ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141) ... 32 1.6
2RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082) 31 2.7
3LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-la... 30 7.9
4DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA poly... 30 7.9
5LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent ... 30 7.9

>JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141)|
           (S-adenosyl-L-methionine:jasmonic acid carboxyl
           methyltransferase) (Floral nectary-specific protein 1)
          Length = 392

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +1

Query: 127 KIFRWESQNKG*AEKCYAKNSCFQS------RRCSPKALVYQFVHEADLLKTGFIALSSS 288
           ++ R    NKG  E  YAKNS  QS      RR   +AL    +  +++L  G   L  S
Sbjct: 2   EVMRILHMNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGCS 61

Query: 289 KAIIPRCEGSSSNILAT 339
               P    S SNI+ T
Sbjct: 62  SG--PNSLLSISNIVET 76



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>RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082)|
          Length = 141

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 512 LTAASIKTGRPQIARR---AIDLAERRLL--KDGWPEYYDGKLGKYVGKQARKFQTWSIA 348
           +  AS+K G+P++ R+   A+ + +R+    KDG   Y++   G  V  Q R  +   IA
Sbjct: 59  IVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIA 118

Query: 347 G 345
           G
Sbjct: 119 G 119



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>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin receptor|
            1) (Lectomedin-2) (Fragment)
          Length = 1406

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 288  GRGQGNEASFEKVRLMDKLIHKSFRGATSGLK 193
            GR   + A+FEK+ ++ +L+H + RGA+ G K
Sbjct: 1205 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1235



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>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)|
          Length = 1762

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 33  KRKENTHFHNCFFSNSINELRYCTAEEFRRK*NFPLGKSKQGMSR 167
           K +E+T   NC F N   E + C+    R++ +  + K K G S+
Sbjct: 133 KSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQ 177



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>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (CIRL-1)
          Length = 1515

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 288  GRGQGNEASFEKVRLMDKLIHKSFRGATSGLK 193
            GR   + A+FEK+ ++ +L+H + RGA+ G K
Sbjct: 1314 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,035,886
Number of Sequences: 219361
Number of extensions: 2166494
Number of successful extensions: 6288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6287
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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