ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal0c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPY_DROME (O44783) Protein sprouty (Spry) 28 7.3
2Y610_ENCCU (Q8SVF2) Hypothetical protein ECU06_0100 27 9.5
3RLF_HUMAN (Q13129) Zinc finger protein Rlf (Rearranged L-myc fus... 27 9.5

>SPY_DROME (O44783) Protein sprouty (Spry)|
          Length = 589

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 89  CRCRQSQNLESIPSSQ*LRQTCLC 18
           CRC Q Q+   +P +    +TCLC
Sbjct: 384 CRCEQCQSPRPLPQTWVCNKTCLC 407



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>Y610_ENCCU (Q8SVF2) Hypothetical protein ECU06_0100|
          Length = 261

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
 Frame = +1

Query: 151 ILVLV*SYTKLETFILRRSEY*SCTENKLHR-------EIAILYTPPDKLQATVYPILV- 306
           I++L  SY+ LE F+L R+   S   ++LH+        + I ++    L   ++P+   
Sbjct: 61  IMLLPFSYSALECFLLFRNNLESSYRSELHKMPYSIFNVLLIAFSVISILSIAIFPLSTW 120

Query: 307 ----IPXFSPLLPAXII 345
               +  +S LLP  I+
Sbjct: 121 SNNDVSSYSMLLPCLIV 137



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>RLF_HUMAN (Q13129) Zinc finger protein Rlf (Rearranged L-myc fusion gene|
           protein) (Zn-15-related protein)
          Length = 1914

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 83  CRQSQNLESIPSSQ*LRQTCLCGHLPN 3
           C +S+ + ++ S Q    TCLC  LPN
Sbjct: 238 CAESKEISNVSSFQQAYITCLCSMLPN 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,426,851
Number of Sequences: 219361
Number of extensions: 844667
Number of successful extensions: 1679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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