ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal0c08 |
|---|---|
| Clone Library Name | barley_pub |
>RAE2_HUMAN (P26374) Rab proteins geranylgeranyltransferase component A 2 (Rab| escort protein 2) (REP-2) (Choroideraemia-like protein) Length = 656 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%) Frame = -1 Query: 670 ATAVRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLE 491 A AVR +L S+ C ++V+L+ C+++ T ++ + ++ LF+ + E Sbjct: 486 ACAVRVTELCSSTMTCMKDTYLVHLT--CSSSKTAREDLESVVKKLFTP--------YTE 535 Query: 490 TTSRNIEDTKPALIWSYVYVQEITQGTS--------GTVLSCPMPDENLDYRDILESTKQ 335 T E TKP L+W+ + + G S V C PD L ++ + Sbjct: 536 TEINEEELTKPRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAET 595 Query: 334 LFTDTYPNEEFLPRNAAPKYADDDSD 257 LF + +P EEF P P+ D D Sbjct: 596 LFQEIFPTEEFCPPPPNPEDIIFDGD 621
>RAE1_MOUSE (Q9QXG2) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein homolog) Length = 665 Score = 50.8 bits (120), Expect = 4e-06 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Frame = -1 Query: 664 AVRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLETT 485 AVR ++L S+ C G ++V+L+ C ++ T ++ + + ++ LF+ + E Sbjct: 498 AVRVIELCSSTMTCMKGTYLVHLT--CMSSKTAREDLERVVQKLFTP--------YTEIE 547 Query: 484 SRNIEDTKPALIWSYVYVQEITQGTS--------GTVLSCPMPDENLDYRDILESTKQLF 329 + N + KP ++W+ + + S V C PD NL + ++ + +F Sbjct: 548 AENEQVEKPRILWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDCNLGNDNAVQQAEIVF 607 Query: 328 TDTYPNEEFLPRNAAPKYADDDSDLAE*KHVCRGLVFFWTNS 203 PNE+F P P+ D D ++ + V V TNS Sbjct: 608 QKICPNEDFCPAPPNPEDIILDGDSSQ-QEVSESSVIPETNS 648
>RAE2_MOUSE (Q9QZD5) Rab proteins geranylgeranyltransferase component A 2 (Rab| escort protein 2) (REP-2) (Choroideraemia-like protein) Length = 621 Score = 50.8 bits (120), Expect = 4e-06 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -1 Query: 667 TAVRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLET 488 T+VR ++L S+ C ++V+L+ C+++ T ++ + ++ LF +A E Sbjct: 486 TSVRVMELCSSTMTCMKDSYLVHLT--CSSSKTAREDLEPVVKQLFIPEA--------EA 535 Query: 487 TSRNIEDTKPALIWSYVYVQEITQGTS--------GTVLSCPMPDENLDYRDILESTKQL 332 + E KP L+W+ + + G S V C PD L ++ + L Sbjct: 536 EAGKDELRKPRLLWALYFNMRDSSGVSRSSYCGLPSNVYICSGPDWGLGSEHAVKQAETL 595 Query: 331 FTDTYPNEEFLPRNAAPK 278 F + +P+EEF P P+ Sbjct: 596 FQEIFPSEEFCPPPPNPE 613
>RAE1_RAT (P37727) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein homolog) Length = 650 Score = 50.4 bits (119), Expect = 5e-06 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 8/146 (5%) Frame = -1 Query: 661 VRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLETTS 482 VR ++L S+ C G ++V+L+ C ++ T ++ + + ++ LF+ + E + Sbjct: 484 VRVIELCSSTMTCMKGTYLVHLT--CMSSKTAREDLERVVQKLFTP--------YTEIEA 533 Query: 481 RNIEDTKPALIWSYVYVQEITQGTS--------GTVLSCPMPDENLDYRDILESTKQLFT 326 N + KP L+W+ + + S V C PD L + ++ + LF Sbjct: 534 ENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDSGLGNDNAVKQAETLFQ 593 Query: 325 DTYPNEEFLPRNAAPKYADDDSDLAE 248 PNE+F P P+ D D ++ Sbjct: 594 QICPNEDFCPAPPNPEDIVLDGDSSQ 619
>RAE1_HUMAN (P24386) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein) (TCD protein) Length = 653 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 8/144 (5%) Frame = -1 Query: 664 AVRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLETT 485 AVR ++L S+ C G ++V+L+ CT++ T ++ + ++ LF + E Sbjct: 486 AVRVIELCSSTMTCMKGTYLVHLT--CTSSKTAREDLESVVQKLFVP--------YTEME 535 Query: 484 SRNIEDTKPALIWSYVYVQEITQGTS--------GTVLSCPMPDENLDYRDILESTKQLF 329 N + KP ++W+ + + S V C PD L + ++ + LF Sbjct: 536 IENEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLF 595 Query: 328 TDTYPNEEFLPRNAAPKYADDDSD 257 + PNE+F P P+ D D Sbjct: 596 QEICPNEDFCPPPPNPEDIILDGD 619
>RABEP_DROME (Q9V8W3) Rab proteins geranylgeranyltransferase component A (Rab| escort protein homolog) (REP) Length = 511 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/125 (20%), Positives = 51/125 (40%) Frame = -1 Query: 652 LQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHLETTSRNI 473 +QLS CP G+++ +L+TP + +F++Q D S+ + +S Sbjct: 365 IQLSHYTGACPEGLYIFHLTTPALSEDPASDL------AIFTSQLFDQSDAQIIFSS--- 415 Query: 472 EDTKPALIWSYVYVQEITQGTSGTVLSCPMPDENLDYRDILESTKQLFTDTYPNEEFLPR 293 + + Q + + P LDY + + + +F +P+ +FLPR Sbjct: 416 --------YFTIAAQSSKSPAAEHIYYTDPPTYELDYDAAIANARDIFGKMFPDADFLPR 467 Query: 292 NAAPK 278 P+ Sbjct: 468 APDPE 472
>CID_DROME (P19538) Protein cubitus interruptus| Length = 1397 Score = 34.7 bits (78), Expect = 0.27 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Frame = -1 Query: 673 QATAVRALQLSSNVAVCPPGMFMVYLSTPCTNAFTGKQYINKAMEVLFSTQASDDSEGHL 494 Q + Q+S + + G F P T T K + + +++ TQAS+ S HL Sbjct: 1263 QCGIISQSQMSPSTNLNNDGQFSTVNMQPIT---TSKLFPPEPQKIVCDTQASNTSVMHL 1319 Query: 493 ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCP-MPDENLDYRDILEST 341 +T R +E + W E ++ + S P MP N + D+ ST Sbjct: 1320 DTYQRTLEYVQSCQNW-----METNNTSTNQIQSLPGMPVNNTLFPDVSSST 1366
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 32.7 bits (73), Expect = 1.0 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Frame = -1 Query: 568 GKQYINKAMEVLFSTQASDDS--EGHLETTSRNIEDTKPALI---WSYVYVQEITQGTSG 404 G +N A + QA D+ GH+ S ++ D +PA W Y+ Q +T TSG Sbjct: 282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341 Query: 403 TVLSCPMPDENLDY----RDILESTKQLFTDTYPNEEFLPRNA--APKY 275 T + D L Y +D+LE + + +P E ++ ++ AP+Y Sbjct: 342 TTI-----DAQLRYAAGTKDMLE--RYFKGEDFPTENYIVKDGELAPQY 383
>PO210_RAT (P11654) Nuclear pore membrane glycoprotein 210 precursor (POM210)| (Nuclear pore protein gp210) Length = 1886 Score = 31.6 bits (70), Expect = 2.3 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = -1 Query: 466 TKPALIWSYVYVQEITQGTSGTVLSCPMPDENLDYRDILESTKQLFTDTYPNEEFLPRNA 287 T+PA + S ++ ++IT +G VL C + + I+ +T++L+ + P E L A Sbjct: 87 TQPARLTSIIFAEDIT---TGQVLRCDAIVDLIHGIQIVSTTRELYLEDSPLE--LKIQA 141 Query: 286 APKYADDDSDLAE*KHVCRGLVFFWT 209 + S LA GLVF WT Sbjct: 142 LDSEGNTFSTLA-------GLVFDWT 160
>PO210_MOUSE (Q9QY81) Nuclear pore membrane glycoprotein 210 precursor (POM210)| (Nuclear pore protein gp210) Length = 1886 Score = 31.6 bits (70), Expect = 2.3 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = -1 Query: 466 TKPALIWSYVYVQEITQGTSGTVLSCPMPDENLDYRDILESTKQLFTDTYPNEEFLPRNA 287 T+PA + S ++ ++IT +G VL C + + I+ +T++L+ + P E L A Sbjct: 87 TQPARLTSIIFAEDIT---TGQVLRCDAIVDLIHGIQIVSTTRELYLEDSPLE--LKIQA 141 Query: 286 APKYADDDSDLAE*KHVCRGLVFFWT 209 + S LA GLVF WT Sbjct: 142 LDSEGNTFSTLA-------GLVFDWT 160
>HSDR_STAAW (Q8NYL9) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>HSDR_STAAS (Q6GCT1) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>HSDR_STAAR (Q6GKB1) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>HSDR_STAAC (Q5HJH8) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -1 Query: 553 NKAMEVLFSTQASDDSEGHL-ETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPD 377 NK E FST +++ H+ + + ++D+K ++ + V G VL+ D Sbjct: 559 NKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDIL---IVVNMFLTGFDSKVLNTLYVD 615 Query: 376 ENLDYRDILES---TKQLFTDTYPNEEFLPRNAAPKYADD 266 +NL Y D++++ T ++ ++ P + + K DD Sbjct: 616 KNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDD 655
>SYE_STRCO (O86528) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 494 Score = 30.8 bits (68), Expect = 3.9 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Frame = -1 Query: 433 VQEITQGTSGTVLSCPMPDENLDYRDILESTKQLFTDTYPNEEFLPRNAAPKYA---DDD 263 V+E T ++ MPDE + + D++ + P+ + N AP Y D Sbjct: 147 VEEYTSQGREPIVRFRMPDEAITFTDLVRGEITYLPENVPDYGIVRANGAPLYTLVNPVD 206 Query: 262 SDLAE*KHVCRG 227 L E HV RG Sbjct: 207 DALMEITHVLRG 218
>RNT1_YEAST (Q02555) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 471 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -1 Query: 574 FTGKQYINKAMEVLFSTQASDDSEGHLETTSRNIEDTKPALIWSYVY 434 F G +N M ++ + D SEG L T N+ + WS +Y Sbjct: 242 FLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMY 288
>YAY3_SCHPO (Q10211) Hypothetical protein C4H3.03c in chromosome I| Length = 649 Score = 29.6 bits (65), Expect = 8.7 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = -1 Query: 496 LETTSRNIEDTKPALIWSYVYVQEITQGTSGTVLSCPMPDENLDY-RDILESTKQLFTDT 320 L+ R ED +P W V I +GTS L C LDY R E+ T+ Sbjct: 100 LDFFHRPWEDYEPLYPWLIRRVSCI-RGTSRIKLEC---FPALDYARQSHETRVSKITEN 155 Query: 319 YPNEEFLPRNAAPKYADD 266 Y EF+P + PKY D Sbjct: 156 YYQAEFVPASGDPKYILD 173
>HCP_METMA (Q8PS69) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster| protein) (HCP) Length = 540 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -1 Query: 370 LDYRDILESTKQLFTDTYPNEEFLPRNAAPKYADDDS 260 LD +LE TK D Y + E LP N+ P + D+ Sbjct: 239 LDLEQLLEQTKGTGIDVYTHGEMLPANSYPAFKKYDN 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,219,860 Number of Sequences: 219361 Number of extensions: 1976495 Number of successful extensions: 4795 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
