Clone Name	rbags21j24
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_483192.1| Oryza sativa (japonica cultivar-group), mRNA	264	3e-67
2	dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clon...	264	3e-67
3	gb|AY110296.1| Zea mays CL11152_1 mRNA sequence	194	3e-46
4	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	163	9e-37
5	dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D...	163	9e-37
6	gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome...	92	3e-15
7	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
8	gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker	50	0.009
9	gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complet...	44	0.57
10	gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence	42	2.3
11	emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on ch...	42	2.3
12	emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromo...	40	8.9
13	emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplo...	40	8.9
14	emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromo...	40	8.9
15	emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromo...	40	8.9
16	gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome...	40	8.9
17	emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chro...	40	8.9
18	emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chrom...	40	8.9
19	gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com...	40	8.9
20	emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chr...	40	8.9
21	emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on ch...	40	8.9
22	emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signall...	40	8.9
23	emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete...	40	8.9
24	gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence	40	8.9
25	gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se...	40	8.9
26	gb|DP000062.1| Sus scrofa target 117 genomic scaffold	40	8.9
27	dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ...	40	8.9
28	gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple...	40	8.9
29	gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom...	40	8.9
30	emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet...	40	8.9
31	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
32	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
33	dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signal...	40	8.9
34	gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence	40	8.9
35	gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complet...	40	8.9
36	gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence	40	8.9
37	dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
38	dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
39	gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence	40	8.9
40	gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complet...	40	8.9
41	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	40	8.9
42	emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...	40	8.9
43	emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro...	40	8.9
44	emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chro...	40	8.9

---

>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  264 bits (133), Expect = 3e-67
 Identities = 341/410 (83%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                        
Query: 106  gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 164
            |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 1954

                                                                        
Query: 165  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccn 224
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| || 
Sbjct: 1953 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 1894

                                                                        
Query: 225  ttnnactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 284
             |    || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1893 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 1834

                                                                        
Query: 285  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 344
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 1833 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 1774

                                                                        
Query: 345  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 404
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 1773 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 1714

                                                                        
Query: 405  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 464
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 1713 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1654

                                                              
Query: 465  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 514
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1653 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1604

---

>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  264 bits (133), Expect = 3e-67
 Identities = 341/410 (83%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                        
Query: 106  gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 164
            |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 2291

                                                                        
Query: 165  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccn 224
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| || 
Sbjct: 2290 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 2231

                                                                        
Query: 225  ttnnactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 284
             |    || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 2230 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 2171

                                                                        
Query: 285  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 344
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 2170 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 2111

                                                                        
Query: 345  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 404
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 2110 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 2051

                                                                        
Query: 405  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 464
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 2050 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1991

                                                              
Query: 465  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 514
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1990 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1941

---

>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  194 bits (98), Expect = 3e-46
 Identities = 320/395 (81%)
 Strand = Plus / Minus

                                                                       
Query: 119 aagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggt 178
           |||||| ||||| || ||||| ||||| |||||||| ||||| ||||  |||||||| ||
Sbjct: 880 aagggatgactttgccagccatagcaatccaggatcattccttttcaataccaggtaagt 821

                                                                       
Query: 179 ctccgcacgcccaatctcatccgagacgacatcctcgcagaagccnttnnactcgaggac 238
           ||| |||||||||| |||||| ||||  |||||||| ||||| ||  |  | || || ||
Sbjct: 820 ctcagcacgcccaacctcatctgagattacatcctcacagaaaccaatcaattcaagaac 761

                                                                       
Query: 239 ctccatcgcagctttgtaattcaccacgctcctttggaaatgcggattggtcttgcgcaa 298
           |||||| |||||||| || ||  | ||||||||||||||||| ||||||| ||| |||||
Sbjct: 760 ctccattgcagctttatagtttgctacgctcctttggaaatgtggattggacttacgcaa 701

                                                                       
Query: 299 tcttctataacgaatgtcgttcgggttctctatcacattcttgataattttgaagagtgt 358
           |||  ||||   |||||| || || | |||||| |||||||||||||| || ||||| ||
Sbjct: 700 tctcttatacttaatgtcatttggatgctctataacattcttgataatcttaaagagagt 641

                                                                       
Query: 359 ttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagcatttcaatagcctt 418
           |||||  |||||  ||||||||  ||||||||||||| |||| ||||| | ||| | |||
Sbjct: 640 ttgaatagcagactctgcctctacaggtgttgcttgcaaccgaagcatcttaatggactt 581

                                                                       
Query: 419 ctggaggcgcgaacagagggctgccactggctcttctattctttgcagctcatcgctctt 478
           |||||| || ||||||||||||  |||||| ||||| |  ||||||||||||| | | ||
Sbjct: 580 ctggagtcgtgaacagagggctctcactggttcttcaaccctttgcagctcattgatgtt 521

                                              
Query: 479 taaattagcagcatgatcgtcagggtcaggttcag 513
           | | | | || ||||||||||||| ||||||||||
Sbjct: 520 tgagtcaccaacatgatcgtcaggatcaggttcag 486

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 9e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                            
Query: 321      gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 380
                |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24723285

                                                                            
Query: 381      gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 440
                | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24723284 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24723225

                                                                            
Query: 441      gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 500
                |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24723224 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 24723165

                              
Query: 501      gggtcaggttcaga 514
                || ||||| |||||
Sbjct: 24723164 ggatcaggctcaga 24723151



 Score =  111 bits (56), Expect = 3e-21
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                            
Query: 106      gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 164
                |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24723693

                                                                        
Query: 165      agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaa 220
                |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 24723692 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaa 24723637

---

>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  163 bits (82), Expect = 9e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                         
Query: 321   gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 380
             |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24086

                                                                         
Query: 381   gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 440
             | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24085 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24026

                                                                         
Query: 441   gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 500
             |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24025 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 23966

                           
Query: 501   gggtcaggttcaga 514
             || ||||| |||||
Sbjct: 23965 ggatcaggctcaga 23952



 Score =  111 bits (56), Expect = 3e-21
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                         
Query: 106   gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 164
             |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24494

                                                                     
Query: 165   agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaa 220
             |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 24493 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaa 24438

---

>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 123   gaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggtctcc 182
             |||||||| ||||||||| |||| | |||||||||||| ||||  |||| ||| ||||| 
Sbjct: 27029 gaggactttgcaagccacggcaagctaggatcgttccttttcaataccaagtaagtctct 26970

                                                   
Query: 183   gcacgcccaatctcatccgagacgacatcctcgcagaa 220
             ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 26969 gcacgaccaatctcatccgagacaacatcctcacagaa 26932



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                         
Query: 321   gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 379
             |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 24629

                                                       
Query: 380   tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 421
             || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 24628 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 24588

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                            
Query: 123      gaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggtctcc 182
                |||||||| ||||||||| |||| | |||||||||||| ||||  |||| ||| ||||| 
Sbjct: 10810097 gaggactttgcaagccacggcaagctaggatcgttccttttcaataccaagtaagtctct 10810038

                                                      
Query: 183      gcacgcccaatctcatccgagacgacatcctcgcagaa 220
                ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 10810037 gcacgaccaatctcatccgagacaacatcctcacagaa 10810000



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                            
Query: 321      gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 379
                |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 10807697

                                                          
Query: 380      tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 421
                || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 10807696 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 10807656

---

>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 119 aagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggta 175
           |||||||||||| || ||||| ||||| |||||||| ||||| ||||  ||||||||
Sbjct: 226 aagggaggactttgccagccatagcaatccaggatcattccttttcaataccaggta 282

---

>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 473   gctctttaaattagcagcatga 494
             ||||||||||||||||||||||
Sbjct: 81446 gctctttaaattagcagcatga 81425

---

>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 344 aattttgaagagtgtttgaag 364
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142

---

>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3
             Contains a novel gene, possible ortholog of mouse
             insulin-like growth factor binding protein 7 (IGFBP7), a
             novel gene similar to aldehyde dehydrogenase 1 family,
             member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene
             and four CpG islands, complete sequence
          Length = 166207

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   ggctgcctctgaaggtgttgc 391
             |||||||||||||||||||||
Sbjct: 79819 ggctgcctctgaaggtgttgc 79799

---

>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996

---

>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012

---

>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713

---

>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141

---

>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    tcttgataattttgaagagtgttt 360
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969

---

>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037

---

>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516

---

>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   tcttgataattttgaagagtgttt 360
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309

---

>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gttcctcttcagcaccaggt 174
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760

---

>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    ttcttgataattttgaagag 355
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203

---

>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238

---

>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  agccacagcaacccaggatc 154
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117

---

>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  agccacagcaacccaggatc 154
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659

---

>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   attttgaagagtgtttgaag 364
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963

---

>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    agccacagcaacccaggatc 154
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758

---

>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906

---

>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tcttgataattttgaagagt 356
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550

---

>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tgaaatgtcatgatatacag 60
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981

---

>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 449      ctcttctattctttgcagct 468
                ||||||||||||||||||||
Sbjct: 10059259 ctcttctattctttgcagct 10059240

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 6        aagagcacactaaacctttt 25
                ||||||||||||||||||||
Sbjct: 20548065 aagagcacactaaacctttt 20548046



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 6        aagagcacactaaacctttt 25
                ||||||||||||||||||||
Sbjct: 20546139 aagagcacactaaacctttt 20546120

---

>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260

---

>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926

---

>gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complete sequence
          Length = 33335

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   aattgagtggtttctgctct 540
             ||||||||||||||||||||
Sbjct: 18715 aattgagtggtttctgctct 18696

---

>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245

---

>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagagcacactaaacctttt 25
             ||||||||||||||||||||
Sbjct: 65712 aagagcacactaaacctttt 65693



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagagcacactaaacctttt 25
             ||||||||||||||||||||
Sbjct: 63786 aagagcacactaaacctttt 63767

---

>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagagcacactaaacctttt 25
             ||||||||||||||||||||
Sbjct: 13723 aagagcacactaaacctttt 13704



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagagcacactaaacctttt 25
             ||||||||||||||||||||
Sbjct: 11797 aagagcacactaaacctttt 11778

---

>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759

---

>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   tgaaatgtcatgatatacag 60
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 449      ctcttctattctttgcagct 468
                ||||||||||||||||||||
Sbjct: 10059144 ctcttctattctttgcagct 10059125

---

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    ctcttctattctttgcagct 468
              ||||||||||||||||||||
Sbjct: 103362 ctcttctattctttgcagct 103381

---

>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593

---

>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccacagcaacccaggatc 154
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,199,892
Number of Sequences: 3902068
Number of extensions: 5199892
Number of successful extensions: 91728
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91422
Number of HSP's gapped (non-prelim): 300
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---