ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21i19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
2gb|AY103949.1| Zea mays PCO103424 mRNA sequence 74 5e-10
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 9e-09
4gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 70 9e-09
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
6emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on ch... 42 1.9
7gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.9
8gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 42 1.9
9ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.9
10ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 ... 40 7.7
11gb|AF042836.1| Homo sapiens cystathionine beta-synthase (CBS) ge... 40 7.7
12gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
13gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome... 40 7.7
14gb|AC147788.1| Latimeria menadoensis clone VMRC4-19C10, complete... 40 7.7
15gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 7.7
16gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.7
17emb|AL160036.12| Human DNA sequence from clone RP11-555C15 on ch... 40 7.7
18gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete s... 40 7.7
19emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 40 7.7
20emb|AL604002.8| Mouse DNA sequence from clone RP23-386F6 on chro... 40 7.7
21dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 7.7
22dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 7.7
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
25gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
26dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
27dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
28dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
29gb|AC124069.7| Homo sapiens chromosome 8, clone RP11-326L2, comp... 40 7.7
30gb|AC027117.6| Homo sapiens chromosome 8, clone RP11-806O11, com... 40 7.7
31dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22... 40 7.7
32dbj|BS000232.1| Pan troglodytes chromosome 22 clone:PTB-071B01, ... 40 7.7
33emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on ch... 40 7.7
34dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.7
35dbj|AP006249.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 7.7
36dbj|AP002085.1| Homo sapiens genomic DNA, chromosome 21, BAC clo... 40 7.7
37dbj|AP001630.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.7
38dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.7
39dbj|AB020865.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco... 40 7.7
40dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
41dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7 
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full
            insert sequence
          Length = 2797

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  ctggtgctgccacgggcatcgctgcaggttgtgcgtagctctgctgcgggtaggcctggg 505
            ||||||| ||||| | ||| |||| ||||||||| ||| | || || | ||||||||| |
Sbjct: 2481 ctggtgccgccaccgccattgctgaaggttgtgcataggtttgttgtgtgtaggcctgag 2422

                                                                        
Query: 506  cagggtatgtgggaggataggcaccataagcggctgcttgaggagcanattggggcattt 565
            | |||||||| ||||||||||| || ||||| ||||||||||||||| |||| |||||||
Sbjct: 2421 cggggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcattt 2362



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 392  caggttgctgagggtaagctgctgcaggtgcc 423
            |||||||||||||||||||||| || ||||||
Sbjct: 2523 caggttgctgagggtaagctgccgccggtgcc 2492
to top
>gb|AY103949.1| Zea mays PCO103424 mRNA sequence
          Length = 1035

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 466 gctgcaggttgtgcgtagctctgctgcgggtaggcctgggcagggtatgtgggaggatag 525
           |||||||| |||| |||||| || || |  |||||||| |||| |||||| |||||||| 
Sbjct: 634 gctgcaggctgtgggtagctttgttgtgtataggcctgtgcagagtatgttggaggataa 575

                                                   
Query: 526 gcaccataagcggctgcttgaggagcanattggggcattt 565
           |||||||| || |||||||||||||||   ||||||||||
Sbjct: 574 gcaccataggcagctgcttgaggagcaggctggggcattt 535
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                         
Query: 508     gggtatgtgggaggataggcaccataagcggctgcttgaggagcanattggggcattt 565
               |||||||| ||||||||||| || ||||| ||||||||||||||| |||| |||||||
Sbjct: 5729606 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcattt 5729663



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 392     caggttgctgagggtaagctgctgcaggtgcc 423
               |||||||||||||||||||||| || ||||||
Sbjct: 5729403 caggttgctgagggtaagctgccgccggtgcc 5729434



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     ctgctgctgccaaaaaacct 224
               ||||||||||||||||||||
Sbjct: 5352565 ctgctgctgccaaaaaacct 5352546
to top
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 508    gggtatgtgggaggataggcaccataagcggctgcttgaggagcanattggggcattt 565
              |||||||| ||||||||||| || ||||| ||||||||||||||| |||| |||||||
Sbjct: 101565 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcattt 101508



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 392    caggttgctgagggtaagctgctgcaggtgcc 423
              |||||||||||||||||||||| || ||||||
Sbjct: 101768 caggttgctgagggtaagctgccgccggtgcc 101737
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                         
Query: 508     gggtatgtgggaggataggcaccataagcggctgcttgaggagcanattggggcattt 565
               |||||||| ||||||||||| || ||||| ||||||||||||||| |||| |||||||
Sbjct: 5728819 gggtatgttggaggataggcgccgtaagcagctgcttgaggagcagattgaggcattt 5728876



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 392     caggttgctgagggtaagctgctgcaggtgcc 423
               |||||||||||||||||||||| || ||||||
Sbjct: 5728616 caggttgctgagggtaagctgccgccggtgcc 5728647



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     ctgctgctgccaaaaaacct 224
               ||||||||||||||||||||
Sbjct: 5351780 ctgctgctgccaaaaaacct 5351761
to top
>emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on chromosome 10 Contains a
             novel gene, gene FLJ32104, a novel gene, the RBP3 gene for
             retinol binding protein 3, the GDF2 gene for growth
             differentiation factor 2, the GDF10 gene for growth
             differentiation factor 10 and three CpG islands, complete
             sequence
          Length = 204512

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   tacaactgcagctgctgcaaa 122
             |||||||||||||||||||||
Sbjct: 52819 tacaactgcagctgctgcaaa 52799
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 207     gctgctgccaaaaaacctgcc 227
               |||||||||||||||||||||
Sbjct: 3798832 gctgctgccaaaaaacctgcc 3798812
to top
>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 426   cgcctgtgctggggtgggcac 446
             |||||||||||||||||||||
Sbjct: 70123 cgcctgtgctggggtgggcac 70143
to top
>ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus similar to prolyl
           endopeptidase-like (LOC586521), partial mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 203 gcctgctgctgccaaaaaacc 223
           |||||||||||||||||||||
Sbjct: 3   gcctgctgctgccaaaaaacc 23
to top
>ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 protein (LOC457242),
           mRNA
          Length = 1126

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 388 acagcaggttgctgagggtaagctgctg 415
           ||||||| |||| |||||||||||||||
Sbjct: 288 acagcagattgcagagggtaagctgctg 315
to top
>gb|AF042836.1| Homo sapiens cystathionine beta-synthase (CBS) gene, major and minor
             alternative splice products, complete cds
          Length = 28046

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   gctggggtgggcactggtgc 452
             ||||||||||||||||||||
Sbjct: 20358 gctggggtgggcactggtgc 20339
to top
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0008E07, complete sequence
          Length = 146679

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    caggttgctgagggtaagct 411
              ||||||||||||||||||||
Sbjct: 105922 caggttgctgagggtaagct 105941
to top
>gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome 1, complete sequence
          Length = 201732

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   caactgcagctgctgcaaat 123
             ||||||||||||||||||||
Sbjct: 25890 caactgcagctgctgcaaat 25909
to top
>gb|AC147788.1| Latimeria menadoensis clone VMRC4-19C10, complete sequence
          Length = 168364

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     aaacacaaaagtatttttcc 41
              ||||||||||||||||||||
Sbjct: 124019 aaacacaaaagtatttttcc 124038
to top
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    caactgcagctgctgcaaat 123
              ||||||||||||||||||||
Sbjct: 146999 caactgcagctgctgcaaat 147018
to top
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ctgctgctgccaaaaaacct 224
             ||||||||||||||||||||
Sbjct: 58733 ctgctgctgccaaaaaacct 58714
to top
>emb|AL160036.12| Human DNA sequence from clone RP11-555C15 on chromosome 13 Contains part
              of the GPC6 gene for glypican 6, complete sequence
          Length = 173526

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 13     attcctagnaaacacaaaagtattttt 39
              |||||||| ||| ||||||||||||||
Sbjct: 150602 attcctagaaaagacaaaagtattttt 150628
to top
>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence
          Length = 224337

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     acaaaagtatttttcctagtaaca 49
              |||||||||||||||||| |||||
Sbjct: 179962 acaaaagtatttttcctattaaca 179939
to top
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 319   tgacaacaccaatctagaaatcag 342
             |||||||||| |||||||||||||
Sbjct: 31973 tgacaacaccgatctagaaatcag 31996
to top
>emb|AL604002.8| Mouse DNA sequence from clone RP23-386F6 on chromosome 11, complete
              sequence
          Length = 142134

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    tgctggggtgggcactggtg 451
              ||||||||||||||||||||
Sbjct: 139153 tgctggggtgggcactggtg 139134
to top
>dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630064C07 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  caactgcagctgctgcaaat 123
            ||||||||||||||||||||
Sbjct: 1352 caactgcagctgctgcaaat 1333
to top
>dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630006G22 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  caactgcagctgctgcaaat 123
            ||||||||||||||||||||
Sbjct: 1354 caactgcagctgctgcaaat 1335
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 392      caggttgctgagggtaagct 411
                ||||||||||||||||||||
Sbjct: 12338444 caggttgctgagggtaagct 12338463
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 392      caggttgctgagggtaagct 411
                ||||||||||||||||||||
Sbjct: 31963216 caggttgctgagggtaagct 31963235



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 392      caggttgctgagggtaagct 411
                ||||||||||||||||||||
Sbjct: 10209952 caggttgctgagggtaagct 10209933
to top
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ctgctgctgccaaaaaacct 224
             ||||||||||||||||||||
Sbjct: 82880 ctgctgctgccaaaaaacct 82861
to top
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 392  caggttgctgagggtaagct 411
            ||||||||||||||||||||
Sbjct: 5030 caggttgctgagggtaagct 5049
to top
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    caggttgctgagggtaagct 411
              ||||||||||||||||||||
Sbjct: 149294 caggttgctgagggtaagct 149313
to top
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   caggttgctgagggtaagct 411
             ||||||||||||||||||||
Sbjct: 75266 caggttgctgagggtaagct 75247
to top
>gb|AC124069.7| Homo sapiens chromosome 8, clone RP11-326L2, complete sequence
          Length = 174025

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     aaacacaaaagtatttttcctagt 45
              |||||||||| |||||||||||||
Sbjct: 167964 aaacacaaaaatatttttcctagt 167941
to top
>gb|AC027117.6| Homo sapiens chromosome 8, clone RP11-806O11, complete sequence
          Length = 160223

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    aaacacaaaagtatttttcctagt 45
             |||||||||| |||||||||||||
Sbjct: 72217 aaacacaaaaatatttttcctagt 72240
to top
>dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22, map 22, complete
             sequences
          Length = 163962

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   gctggggtgggcactggtgc 452
             ||||||||||||||||||||
Sbjct: 27957 gctggggtgggcactggtgc 27976
to top
>dbj|BS000232.1| Pan troglodytes chromosome 22 clone:PTB-071B01, map 22, complete
              sequences
          Length = 190322

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gctggggtgggcactggtgc 452
              ||||||||||||||||||||
Sbjct: 161516 gctggggtgggcactggtgc 161535
to top
>emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on chromosome 9, complete
             sequence
          Length = 50450

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gtaggtacacatgcccatgc 316
             ||||||||||||||||||||
Sbjct: 21698 gtaggtacacatgcccatgc 21679
to top
>dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, section 92/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gctggggtgggcactggtgc 452
              ||||||||||||||||||||
Sbjct: 216634 gctggggtgggcactggtgc 216653
to top
>dbj|AP006249.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-383B10, complete
              sequence
          Length = 195290

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     aaacacaaaagtatttttcctagt 45
              |||||||||| |||||||||||||
Sbjct: 134014 aaacacaaaaatatttttcctagt 133991
to top
>dbj|AP002085.1| Homo sapiens genomic DNA, chromosome 21, BAC clone:KB274G10,
             MX1-D21S171 region, complete sequence
          Length = 97015

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   gctggggtgggcactggtgc 452
             ||||||||||||||||||||
Sbjct: 42164 gctggggtgggcactggtgc 42183
to top
>dbj|AP001630.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1151C12, MX1-D21S171
              region, complete sequence
          Length = 151846

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gctggggtgggcactggtgc 452
              ||||||||||||||||||||
Sbjct: 122211 gctggggtgggcactggtgc 122230
to top
>dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2007G4, MX1-D21S171
             region, complete sequence
          Length = 148179

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   gctggggtgggcactggtgc 452
             ||||||||||||||||||||
Sbjct: 20922 gctggggtgggcactggtgc 20941
to top
>dbj|AB020865.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular
             colorectal and non-small cell lung cancer , segment 8/11
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    aaacacaaaagtatttttcctagt 45
             |||||||||| |||||||||||||
Sbjct: 34876 aaacacaaaaatatttttcctagt 34853
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   caggttgctgagggtaagct 411
             ||||||||||||||||||||
Sbjct: 59943 caggttgctgagggtaagct 59962
to top
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0004B13
          Length = 142268

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    caggttgctgagggtaagct 411
              ||||||||||||||||||||
Sbjct: 134551 caggttgctgagggtaagct 134532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,694,259
Number of Sequences: 3902068
Number of extensions: 4694259
Number of successful extensions: 88610
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88386
Number of HSP's gapped (non-prelim): 224
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top