ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21k20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 1... 194 2e-46
2gb|AC137989.2| Oryza sativa (japonica cultivar-group) chromosome... 194 2e-46
3emb|AJ457803.1|OSA457803 Oryza sativa (japonica cultivar-group) ... 194 2e-46
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
5dbj|AK072267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 194 2e-46
7gb|BT024110.1| Zea mays clone EL01N0515D05 mRNA sequence 107 4e-20
8gb|AY108212.1| Zea mays PCO110549 mRNA sequence 103 7e-19
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
10emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 74 6e-10
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 6e-10
12emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 74 6e-10
13gb|AC153000.5| Medicago truncatula clone mth2-94c2, complete seq... 52 0.002
14gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, c... 50 0.009
15gb|AC113590.11| Mus musculus chromosome 5, clone RP23-277L17, co... 46 0.13
16gb|AC158126.7| Mus musculus chromosome 5, clone RP24-220P21, com... 46 0.13
17gb|AC020644.7| Homo sapiens chromosome 10 clone RP11-552O21, com... 44 0.53
18gb|AC018980.10| Homo sapiens chromosome 10 clone RP11-476F14, co... 44 0.53
19gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, comple... 44 0.53
20gb|AC154808.2| Mus musculus BAC clone RP24-512K19 from chromosom... 42 2.1
21gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete se... 42 2.1
22gb|AC150540.2| Bos taurus BAC CH240-385H19 (Children's Hospital... 42 2.1
23emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chr... 42 2.1
24ref|NM_068979.2| Caenorhabditis elegans Osm-9 and Capsaicin rece... 42 2.1
25gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, compl... 42 2.1
26gb|AC067961.8| Homo sapiens BAC clone RP11-59F3 from 2, complete... 42 2.1
27gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 8.2
28gb|AC102150.10| Mus musculus chromosome 7, clone RP23-310N5, com... 40 8.2
29gb|DQ178619.1| Homo sapiens RAB38, member RAS oncogene family (R... 40 8.2
30emb|AL158160.8| Human DNA sequence from clone RP11-165O3 on chro... 40 8.2
31gb|AF528182.1| Brassica rapa subsp. pekinensis glucosyl transfer... 40 8.2
32emb|AJ251835.1|MMU251835 Mus musculus Kcnq1, Ltrpc5, Mash2, Tapa... 40 8.2
33emb|BX119991.17| Zebrafish DNA sequence from clone CH211-240A8 i... 40 8.2
34gb|AF139595.1|AF139595 Mus musculus Mash2 gene, complete cds 40 8.2
35dbj|AB070454.1| Rhodococcus sp. YK2 genes for hypothetical prote... 40 8.2
36emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 8.2
37gb|AC015800.13| Mus musculus chromosome 7, clone RP23-366M16, co... 40 8.2
38emb|BX004879.21| Zebrafish DNA sequence from clone CH211-157L7 i... 40 8.2
39dbj|AP001642.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.2
40gb|AC121792.3| Mus musculus BAC clone RP23-404J7 from 3, complet... 40 8.2
41emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, co... 40 8.2
42gb|AC166350.4| Mus musculus BAC clone RP24-220P10 from chromosom... 40 8.2
43emb|AJ251788.1|MMU251788 Mus musculus Tssc6 gene 40 8.2
44emb|AL844489.6| Mouse DNA sequence from clone RP23-101P8 on chro... 40 8.2
45dbj|AP003184.2| Mus musculus genomic DNA, chromosome 7 clone:B27... 40 8.2
46dbj|AP005436.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2 
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09,
              complete sequence
          Length = 135363

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                          
Query: 228    ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
              |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 124612 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 124554

                                                                          
Query: 287    gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
              |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 124553 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 124494

                            
Query: 347    tttccagagttatt 360
              ||||||| ||||||
Sbjct: 124493 tttccagtgttatt 124480



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                          
Query: 534    gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
              |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 124340 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 124281

                        
Query: 594    tgctgttact 603
              ||||||||||
Sbjct: 124280 tgctgttact 124271



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                        
Query: 69     tgtatcagatgctaactagtgctccacattccattgacaaag 110
              |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 124771 tgtaccagatgctgactagtgctccacattccattgataaag 124730
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>gb|AC137989.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0050G15, complete sequence
          Length = 152556

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                         
Query: 228   ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
             |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 10519 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 10461

                                                                         
Query: 287   gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
             |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 10460 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 10401

                           
Query: 347   tttccagagttatt 360
             ||||||| ||||||
Sbjct: 10400 tttccagtgttatt 10387



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                         
Query: 534   gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
             |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 10247 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 10188

                       
Query: 594   tgctgttact 603
             ||||||||||
Sbjct: 10187 tgctgttact 10178



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 69    tgtatcagatgctaactagtgctccacattccattgacaaag 110
             |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 10678 tgtaccagatgctgactagtgctccacattccattgataaag 10637
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>emb|AJ457803.1|OSA457803 Oryza sativa (japonica cultivar-group) partial mRNA for putative
           bZIP protein (bzip gene)
          Length = 690

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                       
Query: 228 ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
           |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 413 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 355

                                                                       
Query: 287 gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 354 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 295

                         
Query: 347 tttccagagttatt 360
           ||||||| ||||||
Sbjct: 294 tttccagtgttatt 281



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 534 gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
           |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 141 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 82

                     
Query: 594 tgctgttact 603
           ||||||||||
Sbjct: 81  tgctgttact 72



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 69  tgtatcagatgctaactagtgctccacattccattgacaaag 110
           |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 572 tgtaccagatgctgactagtgctccacattccattgataaag 531
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                           
Query: 228     ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
               |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 6068529 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 6068471

                                                                           
Query: 287     gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
               |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 6068470 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 6068411

                             
Query: 347     tttccagagttatt 360
               ||||||| ||||||
Sbjct: 6068410 tttccagtgttatt 6068397



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                           
Query: 534     gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
               |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 6068257 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 6068198

                         
Query: 594     tgctgttact 603
               ||||||||||
Sbjct: 6068197 tgctgttact 6068188



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 69      tgtatcagatgctaactagtgctccacattccattgacaaag 110
               |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 6068688 tgtaccagatgctgactagtgctccacattccattgataaag 6068647
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>dbj|AK072267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I18, full
            insert sequence
          Length = 1822

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                        
Query: 228  ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
            |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1557 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 1499

                                                                        
Query: 287  gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
            |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 1498 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 1439

                          
Query: 347  tttccagagttatt 360
            ||||||| ||||||
Sbjct: 1438 tttccagtgttatt 1425



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                        
Query: 534  gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
            |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 1285 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 1226

                      
Query: 594  tgctgttact 603
            ||||||||||
Sbjct: 1225 tgctgttact 1216



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 69   tgtatcagatgctaactagtgctccacattccattgacaaag 110
            |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 1716 tgtaccagatgctgactagtgctccacattccattgataaag 1675
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  194 bits (98), Expect = 2e-46
 Identities = 127/134 (94%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                           
Query: 228     ctacaaagaaaa-cactaaacacctccgactggtccgagcatcaacaatggcagtgagct 286
               |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 6134996 ctacaaagaaaaaccctaaacacctccgactggtc-gagcatcaacaatggaagtgagct 6134938

                                                                           
Query: 287     gaggatgaccgccaggtgcatattcccaaagaatgaagatcagatccacagttattagcc 346
               |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 6134937 gaggatgaccgccaggtgcatattccaaaagaataaagatcagatccacagttattagcc 6134878

                             
Query: 347     tttccagagttatt 360
               ||||||| ||||||
Sbjct: 6134877 tttccagtgttatt 6134864



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                           
Query: 534     gcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctc 593
               |||||||||||||||| |||||||||| |||||  || |||||||| || || |||||||
Sbjct: 6134724 gcccagagttggggtctttgtgtttcagagacagattagcaaactgtgaatccaggtctc 6134665

                         
Query: 594     tgctgttact 603
               ||||||||||
Sbjct: 6134664 tgctgttact 6134655



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 69      tgtatcagatgctaactagtgctccacattccattgacaaag 110
               |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 6135155 tgtaccagatgctgactagtgctccacattccattgataaag 6135114
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>gb|BT024110.1| Zea mays clone EL01N0515D05 mRNA sequence
          Length = 1801

 Score =  107 bits (54), Expect = 4e-20
 Identities = 100/114 (87%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                        
Query: 236  aaaacactaaacacctccgactggtccgagcatcaacaatggcagtgagctgaggatgac 295
            ||||| ||||||||| |||||||||| |||||||| ||||||  | ||||||||||||||
Sbjct: 1450 aaaaccctaaacaccgccgactggtc-gagcatcaccaatggacgcgagctgaggatgac 1392

                                                                  
Query: 296  cgccaggtgcatattcccaaagaatgaagatcagatccacagttattagccttt 349
            |||||||||||||| || ||| ||| || |||||||||| || |||||||||||
Sbjct: 1391 cgccaggtgcatatcccgaaataataaacatcagatccatagctattagccttt 1338



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                        
Query: 495  gaaagaactaagtacgaagaggtccagagacggcgtcacgcccagagttggggtccttgt 554
            |||||||||||||||||||||| |||||||  || || || || | ||||||||| ||||
Sbjct: 1236 gaaagaactaagtacgaagaggcccagagagagcatcccggcccgtgttggggtctttgt 1177

                                                                
Query: 555  gtttcaaagacatgtttgcaaactgcgagtcaaggtctctgctgttactacg 606
            |||||| ||||| ||| || ||||||   |||||||| ||||||||||||||
Sbjct: 1176 gtttcagagacaagttggcgaactgcacatcaaggtccctgctgttactacg 1125
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>gb|AY108212.1| Zea mays PCO110549 mRNA sequence
          Length = 917

 Score =  103 bits (52), Expect = 7e-19
 Identities = 95/108 (87%), Gaps = 1/108 (0%)
 Strand = Plus / Minus

                                                                       
Query: 242 ctaaacacctccgactggtccgagcatcaacaatggcagtgagctgaggatgaccgccag 301
           ||||||||| |||||||||| |||||||| ||||||  | ||||||||||||||||||||
Sbjct: 913 ctaaacaccgccgactggtc-gagcatcaccaatggacgcgagctgaggatgaccgccag 855

                                                           
Query: 302 gtgcatattcccaaagaatgaagatcagatccacagttattagccttt 349
           |||||||| || ||| ||| || |||||||||| || |||||||||||
Sbjct: 854 gtgcatatcccgaaataataaacatcagatccatagctattagccttt 807



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                       
Query: 495 gaaagaactaagtacgaagaggtccagagacggcgtcacgcccagagttggggtccttgt 554
           |||||||||||||||||||||| |||||||  || || || || | ||||||||| ||||
Sbjct: 705 gaaagaactaagtacgaagaggcccagagagagcatcccggcccgtgttggggtctttgt 646

                                                               
Query: 555 gtttcaaagacatgtttgcaaactgcgagtcaaggtctctgctgttactacg 606
           |||||| ||||| ||| || ||||||   |||||||| ||||||||||||||
Sbjct: 645 gtttcagagacaagttggcgaactgcacatcaaggtccctgctgttactacg 594
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                           
Query: 530     tcacgcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaagg 589
               |||||||| |||||||| ||   |||||| | ||||||||||||||| ||||| || |||
Sbjct: 4858111 tcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaatcgagg 4858052

                                
Query: 590     tctctgctgttactacg 606
               |||||||||||||||||
Sbjct: 4858051 tctctgctgttactacg 4858035



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                           
Query: 242     ctaaacacctccgactggtccgagcatc--aacaatggcagtgagctgaggatgaccgcc 299
               ||||||||||||||||||| | ||||||  ||||||||   |||| |||||||||||| |
Sbjct: 4858391 ctaaacacctccgactggt-ctagcatcaaaacaatggatatgagatgaggatgaccgtc 4858333

                           
Query: 300     aggtgcatattc 311
               ||||||| ||||
Sbjct: 4858332 aggtgcacattc 4858321
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                         
Query: 530   tcacgcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaagg 589
             |||||||| |||||||| ||   |||||| | ||||||||||||||| ||||| || |||
Sbjct: 80311 tcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaatcgagg 80370

                              
Query: 590   tctctgctgttactacg 606
             |||||||||||||||||
Sbjct: 80371 tctctgctgttactacg 80387



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                         
Query: 242   ctaaacacctccgactggtccgagcatc--aacaatggcagtgagctgaggatgaccgcc 299
             ||||||||||||||||||| | ||||||  ||||||||   |||| |||||||||||| |
Sbjct: 80031 ctaaacacctccgactggt-ctagcatcaaaacaatggatatgagatgaggatgaccgtc 80089

                         
Query: 300   aggtgcatattc 311
             ||||||| ||||
Sbjct: 80090 aggtgcacattc 80101
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                           
Query: 530     tcacgcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaagg 589
               |||||||| |||||||| ||   |||||| | ||||||||||||||| ||||| || |||
Sbjct: 4858093 tcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaatcgagg 4858034

                                
Query: 590     tctctgctgttactacg 606
               |||||||||||||||||
Sbjct: 4858033 tctctgctgttactacg 4858017



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                           
Query: 242     ctaaacacctccgactggtccgagcatc--aacaatggcagtgagctgaggatgaccgcc 299
               ||||||||||||||||||| | ||||||  ||||||||   |||| |||||||||||| |
Sbjct: 4858373 ctaaacacctccgactggt-ctagcatcaaaacaatggatatgagatgaggatgaccgtc 4858315

                           
Query: 300     aggtgcatattc 311
               ||||||| ||||
Sbjct: 4858314 aggtgcacattc 4858303
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 530    tcacgcccagagttggggtccttgtgtttcaaagacatgtttgcaaactgcgagtcaagg 589
              |||||||| |||||||| ||   |||||| | ||||||||||||||| ||||| || |||
Sbjct: 101848 tcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaatcgagg 101907

                               
Query: 590    tctctgctgttactacg 606
              |||||||||||||||||
Sbjct: 101908 tctctgctgttactacg 101924



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                          
Query: 242    ctaaacacctccgactggtccgagcatc--aacaatggcagtgagctgaggatgaccgcc 299
              ||||||||||||||||||| | ||||||  ||||||||   |||| |||||||||||| |
Sbjct: 101568 ctaaacacctccgactggt-ctagcatcaaaacaatggatatgagatgaggatgaccgtc 101626

                          
Query: 300    aggtgcatattc 311
              ||||||| ||||
Sbjct: 101627 aggtgcacattc 101638
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>gb|AC153000.5| Medicago truncatula clone mth2-94c2, complete sequence
          Length = 97390

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 547   gtccttgtgtttcaaagacatgtttgcaaactgcgagtcaaggtctctgctgtt 600
             ||||||||| |||| ||| | ||| |||||||| || |||||||||||||||||
Sbjct: 53615 gtccttgtgcttcagagaaaggttagcaaactgagaatcaaggtctctgctgtt 53562
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>gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, complete sequence
          Length = 104901

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 138   aagaagacaacatagagaaacaaga 162
             |||||||||||||||||||||||||
Sbjct: 46837 aagaagacaacatagagaaacaaga 46813
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>gb|AC113590.11| Mus musculus chromosome 5, clone RP23-277L17, complete sequence
          Length = 171727

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 302    gtgcatattcccaaagaatgaagatca 328
              ||||||||||||||| |||||||||||
Sbjct: 157703 gtgcatattcccaaaaaatgaagatca 157729
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>gb|AC158126.7| Mus musculus chromosome 5, clone RP24-220P21, complete sequence
          Length = 166888

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 302    gtgcatattcccaaagaatgaagatca 328
              ||||||||||||||| |||||||||||
Sbjct: 107945 gtgcatattcccaaaaaatgaagatca 107971
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>gb|AC020644.7| Homo sapiens chromosome 10 clone RP11-552O21, complete sequence
          Length = 197720

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  gaattcacagccacaaaagagt 455
            ||||||||||||||||||||||
Sbjct: 3817 gaattcacagccacaaaagagt 3796
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>gb|AC018980.10| Homo sapiens chromosome 10 clone RP11-476F14, complete sequence
          Length = 197709

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  gaattcacagccacaaaagagt 455
            ||||||||||||||||||||||
Sbjct: 3817 gaattcacagccacaaaagagt 3796
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>gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, complete sequence
          Length = 115507

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 141   aagacaacatagagaaacaaga 162
             ||||||||||||||||||||||
Sbjct: 14167 aagacaacatagagaaacaaga 14188
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>gb|AC154808.2| Mus musculus BAC clone RP24-512K19 from chromosome 13, complete
             sequence
          Length = 187080

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   acaaagaaaacactaaacacc 250
             |||||||||||||||||||||
Sbjct: 91185 acaaagaaaacactaaacacc 91205
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>gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete sequence
          Length = 32727

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gatgcatgaagaagacaacat 150
            |||||||||||||||||||||
Sbjct: 3657 gatgcatgaagaagacaacat 3677
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>gb|AC150540.2| Bos taurus  BAC CH240-385H19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 172471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   gcattcttttaaggattcttg 429
             |||||||||||||||||||||
Sbjct: 31710 gcattcttttaaggattcttg 31690
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>emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chromosome 6 Contains part
              of gene KIAA1733 and a CpG island, complete sequence
          Length = 164000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     atcagatgctaactagtgctc 92
              |||||||||||||||||||||
Sbjct: 128203 atcagatgctaactagtgctc 128183
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>ref|NM_068979.2| Caenorhabditis elegans Osm-9 and Capsaicin receptor-Related family
           member (ocr-2) (ocr-2) mRNA, complete cds
          Length = 2782

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 130 gatgcatgaagaagacaacat 150
           |||||||||||||||||||||
Sbjct: 503 gatgcatgaagaagacaacat 483
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>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence
          Length = 196544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    tacaaagaaaacactaaacac 249
              |||||||||||||||||||||
Sbjct: 194827 tacaaagaaaacactaaacac 194807
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>gb|AC067961.8| Homo sapiens BAC clone RP11-59F3 from 2, complete sequence
          Length = 105884

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 tacaaagaaaacactaaacac 249
           |||||||||||||||||||||
Sbjct: 283 tacaaagaaaacactaaacac 263
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    tctaggggtggtttggaact 477
              ||||||||||||||||||||
Sbjct: 429119 tctaggggtggtttggaact 429138
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>gb|AC102150.10| Mus musculus chromosome 7, clone RP23-310N5, complete sequence
          Length = 182393

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 482   agaacaaaaggctgaaagaactaa 505
             |||| |||||||||||||||||||
Sbjct: 15606 agaagaaaaggctgaaagaactaa 15583
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>gb|DQ178619.1| Homo sapiens RAB38, member RAS oncogene family (RAB38) gene, complete
             cds
          Length = 65550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 382   ttccaaatgtgctgctcctttcct 405
             |||||||||||||||||| |||||
Sbjct: 47114 ttccaaatgtgctgctcccttcct 47137
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>emb|AL158160.8| Human DNA sequence from clone RP11-165O3 on chromosome 10 Contains the
              gene for a novel protein and a nucleophosmin (nucleolar
              phosphoprotein B23, numatrin) (NPM1)(B23,NPM,NUMATRIN)
              pseudogene, complete sequence
          Length = 113036

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 154    gaaacaagaccacatgaacaaattagaa 181
              |||| ||||||||||||||||| |||||
Sbjct: 100628 gaaataagaccacatgaacaaaatagaa 100655
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>gb|AF528182.1| Brassica rapa subsp. pekinensis glucosyl transferase-like protein
           mRNA, partial cds
          Length = 346

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 379 caattccaaatgtgctgctccttt 402
           |||||||||||||| |||||||||
Sbjct: 253 caattccaaatgtgttgctccttt 276
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>emb|AJ251835.1|MMU251835 Mus musculus Kcnq1, Ltrpc5, Mash2, Tapa-1, Tssc4 and Tssc6 genes,
              alternative transcripts
          Length = 249487

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ccagagctacaaagaaaaca 241
              ||||||||||||||||||||
Sbjct: 233776 ccagagctacaaagaaaaca 233795
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>emb|BX119991.17| Zebrafish DNA sequence from clone CH211-240A8 in linkage group 23,
             complete sequence
          Length = 101348

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacattccattgacaaagc 111
             ||||||||||||||||||||
Sbjct: 51362 ccacattccattgacaaagc 51381
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>gb|AF139595.1|AF139595 Mus musculus Mash2 gene, complete cds
          Length = 16479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ccagagctacaaagaaaaca 241
             ||||||||||||||||||||
Sbjct: 14389 ccagagctacaaagaaaaca 14408
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>dbj|AB070454.1| Rhodococcus sp. YK2 genes for hypothetical protein, extradiol
            dioxygenase, hypothetical protein, aldehyde
            dehydrogenase, hypothetical proteins, putative
            oxidoreductase, extradiol dioxygenase, partial and
            complete cds
          Length = 7601

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  tccgactggtccgagcatca 270
            ||||||||||||||||||||
Sbjct: 6891 tccgactggtccgagcatca 6910
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
              sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    atagagaaacaagaccacat 168
              ||||||||||||||||||||
Sbjct: 181097 atagagaaacaagaccacat 181078
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>gb|AC015800.13| Mus musculus chromosome 7, clone RP23-366M16, complete sequence
          Length = 200026

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   ccagagctacaaagaaaaca 241
             ||||||||||||||||||||
Sbjct: 25735 ccagagctacaaagaaaaca 25716
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>emb|BX004879.21| Zebrafish DNA sequence from clone CH211-157L7 in linkage group 22,
              complete sequence
          Length = 195947

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    aagatgcatgaagaagacaacata 151
              ||||||||||||| ||||||||||
Sbjct: 169906 aagatgcatgaaggagacaacata 169883
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>dbj|AP001642.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-685B24, complete
             sequences
          Length = 72000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 382   ttccaaatgtgctgctcctttcct 405
             |||||||||||||||||| |||||
Sbjct: 12271 ttccaaatgtgctgctcccttcct 12248
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>gb|AC121792.3| Mus musculus BAC clone RP23-404J7 from 3, complete sequence
          Length = 191723

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   gaaacaagaccacatgaacaaatt 177
             |||||||| |||||||||||||||
Sbjct: 92590 gaaacaaggccacatgaacaaatt 92613
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>emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, complete sequence
          Length = 167472

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacattccattgacaaagc 111
             ||||||||||||||||||||
Sbjct: 18579 ccacattccattgacaaagc 18598
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>gb|AC166350.4| Mus musculus BAC clone RP24-220P10 from chromosome 17, complete
             sequence
          Length = 156954

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    tggcacatttaaaagcacctgtat 73
             ||||||||||| ||||||||||||
Sbjct: 29824 tggcacatttataagcacctgtat 29801
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>emb|AJ251788.1|MMU251788 Mus musculus Tssc6 gene
          Length = 249487

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ccagagctacaaagaaaaca 241
              ||||||||||||||||||||
Sbjct: 233776 ccagagctacaaagaaaaca 233795
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>emb|AL844489.6| Mouse DNA sequence from clone RP23-101P8 on chromosome 2, complete
              sequence
          Length = 213549

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 104    gacaaagcaaagcagactatggctaaga 131
              ||||||||||||||||| || |||||||
Sbjct: 183572 gacaaagcaaagcagacaattgctaaga 183599
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>dbj|AP003184.2| Mus musculus genomic DNA, chromosome 7 clone:B271I8, complete sequences
          Length = 110807

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ccagagctacaaagaaaaca 241
             ||||||||||||||||||||
Sbjct: 10570 ccagagctacaaagaaaaca 10589
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>dbj|AP005436.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-164N3, complete
              sequence
          Length = 147520

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 382    ttccaaatgtgctgctcctttcct 405
              |||||||||||||||||| |||||
Sbjct: 124832 ttccaaatgtgctgctcccttcct 124809


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,988,320
Number of Sequences: 3902068
Number of extensions: 5988320
Number of successful extensions: 118992
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118757
Number of HSP's gapped (non-prelim): 223
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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