ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21j03 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 520 VTLVDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 341 VTL +++ + +++EGL +E K K+ + + QE AK RL LW+YG Sbjct: 839 VTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYG 895 Query: 340 DVESD 326 D +D Sbjct: 896 DFRAD 900
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 520 VTLVDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 341 VTL +++ + +++EGL +E K K+ + + QE AK RL LW+YG Sbjct: 840 VTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYG 896 Query: 340 DVESD 326 D +D Sbjct: 897 DFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 520 VTLVDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 341 VTL +++ + +++EGL +E K K+ + + QE AK RL LW+YG Sbjct: 840 VTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYG 896 Query: 340 DVESD 326 D +D Sbjct: 897 DFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -3 Query: 520 VTLVDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 341 VTL +++ + +++EGL +E K K+ + + QE AK RL LW+YG Sbjct: 840 VTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYG 896 Query: 340 DVESD 326 D +D Sbjct: 897 DFRAD 901
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = -3 Query: 505 PETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVES 329 PE + + EE R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + Sbjct: 114 PEDQDFDQNTLEEEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDE 173 Query: 328 D 326 + Sbjct: 174 E 174
>NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) [Contains: Nuclease B; Nuclease A] Length = 231 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T ++L + + +AKKE+L +W + +S Sbjct: 181 VNEALVRQGLAKVA----YVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADS 229
>EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precursor (Epidermal| growth factor-like protein 8) (Multiple EGF-like domain protein 8) Length = 293 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -3 Query: 499 TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKA 374 T +SI + + E + ER RW+ E + LE LEQ+ ++A Sbjct: 192 TSASILSVAVREADSEEERALRWEVAELRGRLEKLEQWAKQA 233
>SBDS_HUMAN (Q9Y3A5) Shwachman-Bodian-Diamond syndrome protein| Length = 249 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = -3 Query: 511 VDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 353 V+PET+ ++E + + + + ++ ALE ++Q +EK K ER + Sbjct: 119 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHM 171
>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein| SMC2) Length = 1170 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/52 (30%), Positives = 31/52 (59%) Frame = -3 Query: 496 ESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 341 +SS+ +L++ L +E + TK+ + +++++Q QE K R RL +YG Sbjct: 419 KSSMKMELLKKELLTIEPKLKEATKDNELNVKHVKQCQETCDKLRARLVEYG 470
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 265 CLLSSTDAAGVSSRLELALPRRIQ 336 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)| Length = 407 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLW 350 I+ A+ EG+ ERGK W D +E KT+ + +E+ +E ++ER+ +W Sbjct: 111 IDLAVTVEGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW 163
>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)| Length = 715 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%) Frame = -3 Query: 520 VTLVDPETESSINAAMLEE------GLAR---LERGKRWDTKERKTALENLEQFQEKAK 371 VTLV E S+ + EE G A+ + +GK + +ERKTA++ E+F +K K Sbjct: 263 VTLVAEENPFSMGMLLSEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMK 321
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 290 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 165 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB10780 (EC 2.1.1.-)| Length = 405 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKE-------RKTALENLEQFQEKAKKERLRLW 350 I+ A+ ++G+ ERGK W + KT+ E +E+ +E ++E++ +W Sbjct: 111 IDLAITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVW 163
>SBDS_MOUSE (P70122) Shwachman-Bodian-Diamond syndrome protein homolog (Protein| 22A3) Length = 249 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = -3 Query: 511 VDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 353 V+PET+ ++E + + + + ++ ALE ++Q +EK K ER + Sbjct: 119 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHM 171
>KLF7_MOUSE (Q99JB0) Krueppel-like factor 7| Length = 301 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 587 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 501 +D HYR K G++ + C+HCD C SR Sbjct: 262 SDELTRHYR-KHTGAKPFKCNHCDRCFSR 289
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 469 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 326 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 469 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 326 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 469 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 326 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 469 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 326 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = -3 Query: 472 LEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 332 ++E ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 428 VKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>KLF7_HUMAN (O75840) Krueppel-like factor 7 (Ubiquitous krueppel-like factor)| Length = 302 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 587 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 501 +D HYR K G++ + C+HCD C SR Sbjct: 263 SDELTRHYR-KHTGAKPFKCNHCDRCFSR 290
>NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 487 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 329 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>KLF6_RAT (O35819) Krueppel-like factor 6 (Core promoter element-binding| protein) (Transcription factor Zf9) Length = 283 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 587 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 501 +D H+R K G++ + CSHCD C SR Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271
>KLF6_MOUSE (O08584) Krueppel-like factor 6 (Core promoter element-binding| protein) Length = 283 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 587 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 501 +D H+R K G++ + CSHCD C SR Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271
>KLF6_HUMAN (Q99612) Krueppel-like factor 6 (Core promoter element-binding| protein) (B-cell-derived protein 1) (Proto-oncogene BCD1) (Transcription factor Zf9) (GC-rich sites-binding factor GBF) Length = 283 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 587 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 501 +D H+R K G++ + CSHCD C SR Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,281,791 Number of Sequences: 219361 Number of extensions: 1228838 Number of successful extensions: 4048 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4042 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
