>TRPB_PSESY (P34817) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 408

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = -1

Query: 459 TDRAGRRGDNKSARRHGEVPAVGGAHDLRHGQGRAALRPEDH-----VAAQGDRSKHVVR 295
           TD       +K  R  G +PA+  AH L     RA   P+DH     ++ +GD+    V 
Sbjct: 338 TDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVM 397

Query: 294 HTFKTNRYVLH 262
           H  +T +   H
Sbjct: 398 HHMETTKQEKH 408

>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB|
          Length = 142

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 412 WRSPCSGRCA*PTPRA 365
           WRSPC  RCA P PRA
Sbjct: 110 WRSPCGSRCAPPAPRA 125

>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)|
          Length = 1455

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 278  FVLNVCLTTCLLRSPWAATWSSGRRAALPCPWRRSCAPP 394
            F+L  C T C L    A  W       L C WRR C  P
Sbjct: 1154 FILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSP 1192

>CLPA_RHOBL (P05444) ClpA homolog protein|
          Length = 793

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = -2

Query: 548 ADHLFSKLKKRCKLLG---VFAEVDRILRPEGKLIVRDDAETIRALEGMAKSL 399
           A HL S  K++ K+LG   + A V +I R   + + +DDAET+R LE   K L
Sbjct: 438 AQHLVSDSKRK-KVLGTKEIEAVVAKIARIPPRNVSKDDAETLRDLERTLKRL 489

>SH22A_MOUSE (Q9QXK9) SH2 domain protein 2A (Lck-associated adapter protein)|
           (Lad) (Rlk/Itk-binding protein) (Ribp)
          Length = 374

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 289 CMSHYMLASISLGRHVVFWTQSSPSLPVA*VMRTSHCRDFAMPSSALIVSASSRTISFPS 468
           C  H++LA +  GRHVV    S+ +     +   + C     P   ++    +R  + P+
Sbjct: 158 CCRHFLLAQLGDGRHVVLGEDSAHAQLQDLLEHYTECP--LSPYGEILTQPLARQTAEPA 215

Query: 469 GLNIRSTS 492
           GL++R+ S
Sbjct: 216 GLSLRADS 223

>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 465

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
 Frame = +3

Query: 117 SFYNKCCPSKRKNERPKNTYMILQLHNAFAFFSINKNHVLIP-RAEIQSSVIRNGLS*MY 293
           S Y        K  +       L+  NAF F  +N        +    S+ I N      
Sbjct: 9   SLYRNTSEYSDKKVKISGWIRTLRASNAFGFIEVNDGSFFKNVQVVFDSAKISNYKEISK 68

Query: 294 VSLHACFDLLGPPRGLLDAEQPF-------LARGVGHAHLPLQGLRHAFERSYCLRVVPH 452
           + + +   ++G      D++QPF       +  G+  +  PLQ  RH FE    LR + H
Sbjct: 69  LPISSSISVIGTLVETPDSKQPFEIQAEEIIVEGMSDSDYPLQKKRHTFE---YLRTIAH 125

>RS10_SPOFR (Q962R9) 40S ribosomal protein S10|
          Length = 158

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -1

Query: 588 IFQHLPENV*PPTRRPSLFKAQKEM*IVGSVC*G*PDIEARRETDRAGRRGDNKSARRHG 409
           IF HLP  + P T + S+   + E    G+V  G PD  AR   DR+  R    +   H 
Sbjct: 79  IFLHLPPEIVPATLKRSV---RAETVRRGAV--GRPDAPARSAEDRSAYRRAPTTPAAHD 133

Query: 408 EVPAVG-GAHDL--RHGQGRAALRP 343
           +   VG G+ DL  R G GR    P
Sbjct: 134 KKADVGPGSADLEFRGGFGRGRPAP 158

>YIAO_ECOLI (P37676) 2,3-diketo-L-gulonate-binding periplasmic protein yiaO|
           precursor (2,3-DKG-binding protein) (Extracytoplasmic
           solute receptor protein yiaO)
          Length = 328

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 246 AEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLDAEQPFLARGVGHAHLPLQG 404
           A+   S +R G   M +S    F  L P   LLD   PFL R   HAH  L G
Sbjct: 72  AQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDV--PFLFRDTAHAHKTLDG 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,871,688
Number of Sequences: 219361
Number of extensions: 1714368
Number of successful extensions: 4514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4514
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)