ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags21k10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1964 Score = 611 bits (308), Expect = e-171 Identities = 485/544 (89%) Strand = Plus / Minus Query: 157 ctcacaaaagccctacacgatttttgtcatcggcaaagaagggcgttgatgactgataat 216 |||||||||||| ||||||||||| ||||| |||||| || |||||||||||||||| Sbjct: 1727 ctcacaaaagcctgacacgatttttctcatcacaaaagaatggtgttgatgactgataat 1668 Query: 217 catctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatcat 276 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1667 catctgtcccaaagtacctatccccaaactcacccatcccagggatgacgcggaaatcat 1608 Query: 277 cattcagaccaagctcaatctctgatgtcacaatcttgacccttgggaatctcttactga 336 |||||||||||| ||| || ||||||||||| ||||| || ||||| |||||||| |||| Sbjct: 1607 cattcagaccaaactcgatttctgatgtcacgatcttcactcttggaaatctcttgctga 1548 Query: 337 ctacatgcaccccttggggagctgatataagattgagaaatataatatttgcttcttgta 396 | |||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| |||| Sbjct: 1547 ccacatgcactccttggggagctgatataagattcagaaaaataatatttgtttcctgta 1488 Query: 397 cacgcttctccaagagaagagaaatagcttgaacagctgaatttcctgttcccaatatgg 456 ||| ||| | |||||| ||||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 1487 caccctttttcaagagtagagatatagcttgaacagctgaatttcctgttcccagtatgg 1428 Query: 457 ggtccagcaacagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagct 516 | |||| |||||| |||||||| ||||| |||||||| ||||||||||||||||| |||| Sbjct: 1427 gatccaacaacagcacatgcctgtttgcaatatctttcggtaaattgtgatagattagct 1368 Query: 517 gtttcccgtcatctccttccctgtgaataagaatcttcccaatctttatacctttacagc 576 |||| || | |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1367 gtttgccattgtctccttccctgtgaataagaatcttcccaatttttatacctttgcagc 1308 Query: 577 atgcccgcagagcattctccatactttcgccactcctaatcactgatatcccacataaac 636 ||||||||| |||||||||||||| || ||||| ||||||||||| || ||||| || | Sbjct: 1307 atgcccgcaatgcattctccatactctcaccacttctaatcactgagataccacacaatc 1248 Query: 637 tttttgagaaatccacaccagtgtaaacagatccagttggagtgatgacctgcttttccc 696 |||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1247 ttttggagaactctaccccagtgtaaaccgatccagttggagttatgacctgcttttcct 1188 Query: 697 tgaa 700 |||| Sbjct: 1187 tgaa 1184
>dbj|AK071021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080O08, full insert sequence Length = 1965 Score = 611 bits (308), Expect = e-171 Identities = 485/544 (89%) Strand = Plus / Minus Query: 157 ctcacaaaagccctacacgatttttgtcatcggcaaagaagggcgttgatgactgataat 216 |||||||||||| ||||||||||| ||||| |||||| || |||||||||||||||| Sbjct: 1727 ctcacaaaagcctgacacgatttttctcatcacaaaagaatggtgttgatgactgataat 1668 Query: 217 catctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatcat 276 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1667 catctgtcccaaagtacctatccccaaactcacccatcccagggatgacgcggaaatcat 1608 Query: 277 cattcagaccaagctcaatctctgatgtcacaatcttgacccttgggaatctcttactga 336 |||||||||||| ||| || ||||||||||| ||||| || ||||| |||||||| |||| Sbjct: 1607 cattcagaccaaactcgatttctgatgtcacgatcttcactcttggaaatctcttgctga 1548 Query: 337 ctacatgcaccccttggggagctgatataagattgagaaatataatatttgcttcttgta 396 | |||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| |||| Sbjct: 1547 ccacatgcactccttggggagctgatataagattcagaaaaataatatttgtttcctgta 1488 Query: 397 cacgcttctccaagagaagagaaatagcttgaacagctgaatttcctgttcccaatatgg 456 ||| ||| | |||||| ||||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 1487 caccctttttcaagagtagagatatagcttgaacagctgaatttcctgttcccagtatgg 1428 Query: 457 ggtccagcaacagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagct 516 | |||| |||||| |||||||| ||||| |||||||| ||||||||||||||||| |||| Sbjct: 1427 gatccaacaacagcacatgcctgtttgcaatatctttcggtaaattgtgatagattagct 1368 Query: 517 gtttcccgtcatctccttccctgtgaataagaatcttcccaatctttatacctttacagc 576 |||| || | |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1367 gtttgccattgtctccttccctgtgaataagaatcttcccaatttttatacctttgcagc 1308 Query: 577 atgcccgcagagcattctccatactttcgccactcctaatcactgatatcccacataaac 636 ||||||||| |||||||||||||| || ||||| ||||||||||| || ||||| || | Sbjct: 1307 atgcccgcaatgcattctccatactctcaccacttctaatcactgagataccacacaatc 1248 Query: 637 tttttgagaaatccacaccagtgtaaacagatccagttggagtgatgacctgcttttccc 696 |||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1247 ttttggagaactctaccccagtgtaaaccgatccagttggagttatgacctgcttttcct 1188 Query: 697 tgaa 700 |||| Sbjct: 1187 tgaa 1184
>dbj|AK119843.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-C12, full insert sequence Length = 2541 Score = 603 bits (304), Expect = e-169 Identities = 484/544 (88%) Strand = Plus / Minus Query: 157 ctcacaaaagccctacacgatttttgtcatcggcaaagaagggcgttgatgactgataat 216 |||||||||||| ||||||||||| ||||| |||||| || |||||||||||||||| Sbjct: 2351 ctcacaaaagcctgacacgatttttctcatcacaaaagaatggtgttgatgactgataat 2292 Query: 217 catctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatcat 276 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2291 catctgtcccaaagtacctatccccaaactcacccatcccagggatgacgcggaaatcat 2232 Query: 277 cattcagaccaagctcaatctctgatgtcacaatcttgacccttgggaatctcttactga 336 |||||||||||| ||| || ||||||||||| ||||| || ||||| |||||||| |||| Sbjct: 2231 cattcagaccaaactcgatttctgatgtcacgatcttcactcttggaaatctcttgctga 2172 Query: 337 ctacatgcaccccttggggagctgatataagattgagaaatataatatttgcttcttgta 396 | |||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| |||| Sbjct: 2171 ccacatgcactccttggggagctgatataagattcagaaaaataatatttgtttcctgta 2112 Query: 397 cacgcttctccaagagaagagaaatagcttgaacagctgaatttcctgttcccaatatgg 456 ||| ||| | |||||| ||||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 2111 caccctttttcaagagtagagatatagcttgaacagctgaatttcctgttcccagtatgg 2052 Query: 457 ggtccagcaacagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagct 516 | |||| | |||| |||||||| ||||| |||||||| ||||||||||||||||| |||| Sbjct: 2051 gatccaacgacagcacatgcctgtttgcaatatctttcggtaaattgtgatagattagct 1992 Query: 517 gtttcccgtcatctccttccctgtgaataagaatcttcccaatctttatacctttacagc 576 |||| || | |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1991 gtttgccattgtctccttccctgtgaataagaatcttcccaatttttatacctttgcagc 1932 Query: 577 atgcccgcagagcattctccatactttcgccactcctaatcactgatatcccacataaac 636 ||||||||| |||||||||||||| || ||||| ||||||||||| || ||||| || | Sbjct: 1931 atgcccgcaatgcattctccatactctcaccacttctaatcactgagataccacacaatc 1872 Query: 637 tttttgagaaatccacaccagtgtaaacagatccagttggagtgatgacctgcttttccc 696 |||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1871 ttttggagaactctaccccagtgtaaaccgatccagttggagttatgacctgcttttcct 1812 Query: 697 tgaa 700 |||| Sbjct: 1811 tgaa 1808
>dbj|AK103877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149N02, full insert sequence Length = 1978 Score = 545 bits (275), Expect = e-152 Identities = 476/543 (87%) Strand = Plus / Minus Query: 158 tcacaaaagccctacacgatttttgtcatcggcaaagaagggcgttgatgactgataatc 217 ||||||||||| ||||||||||| || ||| |||||| || ||||||||||||||||| Sbjct: 1646 tcacaaaagcctgacacgatttttctcgtcgcaaaagaatggtgttgatgactgataatc 1587 Query: 218 atctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatcatc 277 ||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct: 1586 atctgttccgaagtacctatctccaaactcacccattccagggatgacgcggaaatcatc 1527 Query: 278 attcagaccaagctcaatctctgatgtcacaatcttgacccttgggaatctcttactgac 337 |||||||||| ||||| ||||||||||| |||||||| || || |||||||| || || Sbjct: 1526 gttcagaccaaagtcaatttctgatgtcacgatcttgactctcggaaatctcttgctaac 1467 Query: 338 tacatgcaccccttggggagctgatataagattgagaaatataatatttgcttcttgtac 397 |||||||| ||||||||||||||||||||||| ||||| ||||| |||| ||| ||||| Sbjct: 1466 gacatgcactccttggggagctgatataagattcagaaagataatgtttgtttcctgtac 1407 Query: 398 acgcttctccaagagaagagaaatagcttgaacagctgaatttcctgttcccaatatggg 457 || ||||| |||||| || || ||||||||||||||||||||||||||||||| |||||| Sbjct: 1406 acccttcttcaagagtagggatatagcttgaacagctgaatttcctgttcccagtatggg 1347 Query: 458 gtccagcaacagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagctg 517 |||| ||| ||||||||||| ||||| |||||||| |||| |||||||||||| ||||| Sbjct: 1346 atccaacaatagaacatgcctgtttgctatatcttttggtacattgtgatagattagctg 1287 Query: 518 tttcccgtcatctccttccctgtgaataagaatcttcccaatctttatacctttacagca 577 ||| || | |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1286 tttgccattgtctccttctctgtgaataagaatcttcccaatttttatacctttacagca 1227 Query: 578 tgcccgcagagcattctccatactttcgccactcctaatcactgatatcccacataaact 637 |||||||| |||||||||||||| || ||||| ||||||||||| || || || || || Sbjct: 1226 tgcccgcaatgcattctccatactctcaccacttctaatcactgagataccgcacaatct 1167 Query: 638 ttttgagaaatccacaccagtgtaaacagatccagttggagtgatgacctgcttttccct 697 ||| ||||| || || |||||||||||||| ||||||||||| |||||||| |||||| | Sbjct: 1166 tttagagaactctaccccagtgtaaacagaaccagttggagttatgacctgtttttcctt 1107 Query: 698 gaa 700 ||| Sbjct: 1106 gaa 1104
>gb|BT018511.1| Zea mays clone EL01N0429H10.d mRNA sequence Length = 1721 Score = 504 bits (254), Expect = e-139 Identities = 467/538 (86%) Strand = Plus / Minus Query: 158 tcacaaaagccctacacgatttttgtcatcggcaaagaagggcgttgatgactgataatc 217 |||||| |||| ||||||||||| || || |||||| ||||| |||||||||||||| Sbjct: 1519 tcacaagagcctgacacgatttttatcgtcacaaaagaatggcgtcgatgactgataatc 1460 Query: 218 atctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatcatc 277 ||||||||||||||| || || ||||| || ||||||||||| | |||||||||||||| Sbjct: 1459 atctgttccaaagtatctgtctccaaattcgcccatcccaggcacaacacggaaatcatc 1400 Query: 278 attcagaccaagctcaatctctgatgtcacaatcttgacccttgggaatctcttactgac 337 ||| ||||||| ||||||||| || || || ||||| || || ||||||||||| || || Sbjct: 1399 atttagaccaaactcaatctccgaagtaacgatcttcactctagggaatctcttgctcac 1340 Query: 338 tacatgcaccccttggggagctgatataagattgagaaatataatatttgcttcttgtac 397 |||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| Sbjct: 1339 cacatgcactccttggggcgctgaaataagattaaggaatataatatttgcttcttgtac 1280 Query: 398 acgcttctccaagagaagagaaatagcttgaacagctgaatttcctgttcccaatatggg 457 || ||||| ||| ||||| || || || ||||| |||||||||||||||||||||||||| Sbjct: 1279 acccttcttcaatagaagggagatggcctgaactgctgaatttcctgttcccaatatggg 1220 Query: 458 gtccagcaacagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagctg 517 ||||| || ||||||||||| ||||| |||||||| |||||||| |||||||||||||| Sbjct: 1219 gtccaacagaagaacatgcctatttgcaatatcttttggtaaattttgatagatgagctg 1160 Query: 518 tttcccgtcatctccttccctgtgaataagaatcttcccaatctttatacctttacagca 577 || || | |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1159 ttgtccattgtctccttcccgatgaataagaatcttcccaatctttatacctttacagca 1100 Query: 578 tgcccgcagagcattctccatactttcgccactcctaatcactgatatcccacataaact 637 ||| || | ||||||||||| |||||||||||||| |||||||| | ||||| || || Sbjct: 1099 tgctcgtaacgcattctccatgctttcgccactcctgatcactgagacaccacacaacct 1040 Query: 638 ttttgagaaatccacaccagtgtaaacagatccagttggagtgatgacctgcttttcc 695 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1039 tttggagaactccacaccagtgtaaacagatccagtcggagtgatgacctgcttttcc 982
>gb|AY109641.1| Zea mays CL10913_1 mRNA sequence Length = 1055 Score = 264 bits (133), Expect = 4e-67 Identities = 205/229 (89%) Strand = Plus / Minus Query: 467 cagaacatgcctttttgcgatatctttgggtaaattgtgatagatgagctgtttcccgtc 526 |||||||||||| ||||| |||||||| |||||||| |||||||||||||||| || | Sbjct: 1055 cagaacatgcctatttgcaatatcttttggtaaattttgatagatgagctgttgtccatt 996 Query: 527 atctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcag 586 || ||||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 995 gtcaccttcccgatgaataagaatcttcccaatctttatacctttacagcatgcacgtag 936 Query: 587 agcattctccatactttcgccactcctaatcactgatatcccacataaactttttgagaa 646 |||||||||||||||||||||||||| |||||||| || ||||| || ||||| ||||| Sbjct: 935 tgcattctccatactttcgccactcctgatcactgagataccacacaaccttttggagaa 876 Query: 647 atccacaccagtgtaaacagatccagttggagtgatgacctgcttttcc 695 |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 875 ctccacaccagtgtaaacagacccagtcggagtgatgacctgcttttcc 827
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 230 bits (116), Expect = 5e-57 Identities = 170/188 (90%) Strand = Plus / Plus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| ||||| |||||| || ||||||||||||||||||||||| |||||| Sbjct: 9928388 acacgatttttctcatcacaaaagaatggtgttgatgactgataatcatctgtcccaaag 9928447 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 9928448 tacctatccccaaactcacccatcccagggatgacgcggaaatcatcattcagaccaaac 9928507 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 || || ||||||||||| ||||| || ||||| |||||||| ||||| |||||||| ||| Sbjct: 9928508 tcgatttctgatgtcacgatcttcactcttggaaatctcttgctgaccacatgcactcct 9928567 Query: 351 tggggagc 358 |||||||| Sbjct: 9928568 tggggagc 9928575 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 9929601 tctccttccctgtgaataagaatcttcccaatttttatacctttgcagcatgcccgcaat 9929660 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 9929661 gcattctccatactctcaccact 9929683 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| |||||||||| ||| ||||||| ||| | |||||| |||| Sbjct: 9929043 ctgatataagattcagaaaaataatatttgtttcctgtacaccctttttcaagagtagag 9929102 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 9929103 atatagcttgaacagctgaatttcctg 9929129 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| |||||| |||||||| ||||| |||||||| |||||| Sbjct: 9929443 cctgttcccagtatgggatccaacaacagcacatgcctgtttgcaatatctttcggtaaa 9929502 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 9929503 ttgtgatagattagctg 9929519 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| ||||||||||||||| |||| Sbjct: 9930823 ccagttggagttatgacctgcttttccttgaa 9930854 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Plus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacagatcc 670 ||||||||||| || ||||| || ||||| ||||| || || ||||||||||| ||||| Sbjct: 9930103 ctaatcactgagataccacacaatcttttggagaactctaccccagtgtaaaccgatcc 9930161
>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0521F09 Length = 164823 Score = 230 bits (116), Expect = 5e-57 Identities = 170/188 (90%) Strand = Plus / Plus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| ||||| |||||| || ||||||||||||||||||||||| |||||| Sbjct: 109350 acacgatttttctcatcacaaaagaatggtgttgatgactgataatcatctgtcccaaag 109409 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 109410 tacctatccccaaactcacccatcccagggatgacgcggaaatcatcattcagaccaaac 109469 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 || || ||||||||||| ||||| || ||||| |||||||| ||||| |||||||| ||| Sbjct: 109470 tcgatttctgatgtcacgatcttcactcttggaaatctcttgctgaccacatgcactcct 109529 Query: 351 tggggagc 358 |||||||| Sbjct: 109530 tggggagc 109537 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 110563 tctccttccctgtgaataagaatcttcccaatttttatacctttgcagcatgcccgcaat 110622 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 110623 gcattctccatactctcaccact 110645 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| |||||||||| ||| ||||||| ||| | |||||| |||| Sbjct: 110005 ctgatataagattcagaaaaataatatttgtttcctgtacaccctttttcaagagtagag 110064 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 110065 atatagcttgaacagctgaatttcctg 110091 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| |||||| |||||||| ||||| |||||||| |||||| Sbjct: 110405 cctgttcccagtatgggatccaacaacagcacatgcctgtttgcaatatctttcggtaaa 110464 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 110465 ttgtgatagattagctg 110481 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| ||||||||||||||| |||| Sbjct: 111785 ccagttggagttatgacctgcttttccttgaa 111816 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Plus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacagatcc 670 ||||||||||| || ||||| || ||||| ||||| || || ||||||||||| ||||| Sbjct: 111065 ctaatcactgagataccacacaatcttttggagaactctaccccagtgtaaaccgatcc 111123
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 230 bits (116), Expect = 5e-57 Identities = 170/188 (90%) Strand = Plus / Plus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| ||||| |||||| || ||||||||||||||||||||||| |||||| Sbjct: 3081 acacgatttttctcatcacaaaagaatggtgttgatgactgataatcatctgtcccaaag 3140 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 3141 tacctatccccaaactcacccatcccagggatgacgcggaaatcatcattcagaccaaac 3200 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 || || ||||||||||| ||||| || ||||| |||||||| ||||| |||||||| ||| Sbjct: 3201 tcgatttctgatgtcacgatcttcactcttggaaatctcttgctgaccacatgcactcct 3260 Query: 351 tggggagc 358 |||||||| Sbjct: 3261 tggggagc 3268 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 4294 tctccttccctgtgaataagaatcttcccaatttttatacctttgcagcatgcccgcaat 4353 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 4354 gcattctccatactctcaccact 4376 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| |||||||||| ||| ||||||| ||| | |||||| |||| Sbjct: 3736 ctgatataagattcagaaaaataatatttgtttcctgtacaccctttttcaagagtagag 3795 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 3796 atatagcttgaacagctgaatttcctg 3822 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| |||||| |||||||| ||||| |||||||| |||||| Sbjct: 4136 cctgttcccagtatgggatccaacaacagcacatgcctgtttgcaatatctttcggtaaa 4195 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 4196 ttgtgatagattagctg 4212 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| ||||||||||||||| |||| Sbjct: 5516 ccagttggagttatgacctgcttttccttgaa 5547 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Plus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacagatcc 670 ||||||||||| || ||||| || ||||| ||||| || || ||||||||||| ||||| Sbjct: 4796 ctaatcactgagataccacacaatcttttggagaactctaccccagtgtaaaccgatcc 4854
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 198 bits (100), Expect = 2e-47 Identities = 166/188 (88%) Strand = Plus / Plus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| || ||| |||||| || |||||||||||||||||||||||||| ||| Sbjct: 74799 acacgatttttctcgtcgcaaaagaatggtgttgatgactgataatcatctgttccgaag 74858 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 74859 tacctatctccaaactcacccattccagggatgacgcggaaatcatcgttcagaccaaag 74918 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 ||||| ||||||||||| |||||||| || || |||||||| || || |||||||| ||| Sbjct: 74919 tcaatttctgatgtcacgatcttgactctcggaaatctcttgctaacgacatgcactcct 74978 Query: 351 tggggagc 358 |||||||| Sbjct: 74979 tggggagc 74986 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 76124 tctccttctctgtgaataagaatcttcccaatttttatacctttacagcatgcccgcaat 76183 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 76184 gcattctccatactctcaccact 76206 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| ||||| |||| ||| ||||||| ||||| |||||| || | Sbjct: 75571 ctgatataagattcagaaagataatgtttgtttcctgtacacccttcttcaagagtaggg 75630 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 75631 atatagcttgaacagctgaatttcctg 75657 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| ||| ||||||||||| ||||| |||||||| |||| | Sbjct: 75966 cctgttcccagtatgggatccaacaatagaacatgcctgtttgctatatcttttggtaca 76025 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 76026 ttgtgatagattagctg 76042 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| |||||||| |||||| |||| Sbjct: 77457 ccagttggagttatgacctgtttttccttgaa 77488 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacaga 667 ||||||||||| || || || || ||||| ||||| || || |||||||||||||| Sbjct: 76640 ctaatcactgagataccgcacaatcttttagagaactctaccccagtgtaaacaga 76695
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 198 bits (100), Expect = 2e-47 Identities = 166/188 (88%) Strand = Plus / Minus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| || ||| |||||| || |||||||||||||||||||||||||| ||| Sbjct: 8943428 acacgatttttctcgtcgcaaaagaatggtgttgatgactgataatcatctgttccgaag 8943369 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 8943368 tacctatctccaaactcacccattccagggatgacgcggaaatcatcgttcagaccaaag 8943309 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 ||||| ||||||||||| |||||||| || || |||||||| || || |||||||| ||| Sbjct: 8943308 tcaatttctgatgtcacgatcttgactctcggaaatctcttgctaacgacatgcactcct 8943249 Query: 351 tggggagc 358 |||||||| Sbjct: 8943248 tggggagc 8943241 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Minus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 8942103 tctccttctctgtgaataagaatcttcccaatttttatacctttacagcatgcccgcaat 8942044 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 8942043 gcattctccatactctcaccact 8942021 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| ||||| |||| ||| ||||||| ||||| |||||| || | Sbjct: 8942656 ctgatataagattcagaaagataatgtttgtttcctgtacacccttcttcaagagtaggg 8942597 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 8942596 atatagcttgaacagctgaatttcctg 8942570 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| ||| ||||||||||| ||||| |||||||| |||| | Sbjct: 8942261 cctgttcccagtatgggatccaacaatagaacatgcctgtttgctatatcttttggtaca 8942202 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 8942201 ttgtgatagattagctg 8942185 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacaga 667 ||||||||||| || || || || ||||| ||||| || || |||||||||||||| Sbjct: 8941587 ctaatcactgagataccgcacaatcttttagagaactctaccccagtgtaaacaga 8941532 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| |||||||| |||||| |||| Sbjct: 8940770 ccagttggagttatgacctgtttttccttgaa 8940739
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 198 bits (100), Expect = 2e-47 Identities = 166/188 (88%) Strand = Plus / Minus Query: 171 acacgatttttgtcatcggcaaagaagggcgttgatgactgataatcatctgttccaaag 230 ||||||||||| || ||| |||||| || |||||||||||||||||||||||||| ||| Sbjct: 9015091 acacgatttttctcgtcgcaaaagaatggtgttgatgactgataatcatctgttccgaag 9015032 Query: 231 tacctatccccaaactcacccatcccagggatgacacggaaatcatcattcagaccaagc 290 |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 9015031 tacctatctccaaactcacccattccagggatgacgcggaaatcatcgttcagaccaaag 9014972 Query: 291 tcaatctctgatgtcacaatcttgacccttgggaatctcttactgactacatgcacccct 350 ||||| ||||||||||| |||||||| || || |||||||| || || |||||||| ||| Sbjct: 9014971 tcaatttctgatgtcacgatcttgactctcggaaatctcttgctaacgacatgcactcct 9014912 Query: 351 tggggagc 358 |||||||| Sbjct: 9014911 tggggagc 9014904 Score = 117 bits (59), Expect = 5e-23 Identities = 77/83 (92%) Strand = Plus / Minus Query: 528 tctccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcaga 587 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9013766 tctccttctctgtgaataagaatcttcccaatttttatacctttacagcatgcccgcaat 9013707 Query: 588 gcattctccatactttcgccact 610 |||||||||||||| || ||||| Sbjct: 9013706 gcattctccatactctcaccact 9013684 Score = 93.7 bits (47), Expect = 7e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 358 ctgatataagattgagaaatataatatttgcttcttgtacacgcttctccaagagaagag 417 ||||||||||||| ||||| ||||| |||| ||| ||||||| ||||| |||||| || | Sbjct: 9014319 ctgatataagattcagaaagataatgtttgtttcctgtacacccttcttcaagagtaggg 9014260 Query: 418 aaatagcttgaacagctgaatttcctg 444 | ||||||||||||||||||||||||| Sbjct: 9014259 atatagcttgaacagctgaatttcctg 9014233 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 441 cctgttcccaatatggggtccagcaacagaacatgcctttttgcgatatctttgggtaaa 500 |||||||||| |||||| |||| ||| ||||||||||| ||||| |||||||| |||| | Sbjct: 9013924 cctgttcccagtatgggatccaacaatagaacatgcctgtttgctatatcttttggtaca 9013865 Query: 501 ttgtgatagatgagctg 517 ||||||||||| ||||| Sbjct: 9013864 ttgtgatagattagctg 9013848 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 612 ctaatcactgatatcccacataaactttttgagaaatccacaccagtgtaaacaga 667 ||||||||||| || || || || ||||| ||||| || || |||||||||||||| Sbjct: 9013250 ctaatcactgagataccgcacaatcttttagagaactctaccccagtgtaaacaga 9013195 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 669 ccagttggagtgatgacctgcttttccctgaa 700 ||||||||||| |||||||| |||||| |||| Sbjct: 9012433 ccagttggagttatgacctgtttttccttgaa 9012402
>dbj|AP006126.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210b, complete sequence Length = 51872 Score = 111 bits (56), Expect = 3e-21 Identities = 86/96 (89%) Strand = Plus / Minus Query: 215 atcatctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatc 274 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| Sbjct: 7722 atcatctgttccaaagtacctatccccaaactcacccatcccaggtacgacgcggaaatc 7663 Query: 275 atcattcagaccaagctcaatctctgatgtcacaat 310 ||||||| ||| |||||||| ||||||||||| Sbjct: 7662 ttcattcaaaccggtgtcaatctcagatgtcacaat 7627 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||||||||| ||||||||||| |||||||| ||||| || || | |||| Sbjct: 7112 ccttctctatgaataagaattttcccaatcttgatacctttgcagcaggctcgtaaagca 7053 Query: 591 ttctccatactttcgccact 610 || ||||| ||||| ||||| Sbjct: 7052 ttttccatgctttccccact 7033
>ref|NM_179117.1| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT4G26510 transcript variant AT4G26510.2 mRNA, complete cds Length = 1837 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 1145 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 1086 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 1085 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 1026 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 1025 acaccagaatacacacatccggttggagtaatcacttgcttttc 982
>ref|NM_118784.2| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT4G26510 transcript variant AT4G26510.1 mRNA, complete cds Length = 1895 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 1203 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 1144 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 1143 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 1084 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 1083 acaccagaatacacacatccggttggagtaatcacttgcttttc 1040
>gb|BT022059.1| Arabidopsis thaliana At4g26510 gene, complete cds Length = 1410 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 1088 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 1029 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 1028 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 969 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 968 acaccagaatacacacatccggttggagtaatcacttgcttttc 925
>gb|BT005738.1| Arabidopsis thaliana clone RAFL15-43-C05 (R20963) At4g26510 mRNA, complete sequence Length = 1806 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 1146 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 1087 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 1086 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 1027 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 1026 acaccagaatacacacatccggttggagtaatcacttgcttttc 983
>gb|AY086133.1| Arabidopsis thaliana clone 21702 mRNA, complete sequence Length = 1831 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 1203 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 1144 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 1143 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 1084 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 1083 acaccagaatacacacatccggttggagtaatcacttgcttttc 1040
>gb|AF116860.1|AF116860 Arabidopsis thaliana uracil phosphoribosyltransferase 1 (UPT1) mRNA, partial cds Length = 914 Score = 87.7 bits (44), Expect = 5e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 200 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 141 Query: 591 ttctccatactttcgccactcctaatcactgatatcccacataaactttttgagaaatcc 650 |||||||| || || |||||||||||||| || | |||||||| | ||| |||||||| Sbjct: 140 ttctccatgctctcaccactcctaatcaccgagacaccacataaccgtttacagaaatcc 81 Query: 651 acaccagtgtaaacagatccagttggagtgatgacctgcttttc 694 ||||||| || ||| |||| |||||||| || || |||||||| Sbjct: 80 acaccagaatacacacatccggttggagtaatcacttgcttttc 37
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 81.8 bits (41), Expect = 3e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 215 atcatctgttccaaagtacctatccccaaactcacccatcccagggatgacacggaaatc 274 |||||||||||||||||||| ||| || ||||| ||||| || || || ||||||||||| Sbjct: 78280 atcatctgttccaaagtaccgatctccgaactcgcccatgcccggtataacacggaaatc 78221 Query: 275 atcattcagaccaagctcaatctctgatgtcac 307 ||||||| ||||| ||| ||||| |||||||| Sbjct: 78220 ttcattcaaaccaatctctatctcagatgtcac 78188 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 552 ttcccaatctttatacctttacagcatgcccgcagagcattctccatactttcgccact 610 ||||||||||| ||||||||||||||||| | | |||||||||||||| || ||||| Sbjct: 77633 ttcccaatcttaatacctttacagcatgctcttaaggcattctccatactctccccact 77575
>gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0010B06, complete sequence Length = 129310 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 546 agaatcttcccaatctttatacctttacagcatgcccgcagagcattctccatactttcg 605 |||||||| ||||| ||||| |||||||| || || |||| ||||||||||||||||| Sbjct: 62440 agaatcttgccaatttttattcctttacaacaagcacgcaatgcattctccatactttca 62381 Query: 606 ccact 610 ||||| Sbjct: 62380 ccact 62376
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 546 agaatcttcccaatctttatacctttacagcatgcccgcagagcattctccatactttcg 605 |||||||| ||||| ||||| |||||||| || || |||| ||||||||||||||||| Sbjct: 19279224 agaatcttgccaatttttattcctttacaacaagcacgcaatgcattctccatactttca 19279165 Query: 606 ccact 610 ||||| Sbjct: 19279164 ccact 19279160
>dbj|AK102065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082E21, full insert sequence Length = 1850 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 546 agaatcttcccaatctttatacctttacagcatgcccgcagagcattctccatactttcg 605 |||||||| ||||| ||||| |||||||| || || |||| ||||||||||||||||| Sbjct: 1231 agaatcttgccaatttttattcctttacaacaagcacgcaatgcattctccatactttca 1172 Query: 606 ccact 610 ||||| Sbjct: 1171 ccact 1167
>ref|NM_202307.1| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT1G55810 transcript variant AT1G55810.2 mRNA, complete cds Length = 2274 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 1689 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 1630 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 1629 ttctccatact 1619 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1926 atctctgaagtcacaatctttatccttgggaa 1895
>ref|NM_202308.1| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT1G55810 transcript variant AT1G55810.3 mRNA, complete cds Length = 1870 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 1285 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 1226 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 1225 ttctccatact 1215 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1522 atctctgaagtcacaatctttatccttgggaa 1491
>ref|NM_104458.3| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT1G55810 transcript variant AT1G55810.1 mRNA, complete cds Length = 1768 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 1183 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 1124 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 1123 ttctccatact 1113 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1420 atctctgaagtcacaatctttatccttgggaa 1389
>gb|AY122946.1| Arabidopsis thaliana putative uracil phosphoribosyltransferase (At1g55810) mRNA, complete cds Length = 1432 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 1079 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 1020 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 1019 ttctccatact 1009 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1316 atctctgaagtcacaatctttatccttgggaa 1285
>gb|AY072218.1| Arabidopsis thaliana putative uracil phosphoribosyltransferase (At1g55810) mRNA, complete cds Length = 1785 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 1183 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 1124 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 1123 ttctccatact 1113 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1420 atctctgaagtcacaatctttatccttgggaa 1389
>emb|BX817409.1|CNS0AB46 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL20ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 747 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 268 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 209 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 208 ttctccatact 198 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 505 atctctgaagtcacaatctttatccttgggaa 474
>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence Length = 109171 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 101545 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 101486 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 101485 ttctccatact 101475 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 102060 atctctgaagtcacaatctttatccttgggaa 102029
>gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana BAC F14J16 from chromosome I, complete sequence Length = 106320 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| || ||||| |||||||||||||| || || ||||| |||||||| | ||||| Sbjct: 11996 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgctctaagagcg 11937 Query: 591 ttctccatact 601 ||||||||||| Sbjct: 11936 ttctccatact 11926 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 12511 atctctgaagtcacaatctttatccttgggaa 12480
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 84449 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 84390 Query: 591 ttctccat 598 |||||||| Sbjct: 84389 ttctccat 84382
>emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project) Length = 92657 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 16316 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 16257 Query: 591 ttctccat 598 |||||||| Sbjct: 16256 ttctccat 16249
>emb|AL022223.3|ATM3E9 Arabidopsis thaliana DNA chromosome 4, P1 clone M3E9 (ESSA project) Length = 80677 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Plus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgcccgcagagca 590 ||||| |||||||| || |||||||| ||||| |||||||| || ||||| || | ||| Sbjct: 21959 ccttctctgtgaattaggatcttcccgatcttgatacctttgcaacatgctcgtaacgca 22018 Query: 591 ttctccat 598 |||||||| Sbjct: 22019 ttctccat 22026
>gb|AY105959.1| Zea mays PCO087306 mRNA sequence Length = 1804 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Minus Query: 540 tgaataagaatcttcccaatctttatacctttacagcatgcccgcagagcattctccata 599 ||||| ||||| |||||||| ||||| |||||||| || || |||| || ||||||||| Sbjct: 1206 tgaattagaattttcccaatttttattcctttacaacaagcacgcaatgcgttctccata 1147 Query: 600 ctttcgccact 610 || || ||||| Sbjct: 1146 ctctcaccact 1136
>gb|AC166815.6| Mus musculus chromosome 18, clone RP23-373L14, complete sequence Length = 137949 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 372 agaaatataatatttgcttctt 393 |||||||||||||||||||||| Sbjct: 16894 agaaatataatatttgcttctt 16873
>gb|AC134831.3| Mus musculus BAC clone RP24-500P4 from chromosome 18, complete sequence Length = 188380 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 372 agaaatataatatttgcttctt 393 |||||||||||||||||||||| Sbjct: 100577 agaaatataatatttgcttctt 100556
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 478 tttttgcgatatctttgggtaa 499 |||||||||||||||||||||| Sbjct: 80403 tttttgcgatatctttgggtaa 80424
>emb|BX815224.1|CNS0ABH0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZF06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1736 Score = 44.1 bits (22), Expect = 0.61 Identities = 43/50 (86%) Strand = Plus / Minus Query: 531 ccttccctgtgaataagaatcttcccaatctttatacctttacagcatgc 580 ||||| || ||||| |||||||||||||| || || ||||| |||||||| Sbjct: 1288 ccttctctatgaatcagaatcttcccaattttgatgcctttgcagcatgc 1239 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 294 atctctgatgtcacaatcttgacccttgggaa 325 |||||||| ||||||||||| | ||||||||| Sbjct: 1525 atctctgaagtcacaatctttatccttgggaa 1494
>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3' end of the KCNN3 gene for potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, a novel gene and the 5' end of the ADAR gene for adenosine deaminase, RNA-specific, complete sequence Length = 173014 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ttctccaaaagaatttgaata 119 ||||||||||||||||||||| Sbjct: 155032 ttctccaaaagaatttgaata 155052
>gb|AC099755.2| Homo sapiens chromosome 1 clone RP11-434N15, complete sequence Length = 154994 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 550 tcttcccaatctttatacctt 570 ||||||||||||||||||||| Sbjct: 119968 tcttcccaatctttatacctt 119948
>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence Length = 177300 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 cttcccaatctttataccttt 571 ||||||||||||||||||||| Sbjct: 84528 cttcccaatctttataccttt 84548
>gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-activated potassium channel (KCNN3) gene, complete cds Length = 163217 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ttctccaaaagaatttgaata 119 ||||||||||||||||||||| Sbjct: 129579 ttctccaaaagaatttgaata 129559
>gb|AC000107.2|AC000107 Genomic sequence for Arabidopsis thaliana BAC F17F8 from chromosome I, complete sequence Length = 102393 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 tgtaaaaataaaatttctcca 105 ||||||||||||||||||||| Sbjct: 68864 tgtaaaaataaaatttctcca 68844
>emb|AL121790.4|CNS01DSI Human chromosome 14 DNA sequence BAC R-356O9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203650 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 cttcccaatctttataccttt 571 ||||||||||||||||||||| Sbjct: 4970 cttcccaatctttataccttt 4990
>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201794 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 551 cttcccaatctttataccttt 571 ||||||||||||||||||||| Sbjct: 3553 cttcccaatctttataccttt 3533
>ref|XM_635995.1| Dictyostelium discoideum hypothetical protein (DDB0206081), partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 taaaaataaaatttctccaa 106 |||||||||||||||||||| Sbjct: 829 taaaaataaaatttctccaa 810
>gb|AY634226.1| Oikopleura dioica transposon LTR retrotransposon Tor3, partial sequence Length = 3500 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 aaaaataaaatttctccaaaagaatttg 115 |||||||||||||||| |||| |||||| Sbjct: 2978 aaaaataaaatttctcaaaaataatttg 2951
>gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, complete sequence Length = 180315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 agcatgcccgcagagcattc 593 |||||||||||||||||||| Sbjct: 167672 agcatgcccgcagagcattc 167653
>gb|AY541809.1| Acinetobacter baumannii plasmid pMAC, complete sequence Length = 9540 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 taaaaataaaatttctccaaaagaattt 114 |||||||||||||||| |||||||||| Sbjct: 7639 taaaaataaaatttcttgaaaagaattt 7612
>gb|AC165279.3| Mus musculus chromosome 15, clone RP23-259J10, complete sequence Length = 176055 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaatcatcattcagaccaag 289 |||||||||||||||||||| Sbjct: 95798 aaatcatcattcagaccaag 95817
>emb|CR388131.10| Zebrafish DNA sequence from clone DKEY-114G9 in linkage group 1, complete sequence Length = 169443 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 atgtaaaaataaaatttctc 103 |||||||||||||||||||| Sbjct: 120942 atgtaaaaataaaatttctc 120961
>emb|CR356234.11| Zebrafish DNA sequence from clone CH211-93J11 in linkage group 2, complete sequence Length = 151567 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tccccaaactcacccatccc 256 |||||||||||||||||||| Sbjct: 60397 tccccaaactcacccatccc 60378
>gb|AC131709.3| Mus musculus BAC clone RP23-198J15 from 18, complete sequence Length = 164456 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 598 tactttcgccactcctaatcactg 621 ||||||||||||||||| |||||| Sbjct: 99537 tactttcgccactcctattcactg 99560
>gb|AC129541.15| Mus musculus chromosome 15, clone RP23-248M12, complete sequence Length = 197803 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaatcatcattcagaccaag 289 |||||||||||||||||||| Sbjct: 36798 aaatcatcattcagaccaag 36817
>ref|XM_659974.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50337) partial mRNA Length = 1041 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 gatataagattgagaaatataatatttg 387 ||||||| | |||||||||||||||||| Sbjct: 821 gatataataatgagaaatataatatttg 848
>gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, complete sequence Length = 75539 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tttctcacaaaagccctaca 173 |||||||||||||||||||| Sbjct: 24232 tttctcacaaaagccctaca 24213
>emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in linkage group 17, complete sequence Length = 159225 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tccaaaagaatttgaataat 121 |||||||||||||||||||| Sbjct: 57389 tccaaaagaatttgaataat 57370
>emb|AL451073.17| Human DNA sequence from clone RP11-384A24 on chromosome 6 Contains part of the PTPRK gene for protein tyrosine phosphatase receptor type K (R-PTP-KAPPA), complete sequence Length = 121208 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 ttgggaatgtaaaaataaaatttc 101 |||||||||||| ||||||||||| Sbjct: 93673 ttgggaatgtaagaataaaatttc 93650
>emb|AL160166.10| Human DNA sequence from clone RP11-159N19 on chromosome 9, complete sequence Length = 156964 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 aagagaagagaaatagcttg 427 |||||||||||||||||||| Sbjct: 141254 aagagaagagaaatagcttg 141235
>gb|AC133140.2| Homo sapiens chromosome 3 clone RP11-91E8, complete sequence Length = 56935 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ttcccaatctttataccttt 571 |||||||||||||||||||| Sbjct: 14453 ttcccaatctttataccttt 14472
>emb|AL050348.21|HSDJ447F3 Human DNA sequence from clone RP3-447F3 on chromosome 20 Contains the HNRPA1P3 gene for heterogenous nuclear ribonucleoprotein A1 pseudogene 3, the C20orf168 gene for a novel protein with Kunitz/Bovine pancreatic trypsin inhibitor domain, the WFDC3 gene for WAP four-disulfide core domain 3, the C20orf167 gene for a novel protein similar to synaptotagmin 1, the UBE2C gene for ubiquitin-conjugating enzyme E2 (H10), the TNNC2 gene for fast troponin C2 and two CpG islands, complete sequence Length = 97385 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaaagaatttgaataatgcc 124 |||||||||||||||||||| Sbjct: 77239 aaaagaatttgaataatgcc 77220
>emb|AL080278.7|HSDJ691N7 Human DNA sequence from clone RP4-691N7 on chromosome 1p31.2-32.3 Contains ESTs, CA repeat (D1S2665), STSs and GSSs, complete sequence Length = 104513 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 atataagattgagaaatata 380 |||||||||||||||||||| Sbjct: 84997 atataagattgagaaatata 84978
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 aaataaaatttctccaaaagaatt 113 ||||||||||||| |||||||||| Sbjct: 258232 aaataaaatttcttcaaaagaatt 258209
>emb|CR392008.7| Zebrafish DNA sequence from clone DKEY-97G11 in linkage group 5, complete sequence Length = 68693 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aaaataaaatttctccaaaagaat 112 |||||||||||| ||||||||||| Sbjct: 66268 aaaataaaatttttccaaaagaat 66245
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 gagtttgggaatgtaaaaataaaa 97 ||||||||||||||||||| |||| Sbjct: 28317 gagtttgggaatgtaaaaaaaaaa 28294
>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence Length = 194619 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aatttctccaaaagaatttg 115 |||||||||||||||||||| Sbjct: 106302 aatttctccaaaagaatttg 106283
>gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, complete sequence Length = 93844 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aatttctccaaaagaatttg 115 |||||||||||||||||||| Sbjct: 42033 aatttctccaaaagaatttg 42014
>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence Length = 172180 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aatttctccaaaagaatttg 115 |||||||||||||||||||| Sbjct: 7903 aatttctccaaaagaatttg 7922
>gb|AC025188.8| Homo sapiens chromosome 5 clone CTD-2384B11, complete sequence Length = 143335 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gggcaattttctcacaaaag 166 |||||||||||||||||||| Sbjct: 17388 gggcaattttctcacaaaag 17369
>ref|XM_682706.1| PREDICTED: Danio rerio similar to Microtubule-associated serine/threonine-protein kinase 2 (LOC559371), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tccccaaactcacccatccc 256 |||||||||||||||||||| Sbjct: 673 tccccaaactcacccatccc 692
>gb|AC026706.5|AC026706 Homo sapiens chromosome 5 clone CTD-2068N7, complete sequence Length = 131370 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gggcaattttctcacaaaag 166 |||||||||||||||||||| Sbjct: 3039 gggcaattttctcacaaaag 3058
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 gattgagaaatataatatttgctt 390 ||||||||||||| |||||||||| Sbjct: 20059884 gattgagaaatattatatttgctt 20059861
>gb|AF326829.1|AF326829 Secale cereale OPF07 RAPD marker sequence Length = 1987 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 aaaaataaaatttctccaaa 107 |||||||||||||||||||| Sbjct: 286 aaaaataaaatttctccaaa 267
>gb|AC154678.2| Mus musculus BAC clone RP24-302G10 from chromosome 16, complete sequence Length = 198982 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 atttctccaaaagaatttgaataa 120 ||||||||| |||||||||||||| Sbjct: 79665 atttctccacaagaatttgaataa 79642
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 gattgagaaatataatatttgctt 390 ||||||||||||| |||||||||| Sbjct: 57846 gattgagaaatattatatttgctt 57823
>gb|AC011739.7| Homo sapiens BAC clone RP11-68H19 from 2, complete sequence Length = 171811 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaataaaatttctccaaaag 109 |||||||||||||||||||| Sbjct: 74695 aaataaaatttctccaaaag 74676
>emb|AJ515536.1|AHI515536 Antirrhinum hispanicum slf-S5 gene for S locus F-box (SLF)-S5 protein and slf-S5A gene for S locus F-box (SLF)-S5A protein Length = 71543 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 aaataaaatttctccaaaagaatt 113 |||||||||||| ||||||||||| Sbjct: 58420 aaataaaatttcaccaaaagaatt 58397 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 aaataaaatttctccaaaagaatt 113 |||||||||||| ||||||||||| Sbjct: 51760 aaataaaatttcaccaaaagaatt 51737
>emb|AJ009975.1|ZMO009975 Zymomonas mobilis ATCC 10988 cryptic plasmid pZMO1 encoding Rep-like protein Length = 1651 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gattgagaaatataatattt 386 |||||||||||||||||||| Sbjct: 825 gattgagaaatataatattt 806
>emb|BX005220.7| Zebrafish DNA sequence from clone DKEY-82D4 in linkage group 1, complete sequence Length = 170985 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 atgtaaaaataaaatttctc 103 |||||||||||||||||||| Sbjct: 117905 atgtaaaaataaaatttctc 117924
>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence Length = 200174 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cagcaacagaacatgccttt 480 |||||||||||||||||||| Sbjct: 139763 cagcaacagaacatgccttt 139782
>gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, complete sequence Length = 260404 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 agcatgcccgcagagcattc 593 |||||||||||||||||||| Sbjct: 163938 agcatgcccgcagagcattc 163957
>tpe|BN000546.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx17 gene for class III peroxidase 17 precursor, exons 1-4 Length = 4115 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 gattgagaaatataatatttgctt 390 ||||||||||||| |||||||||| Sbjct: 1735 gattgagaaatattatatttgctt 1712
>gb|AC108796.10| Mus musculus chromosome 1, clone RP23-349L18, complete sequence Length = 188713 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 agcatgcccgcagagcattc 593 |||||||||||||||||||| Sbjct: 178457 agcatgcccgcagagcattc 178476
>gb|AC154608.3| Mus musculus BAC clone RP23-334N8 from chromosome 16, complete sequence Length = 212928 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 ccttccctgtgaataagaat 550 |||||||||||||||||||| Sbjct: 63913 ccttccctgtgaataagaat 63932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,131,718 Number of Sequences: 3902068 Number of extensions: 8131718 Number of successful extensions: 191729 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 191172 Number of HSP's gapped (non-prelim): 553 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
