLKHKDPNSGRDAVSGPLRT*FFQPFVLVSSKPPLDHSFVAVNSRQESL 418
           SQ   M++K  D N G DA+  PLR    +     S     D +  A    +E+L
Sbjct: 35  SQLVTMAMKRVDLNGGNDAILAPLRQLGIKLLPNTSGAKTADEAVFAARLAREAL 89



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>TIE2_MOUSE (Q02858) Angiopoietin-1 receptor precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor TIE-2) (mTIE2)
           (Tyrosine-protein kinase receptor TEK) (p140 TEK)
           (Tunica interna endothelial cell kinase) (HYK) (STK1)
           (CD202b antigen)
          Length = 1122

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 516 VQRRRHAQSWGPCVSKTCLQTASQGLC 596
           + RR  AQ WGP  S+ C    + G+C
Sbjct: 207 IVRRCEAQKWGPDCSRPCTTCKNNGVC 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,498,229
Number of Sequences: 219361
Number of extensions: 1493196
Number of successful extensions: 3661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3659
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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