ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590650.10| Human DNA sequence from clone RP11-334F20 on ch... 42 0.93
2gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 0.93
3ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA 42 0.93
4gb|AC130828.4| Mus musculus BAC clone RP23-406H14 from chromosom... 40 3.7
5emb|CR384105.16| Zebrafish DNA sequence from clone CH211-186K13 ... 40 3.7
6gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 3.7
7gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N1... 40 3.7

>emb|AL590650.10| Human DNA sequence from clone RP11-334F20 on chromosome 6, complete
            sequence
          Length = 15619

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                           
Query: 103  aaagaaagaangaaaggccgaaanacacata 133
            |||||||||| |||||||||||| | |||||
Sbjct: 4263 aaagaaagaaagaaaggccgaaacatacata 4293



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 98      aagcaaaagaaagaangaaaggcc 121
               ||||||||||||||| ||||||||
Sbjct: 1363005 aagcaaaagaaagaaagaaaggcc 1362982



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>ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA
          Length = 2616

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   aagcaaaagaaagaangaaaggcc 121
            ||||||||||||||| ||||||||
Sbjct: 1333 aagcaaaagaaagaaagaaaggcc 1356



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>gb|AC130828.4| Mus musculus BAC clone RP23-406H14 from chromosome 6, complete sequence
          Length = 182673

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 98    aagcaaaagaaagaangaaaggc 120
             ||||||||||||||| |||||||
Sbjct: 93934 aagcaaaagaaagaaagaaaggc 93912



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>emb|CR384105.16| Zebrafish DNA sequence from clone CH211-186K13 in linkage group 14,
             complete sequence
          Length = 144285

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 103   aaagaaagaangaaaggccgaaa 125
             |||||||||| ||||||||||||
Sbjct: 52195 aaagaaagaaagaaaggccgaaa 52173



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>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 97     caagcaaaagaaagaangaaagg 119
              |||||||||||||||| ||||||
Sbjct: 152680 caagcaaaagaaagaaagaaagg 152702



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>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 139    ttctacagctgcacaatgcatttg 162
              |||||||||||||||||| |||||
Sbjct: 157682 ttctacagctgcacaatgtatttg 157659


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,576,565
Number of Sequences: 3902068
Number of extensions: 1576565
Number of successful extensions: 75960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75935
Number of HSP's gapped (non-prelim): 25
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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