>gb|BT018843.1| Zea mays clone EL01N0553G03.d mRNA sequence
          Length = 2072

 Score =  107 bits (54), Expect = 4e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                        
Query: 444  tcctcttgaatctattatcagaatcagtctgagcaagttcagagcagataatacctcttc 503
            |||||||||||||||||||||||| | ||| |||||||| ||||| |||| ||||| |||
Sbjct: 1700 tcctcttgaatctattatcagaataaatcttagcaagtttagagctgatattacctgttc 1641

                                          
Query: 504  actgtgatcacgaagacaaggaggaccacc 533
            |||||||||| |||| ||||||||||||||
Sbjct: 1640 actgtgatcaggaaggcaaggaggaccacc 1611



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                        
Query: 238  cctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacaggattt 297
            |||||||||||||||||||||||||| ||||||||||  || || || |||||| |||||
Sbjct: 1906 cctttcatcttttcctccaccaactcgatgcagcggtatagcaccagttgaacaagattt 1847

                       
Query: 298  aacaagcacac 308
            |||| ||||||
Sbjct: 1846 aacatgcacac 1836

>ref|XM_481321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1955

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                        
Query: 435  tgatctggatcctcttgaatctattatcagaatcagtctgagcaagttcagagcagataa 494
            |||||| |||||||||||||||||||||||||  | ||  ||||| |||| ||| |||||
Sbjct: 1641 tgatcttgatcctcttgaatctattatcagaacaaatcgcagcaaattcaaagctgataa 1582

                                                   
Query: 495  tacctcttcactgtgatcacgaagacaaggaggaccacc 533
            ||||| |||||  |||||| ||||||||||||| |||||
Sbjct: 1581 tacctgttcaccatgatcaggaagacaaggagggccacc 1543



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 235  aaacctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacagga 294
            ||||||||||||||||||||  ||| ||||||||||||||  | |||||  |||||||||
Sbjct: 1841 aaacctttcatcttttcctctgccagctcaatgcagcggtacaatactaattgaacagga 1782

                         
Query: 295  tttaacaagcaca 307
            |||||| ||||||
Sbjct: 1781 tttaacgagcaca 1769

>dbj|AK073404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043G13, full
            insert sequence
          Length = 1957

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                        
Query: 435  tgatctggatcctcttgaatctattatcagaatcagtctgagcaagttcagagcagataa 494
            |||||| |||||||||||||||||||||||||  | ||  ||||| |||| ||| |||||
Sbjct: 1642 tgatcttgatcctcttgaatctattatcagaacaaatcgcagcaaattcaaagctgataa 1583

                                                   
Query: 495  tacctcttcactgtgatcacgaagacaaggaggaccacc 533
            ||||| |||||  |||||| ||||||||||||| |||||
Sbjct: 1582 tacctgttcaccatgatcaggaagacaaggagggccacc 1544



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 235  aaacctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacagga 294
            ||||||||||||||||||||  ||| ||||||||||||||  | |||||  |||||||||
Sbjct: 1842 aaacctttcatcttttcctctgccagctcaatgcagcggtacaatactaattgaacagga 1783

                         
Query: 295  tttaacaagcaca 307
            |||||| ||||||
Sbjct: 1782 tttaacgagcaca 1770

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 235      aaacctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacagga 294
                ||||||||||||||||||||  ||| ||||||||||||||  | |||||  |||||||||
Sbjct: 11551358 aaacctttcatcttttcctctgccagctcaatgcagcggtacaatactaattgaacagga 11551417

                             
Query: 295      tttaacaagcaca 307
                |||||| ||||||
Sbjct: 11551418 tttaacgagcaca 11551430



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 445      cctcttgaatctattatcagaatcagtctgagcaagttcagagcagataatacct 499
                ||||||||||||||||||||||  | ||  ||||| |||| ||| ||||||||||
Sbjct: 11552133 cctcttgaatctattatcagaacaaatcgcagcaaattcaaagctgataatacct 11552187

>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                          
Query: 235    aaacctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacagga 294
              ||||||||||||||||||||  ||| ||||||||||||||  | |||||  |||||||||
Sbjct: 105492 aaacctttcatcttttcctctgccagctcaatgcagcggtacaatactaattgaacagga 105551

                           
Query: 295    tttaacaagcaca 307
              |||||| ||||||
Sbjct: 105552 tttaacgagcaca 105564



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 445    cctcttgaatctattatcagaatcagtctgagcaagttcagagcagataatacct 499
              ||||||||||||||||||||||  | ||  ||||| |||| ||| ||||||||||
Sbjct: 106267 cctcttgaatctattatcagaacaaatcgcagcaaattcaaagctgataatacct 106321

>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                         
Query: 235   aaacctttcatcttttcctccaccaactcaatgcagcggtgaagtactagctgaacagga 294
             ||||||||||||||||||||  ||| ||||||||||||||  | |||||  |||||||||
Sbjct: 11629 aaacctttcatcttttcctctgccagctcaatgcagcggtacaatactaattgaacagga 11688

                          
Query: 295   tttaacaagcaca 307
             |||||| ||||||
Sbjct: 11689 tttaacgagcaca 11701



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 445   cctcttgaatctattatcagaatcagtctgagcaagttcagagcagataatacct 499
             ||||||||||||||||||||||  | ||  ||||| |||| ||| ||||||||||
Sbjct: 12404 cctcttgaatctattatcagaacaaatcgcagcaaattcaaagctgataatacct 12458

>gb|AC102150.10| Mus musculus chromosome 7, clone RP23-310N5, complete sequence
          Length = 182393

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 444    tcctcttgaatctattatcaga 465
              ||||||||||||||||||||||
Sbjct: 130401 tcctcttgaatctattatcaga 130380

>gb|AC121900.2| Mus musculus BAC clone RP24-167E15 from 7, complete sequence
          Length = 170266

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 444   tcctcttgaatctattatcaga 465
             ||||||||||||||||||||||
Sbjct: 33612 tcctcttgaatctattatcaga 33591

>emb|AL589652.13| Mouse DNA sequence from clone RP23-369L6 on chromosome X, complete
              sequence
          Length = 199294

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 303    gcacaccatctgattttcttcc 324
              ||||||||||||||||||||||
Sbjct: 109672 gcacaccatctgattttcttcc 109651

>gb|AC024914.48| Mus musculus BAC Clone 262c6 RPCI-23, complete sequence
          Length = 205922

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 470    gtctgagcaagttcagagcag 490
              |||||||||||||||||||||
Sbjct: 190583 gtctgagcaagttcagagcag 190603

>emb|AL606528.7| Mouse DNA sequence from clone RP23-45H23 on chromosome 13 Contains a
              ribosomal protein 7A (Rpl7a) pseudogene and a novel gene
              (2610307P16Rik), complete sequence
          Length = 148066

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 470    gtctgagcaagttcagagcag 490
              |||||||||||||||||||||
Sbjct: 110043 gtctgagcaagttcagagcag 110023

>ref|NM_105444.2| Arabidopsis thaliana unknown protein AT1G67760 mRNA, complete cds
          Length = 697

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 atcagaatactgatgaatga 179
           ||||||||||||||||||||
Sbjct: 578 atcagaatactgatgaatga 597

>gb|U64852.3| Caenorhabditis elegans cosmid W01A11, complete sequence
          Length = 42924

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ttcaatcagaatactgatga 175
             ||||||||||||||||||||
Sbjct: 22387 ttcaatcagaatactgatga 22368

>gb|AC151667.1| Pan troglodytes chromosome X clone RP43-007H19 map human ortholog q28,
              complete sequence
          Length = 200796

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    atttcctggccaaggcaaca 207
              ||||||||||||||||||||
Sbjct: 116895 atttcctggccaaggcaaca 116876

>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence
          Length = 245088

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 468    cagtctgagcaagttcagagcaga 491
              |||||||| |||||||||||||||
Sbjct: 214327 cagtctgaccaagttcagagcaga 214350

>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 80      gtgcaaaagctcgacgacca 99
               ||||||||||||||||||||
Sbjct: 1518884 gtgcaaaagctcgacgacca 1518865

>gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosome 9, complete sequence
          Length = 109624

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 468    cagtctgagcaagttcagagcaga 491
              |||||||| |||||||||||||||
Sbjct: 100891 cagtctgaccaagttcagagcaga 100868

>emb|AL365332.9| Human DNA sequence from clone RP11-212L9 on chromosome 1 Contains part of
              the RYR2 gene for ryanodine receptor 2 (cardiac) and a CpG
              island, complete sequence
          Length = 166307

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    attatcagaatcagtctgag 476
              ||||||||||||||||||||
Sbjct: 108504 attatcagaatcagtctgag 108523

>gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, complete sequence
          Length = 109610

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 468    cagtctgagcaagttcagagcaga 491
              |||||||| |||||||||||||||
Sbjct: 100877 cagtctgaccaagttcagagcaga 100854

>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete
            sequence
          Length = 101563

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 100  ctgattgcatttgcagcaaagaac 123
            |||||||||||| |||||||||||
Sbjct: 6985 ctgattgcatttacagcaaagaac 6962

>gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178388

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tttcatcttttcctccacca 259
              ||||||||||||||||||||
Sbjct: 142538 tttcatcttttcctccacca 142557

>gb|AF338767.1|AF338767 Caenorhabditis elegans UNC-83 (unc-83) mRNA, complete cds
          Length = 3811

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ttcaatcagaatactgatga 175
            ||||||||||||||||||||
Sbjct: 3286 ttcaatcagaatactgatga 3267

>ref|XM_626488.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_2910),
            partial mRNA
          Length = 3012

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  ttgaatctattatcagaatc 468
            ||||||||||||||||||||
Sbjct: 2714 ttgaatctattatcagaatc 2733

>ref|NM_072245.4| Caenorhabditis elegans UNCoordinated family member (unc-83) (unc-83)
            mRNA, complete cds
          Length = 3806

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ttcaatcagaatactgatga 175
            ||||||||||||||||||||
Sbjct: 3299 ttcaatcagaatactgatga 3280

>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
            complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 294  atttaacaagcacaccatctgatt 317
            ||||||||| ||||||||||||||
Sbjct: 6711 atttaacaaacacaccatctgatt 6734

>gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana BAC F12A21 from chromosome I,
             complete sequence
          Length = 114190

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   atcagaatactgatgaatga 179
             ||||||||||||||||||||
Sbjct: 37665 atcagaatactgatgaatga 37684

>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 324604

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    atttcctggccaaggcaaca 207
              ||||||||||||||||||||
Sbjct: 227129 atttcctggccaaggcaaca 227110

>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
              sequence
          Length = 204271

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tttcatcttttcctccacca 259
              ||||||||||||||||||||
Sbjct: 166054 tttcatcttttcctccacca 166035

>dbj|AK176174.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL23-03-P13
          Length = 707

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 atcagaatactgatgaatga 179
           ||||||||||||||||||||
Sbjct: 578 atcagaatactgatgaatga 597

>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
             complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   atttaacaagcacaccatctgatt 317
             ||||||||| ||||||||||||||
Sbjct: 53102 atttaacaaacacaccatctgatt 53125

>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete
             sequences
          Length = 169152

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   gtgatcacgaagacaaggag 526
             ||||||||||||||||||||
Sbjct: 39816 gtgatcacgaagacaaggag 39797

>dbj|AB045995.1| Macaca fascicularis brain cDNA, clone:QccE-11742
          Length = 2355

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tttcatcttttcctccacca 259
            ||||||||||||||||||||
Sbjct: 2220 tttcatcttttcctccacca 2201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,258,224
Number of Sequences: 3902068
Number of extensions: 4258224
Number of successful extensions: 82177
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82081
Number of HSP's gapped (non-prelim): 94
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)