>ref|XM_473987.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 517  gtcctaggggtgcttacgctgccaaaactgttctgcctgctca 559
            |||||||| || | || ||||||||||||||||||||||||||
Sbjct: 3359 gtcctaggagtacctatgctgccaaaactgttctgcctgctca 3317



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 299  agatcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagct 358
            |||||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |
Sbjct: 3580 agatcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaatt 3521

                      
Query: 359  gcctgatgtc 368
            ||||||||||
Sbjct: 3520 gcctgatgtc 3511

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 517      gtcctaggggtgcttacgctgccaaaactgttctgcctgctca 559
                |||||||| || | || ||||||||||||||||||||||||||
Sbjct: 32016776 gtcctaggagtacctatgctgccaaaactgttctgcctgctca 32016818



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                            
Query: 299      agatcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagct 358
                |||||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |
Sbjct: 32016555 agatcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaatt 32016614

                          
Query: 359      gcctgatgtc 368
                ||||||||||
Sbjct: 32016615 gcctgatgtc 32016624

>dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055A13, full
            insert sequence
          Length = 4117

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 517  gtcctaggggtgcttacgctgccaaaactgttctgcctgctca 559
            |||||||| || | || ||||||||||||||||||||||||||
Sbjct: 3610 gtcctaggagtacctatgctgccaaaactgttctgcctgctca 3568



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 299  agatcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagct 358
            |||||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |
Sbjct: 3830 agatcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaatt 3771

                      
Query: 359  gcctgatgtc 368
            ||||||||||
Sbjct: 3770 gcctgatgtc 3761

>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06,
             complete sequence
          Length = 141752

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 517   gtcctaggggtgcttacgctgccaaaactgttctgcctgctca 559
             |||||||| || | || ||||||||||||||||||||||||||
Sbjct: 37483 gtcctaggagtacctatgctgccaaaactgttctgcctgctca 37525



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 299   agatcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagct 358
             |||||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |
Sbjct: 37262 agatcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaatt 37321

                       
Query: 359   gcctgatgtc 368
             ||||||||||
Sbjct: 37322 gcctgatgtc 37331

>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence
          Length = 167656

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   tttacagctcagatcagagtt 309
             |||||||||||||||||||||
Sbjct: 52794 tttacagctcagatcagagtt 52774

>emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BAC contig B13H18
          Length = 122576

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   cactccccagttttgttttgt 245
             |||||||||||||||||||||
Sbjct: 95326 cactccccagttttgttttgt 95306

>ref|XM_623682.1| PREDICTED: Apis mellifera similar to GA11263-PA (LOC408421), mRNA
          Length = 2275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 176 tgtacacaaacgaaagaataatttc 200
           |||||||||| ||||||||||||||
Sbjct: 81  tgtacacaaaagaaagaataatttc 57

>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 101     aaattttctgctgctgctttc 121
               |||||||||||||||||||||
Sbjct: 2680779 aaattttctgctgctgctttc 2680799

>gb|AC139369.9| Mus musculus chromosome 1, clone RP24-567B20, complete sequence
          Length = 159817

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    atcatacatacaaataacag 37
             ||||||||||||||||||||
Sbjct: 82895 atcatacatacaaataacag 82914

>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete
              sequence
          Length = 177821

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tccaaagaaatagagcaaca 286
              ||||||||||||||||||||
Sbjct: 160409 tccaaagaaatagagcaaca 160428

>gb|AC112261.4| Mus musculus BAC clone RP23-204O17 from 3, complete sequence
          Length = 186290

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   ttttctgctgctgctttctg 123
             ||||||||||||||||||||
Sbjct: 22317 ttttctgctgctgctttctg 22298

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 434     cgctctgtagcgaagcgattgttg 457
               |||||||| |||||||||||||||
Sbjct: 1999901 cgctctgtcgcgaagcgattgttg 1999878

>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2
             Contains the 3' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase, complete sequence
          Length = 173760

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   cactccaaagaaatagagca 283
             ||||||||||||||||||||
Sbjct: 90438 cactccaaagaaatagagca 90457

>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ctggccttggattccgagat 431
              ||||||||||||||||||||
Sbjct: 208254 ctggccttggattccgagat 208235



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ctggccttggattccgagat 431
              ||||||||||||||||||||
Sbjct: 207813 ctggccttggattccgagat 207794

>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence
          Length = 192043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   ctggccttggattccgagat 431
             ||||||||||||||||||||
Sbjct: 56858 ctggccttggattccgagat 56877



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   ctggccttggattccgagat 431
             ||||||||||||||||||||
Sbjct: 56417 ctggccttggattccgagat 56436

>emb|BX572075.8| Zebrafish DNA sequence from clone CH211-158N13 in linkage group 12,
              complete sequence
          Length = 163859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aattttctgctgctgctttc 121
              ||||||||||||||||||||
Sbjct: 119258 aattttctgctgctgctttc 119239

>gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromosome 15, complete
              sequence
          Length = 156271

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tccaaagaaatagagcaaca 286
              ||||||||||||||||||||
Sbjct: 113387 tccaaagaaatagagcaaca 113406

>gb|AE012322.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 230
            of 460 of the complete genome
          Length = 10444

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   cgactacttcgaccacgccg 72
            ||||||||||||||||||||
Sbjct: 7355 cgactacttcgaccacgccg 7336

>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence
          Length = 170763

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   actccccagttttgttttgt 245
             ||||||||||||||||||||
Sbjct: 83532 actccccagttttgttttgt 83551

>gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OABb-158A1, complete
              sequence
          Length = 163918

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    aaatagagcaacacatttac 293
              ||||||||||||||||||||
Sbjct: 115103 aaatagagcaacacatttac 115122

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      cgactacttcgaccacgccg 72
               ||||||||||||||||||||
Sbjct: 2367252 cgactacttcgaccacgccg 2367271

>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence
          Length = 253762

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    ttctgcctgctcagcctgct 566
              ||||||||||||||||||||
Sbjct: 131808 ttctgcctgctcagcctgct 131827

>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete
             sequence
          Length = 175001

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tccaaagaaatagagcaaca 286
             ||||||||||||||||||||
Sbjct: 84807 tccaaagaaatagagcaaca 84826

>gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M13, complete sequence
          Length = 186927

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    actccccagttttgttttgt 245
              ||||||||||||||||||||
Sbjct: 165136 actccccagttttgttttgt 165155

>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     tgctgctttctgcccacccg 131
               ||||||||||||||||||||
Sbjct: 1042720 tgctgctttctgcccacccg 1042701

>emb|CR536616.7| Zebrafish DNA sequence from clone CH211-264E16 in linkage group 18,
             complete sequence
          Length = 154119

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ttttatgcatccttccagct 97
             ||||||||||||||||||||
Sbjct: 47527 ttttatgcatccttccagct 47508

>gb|AC138285.8| Mus musculus chromosome 1, clone RP24-383G22, complete sequence
          Length = 216104

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     atcatacatacaaataacag 37
              ||||||||||||||||||||
Sbjct: 195129 atcatacatacaaataacag 195148

>gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 from chromosome unknown,
             complete sequence
          Length = 152763

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 247   ccaccgcccagcctgtacactcca 270
             |||| |||||||||||||||||||
Sbjct: 65992 ccacagcccagcctgtacactcca 66015

>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     gcggcattagccactcccca 233
               ||||||||||||||||||||
Sbjct: 3897369 gcggcattagccactcccca 3897388

>emb|BX005289.15| Zebrafish DNA sequence from clone DKEY-68I6 in linkage group 18, complete
              sequence
          Length = 155905

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ttttatgcatccttccagct 97
              ||||||||||||||||||||
Sbjct: 151409 ttttatgcatccttccagct 151428

>gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosome 3, complete sequence
          Length = 222889

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    ttttctgctgctgctttctg 123
              ||||||||||||||||||||
Sbjct: 192805 ttttctgctgctgctttctg 192786

>gb|L13224.1|AULMHC2BE1 Aulonocara hansbaenschi (clone Auha-M-195a) MHC class II beta chain
           gene, exon 2
          Length = 905

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 acacatttacagctcagatc 303
           ||||||||||||||||||||
Sbjct: 798 acacatttacagctcagatc 817

>gb|L06275.1|AGMSN5HMS African green monkey centromeric SN5 satellite DNA sequence homolog
          Length = 410

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 505 gttgtcctgggggtcctaggggtg 528
           |||||||||| |||||||||||||
Sbjct: 14  gttgtcctggtggtcctaggggtg 37


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,044,836
Number of Sequences: 3902068
Number of extensions: 6044836
Number of successful extensions: 105448
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105276
Number of HSP's gapped (non-prelim): 172
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)