ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550614.1| Oryza sativa (japonica cultivar-group), mRNA 206 3e-50
2dbj|AK120319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 3e-50
3dbj|AK106717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 3e-50
4dbj|AK062184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 3e-50
5dbj|D12632.1|RIC40SSRPC Oryza sativa (japonica cultivar-group) m... 206 3e-50
6emb|AJ417525.1|OSA417525 Oryza sativa partial mRNA for putative ... 155 1e-34
7dbj|AB124888.1| Oryza glumipatula EPSPs, rps20 genes for 5-enolp... 145 1e-31
8dbj|AB124887.1| Oryza barthii EPSPs, rps20 genes for 5-enolpyruv... 145 1e-31
9dbj|AB124886.1| Oryza glaberrima EPSPs, rps20 genes for 5-enolpy... 145 1e-31
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
11dbj|AB124892.1| Oryza punctata EPSPs, rps20 genes for 5-enolpyru... 137 2e-29
12dbj|AB124889.1| Oryza meridionalis EPSPs, rps20 genes for 5-enol... 137 2e-29
13dbj|AB124884.1| Oryza rufipogon EPSPs, rps20 genes for 5-enolpyr... 137 2e-29
14dbj|AB124883.1| Oryza sativa (indica cultivar-group) EPSPs, rps2... 137 2e-29
15dbj|AB124882.1| Oryza sativa (japonica cultivar-group) EPSPs, rp... 137 2e-29
16dbj|AB124881.1| Oryza sativa (japonica cultivar-group) EPSPs, rp... 137 2e-29
17dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
18dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
19dbj|AB052962.1| Oryza sativa EPSPs, rps20 genes for 3-phosphoshi... 137 2e-29
20dbj|AB124893.1| Oryza officinalis EPSPs, rps20 genes for 5-enolp... 133 4e-28
21dbj|AB124891.1| Oryza longistaminata EPSPs, rps20 genes for 5-en... 129 6e-27
22dbj|AB124890.1| Oryza longistaminata EPSPs, rps20 genes for 5-en... 129 6e-27
23dbj|AB124885.1| Oryza rufipogon EPSPs, rps20 genes for 5-enolpyr... 129 6e-27
24gb|AY310806.1| Nicotiana benthamiana clone 12-105 unknown mRNA 101 1e-18
25dbj|AK062522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
26gb|AY104760.1| Zea mays PCO060764 mRNA sequence 90 5e-15
27dbj|D10402.1|RICT47 Oryza sativa mRNA for ribosomal protein S22 ... 88 2e-14
28gb|AY758353.1| Zea mays ribosomal protein S10p/S20e mRNA, comple... 82 1e-12
29ref|NM_195069.1| Oryza sativa (japonica cultivar-group) putative... 80 5e-12
30dbj|AK121628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 1e-09
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
33gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
34gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome... 70 5e-09
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 5e-09
37gb|AY106535.1| Zea mays PCO060763 mRNA sequence 64 3e-07
38dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
39dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
40emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, ... 58 2e-05
41gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 56 7e-05
42ref|XM_569465.1| Cryptococcus neoformans var. neoformans JEC21 r... 56 7e-05
43gb|AY432914.1| Aedes aegypti ASAP ID: 34329 cytosolic small ribo... 54 3e-04
44gb|DQ440015.1| Aedes aegypti clone AE-217 40S ribosomal protein ... 54 3e-04
45emb|AJ563463.1|CGI563463 Crassostrea gigas mRNA for ribosomal pr... 54 3e-04
46gb|AY826138.1| Aedes albopictus clone AL_140 40S ribosomal prote... 50 0.004
47gb|AY232014.1| Drosophila yakuba clone yak-ad_RpS20 mRNA sequence 50 0.004
48gb|AY231743.1| Drosophila yakuba clone yak-em_RpS20 mRNA sequence 50 0.004
49gb|M95062.1|MZEORFC Zea mays putative ribosomal protein S22 homo... 48 0.018
50dbj|AB180449.1| Plutella xylostella mRNA for Ribosomal protein S... 48 0.018
51dbj|AK062490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
52gb|AY440951.1| Armigeres subalbatus ASAP ID: 39533 cytosolic sma... 46 0.070
53gb|AC144805.9| Medicago truncatula clone mth2-72a11, complete se... 46 0.070
54ref|NM_114372.3| Arabidopsis thaliana structural constituent of ... 44 0.28
55ref|XM_968376.1| PREDICTED: Tribolium castaneum similar to CG156... 44 0.28
56gb|AY114024.1| Arabidopsis thaliana putative 40S ribsomomal prot... 44 0.28
57gb|AY096646.1| Arabidopsis thaliana putative 40S ribsomomal prot... 44 0.28
58emb|AL353992.1|ATF14D17 Arabidopsis thaliana DNA chromosome 3, B... 44 0.28
59gb|AY857478.1| Suberites domuncula S20 mRNA, complete cds 44 0.28
60gb|AF400217.1| Spodoptera frugiperda ribosomal protein S20 mRNA,... 44 0.28
61ref|NM_125624.2| Arabidopsis thaliana structural constituent of ... 42 1.1
62gb|AC007772.6| Drosophila melanogaster clone BACR19P12, complete... 42 1.1
63gb|BT000382.1| Arabidopsis thaliana 40S ribosomal protein S20 (A... 42 1.1
64ref|XM_776941.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
65emb|Y11119.1|DMRPS20 D.melanogaster mRNA for ribosomal protein S20 42 1.1
66ref|NM_079697.2| Drosophila melanogaster Ribosomal protein S20 C... 42 1.1
67gb|AY071742.1| Drosophila melanogaster RH47995 full length cDNA 42 1.1
68gb|AY071353.1| Drosophila melanogaster RE38972 full length cDNA 42 1.1
69gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.1
70gb|AF325017.2|AF325017 Arabidopsis thaliana AT5g62300 (AT5g62300... 42 1.1
71gb|AF370460.1|AF370460 Arabidopsis thaliana 40S ribosomal protei... 42 1.1
72gb|AY085673.1| Arabidopsis thaliana clone 16926 mRNA, complete s... 42 1.1
73gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 42 1.1
74dbj|AB019235.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.1
75gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70... 42 1.1
76gb|BT001877.1| Drosophila melanogaster SD11109 full insert cDNA 42 1.1
77dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.1
78gb|AC122888.5| Mus musculus BAC clone RP23-93F11 from chromosome... 40 4.3
79gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, co... 40 4.3
80gb|L22355.1|MUSVCAM08 Mus musculus vascular adhesion cell molecu... 40 4.3 
>ref|XM_550614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 680

 Score =  206 bits (104), Expect = 3e-50
 Identities = 142/157 (90%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 440 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 381

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggngtngntaccttctccacanggg 289
           ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| || 
Sbjct: 380 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtaccttctccacaagga 321

                                                
Query: 290 gacttcctggtggtgatgntgagcaccttggtgggca 326
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 320 gacttcctggtggtgatgtggagcaccttggtgggca 284
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>dbj|AK120319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N13, full
           insert sequence
          Length = 680

 Score =  206 bits (104), Expect = 3e-50
 Identities = 142/157 (90%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 440 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 381

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggngtngntaccttctccacanggg 289
           ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| || 
Sbjct: 380 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtaccttctccacaagga 321

                                                
Query: 290 gacttcctggtggtgatgntgagcaccttggtgggca 326
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 320 gacttcctggtggtgatgtggagcaccttggtgggca 284
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>dbj|AK106717.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G01, full
           insert sequence
          Length = 2114

 Score =  206 bits (104), Expect = 3e-50
 Identities = 142/157 (90%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 876 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 817

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggngtngntaccttctccacanggg 289
           ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| || 
Sbjct: 816 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtaccttctccacaagga 757

                                                
Query: 290 gacttcctggtggtgatgntgagcaccttggtgggca 326
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 756 gacttcctggtggtgatgtggagcaccttggtgggca 720
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>dbj|AK062184.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E02, full
           insert sequence
          Length = 695

 Score =  206 bits (104), Expect = 3e-50
 Identities = 142/157 (90%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 447 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 388

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggngtngntaccttctccacanggg 289
           ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| || 
Sbjct: 387 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtaccttctccacaagga 328

                                                
Query: 290 gacttcctggtggtgatgntgagcaccttggtgggca 326
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 327 gacttcctggtggtgatgtggagcaccttggtgggca 291
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>dbj|D12632.1|RIC40SSRPC Oryza sativa (japonica cultivar-group) mRNA for 40S subunit
           ribosomal protein, complete cds
          Length = 661

 Score =  206 bits (104), Expect = 3e-50
 Identities = 142/157 (90%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 413 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 354

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggngtngntaccttctccacanggg 289
           ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| || 
Sbjct: 353 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtaccttctccacaagga 294

                                                
Query: 290 gacttcctggtggtgatgntgagcaccttggtgggca 326
           ||||||||||||||||||  |||||||||||||||||
Sbjct: 293 gacttcctggtggtgatgtggagcaccttggtgggca 257
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>emb|AJ417525.1|OSA417525 Oryza sativa partial mRNA for putative ribosomal protein S20 (xd13
           gene)
          Length = 433

 Score =  155 bits (78), Expect = 1e-34
 Identities = 141/159 (88%), Gaps = 4/159 (2%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
           ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 161 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 102

                                                                       
Query: 230 accctcttgtgcacccgcatctcaaaccgatcccaggng-tngntaccttctccacangg 288
           ||||| ||||||||||||||||||||||||| ||||| | | | |||||||| |||| ||
Sbjct: 101 acccttttgtgcacccgcatctcaaaccgat-ccaggtgttgggtaccttct-cacaagg 44

                                                  
Query: 289 ggacttcctggtggtgatgnt-gagcaccttggtgggca 326
            |||||||||||||||||| | |||||||||||||||||
Sbjct: 43  agacttcctggtggtgatggtggagcaccttggtgggca 5
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>dbj|AB124888.1| Oryza glumipatula EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1185
          Length = 3003

 Score =  145 bits (73), Expect = 1e-31
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                        
Query: 158  acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
            |||||||| || ||||| |||||||| ||||||||||||| ||||||||| |  ||||||
Sbjct: 1502 acctcaacacctggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctg 1561

                                                                        
Query: 218  acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1562 acaagatcaatcacccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1621



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2785 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2837
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>dbj|AB124887.1| Oryza barthii EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W159b-2
          Length = 2960

 Score =  145 bits (73), Expect = 1e-31
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                        
Query: 158  acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
            |||||||| || ||||| |||||||| ||||||||||||| ||||||||| |  ||||||
Sbjct: 1463 acctcaacacctggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctg 1522

                                                                        
Query: 218  acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1523 acaagatcaatcacccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1582



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||| ||||
Sbjct: 2749 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtaggca 2801
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>dbj|AB124886.1| Oryza glaberrima EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W025
          Length = 2961

 Score =  145 bits (73), Expect = 1e-31
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                        
Query: 158  acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
            |||||||| || ||||| |||||||| ||||||||||||| ||||||||| |  ||||||
Sbjct: 1463 acctcaacacctggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctg 1522

                                                                        
Query: 218  acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1523 acaagatcaatcacccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1582



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||| ||||
Sbjct: 2750 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtaggca 2802
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                           
Query: 170     ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
               ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1819353 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1819412

                                                               
Query: 230     accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
               ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1819413 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1819460



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                    
Query: 274     accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
               |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 1820576 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 1820628
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>dbj|AB124892.1| Oryza punctata EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1514
          Length = 3220

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||||||||||||||||| ||||||||| |  |||||||| || ||||||
Sbjct: 1610 ggctcaatggtgatcgaggtgatctgcttgacaacatctgcagagctgacgagatcaatc 1669

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1670 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1717



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||| ||||| || ||||||||||||||||||   ||||||||||||||||
Sbjct: 2989 accttcgccacaaggagacttcctggtggtgatgtgaagcaccttggtgggca 3041
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>dbj|AB124889.1| Oryza meridionalis EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences
          Length = 2902

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1457 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1516

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1517 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1564



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2685 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2737
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>dbj|AB124884.1| Oryza rufipogon EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W107
          Length = 2901

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1460 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1519

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1520 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1567



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2684 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2736
to top
>dbj|AB124883.1| Oryza sativa (indica cultivar-group) EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:PTB10
          Length = 2903

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1460 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1519

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1520 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1567



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2686 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2738
to top
>dbj|AB124882.1| Oryza sativa (japonica cultivar-group) EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:T65wx
          Length = 2899

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1457 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1516

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1517 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1564



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2682 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2734
to top
>dbj|AB124881.1| Oryza sativa (japonica cultivar-group) EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:Shimokita
          Length = 2899

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1457 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1516

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 1517 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 1564



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2682 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2734
to top
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0001H02
          Length = 147160

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                         
Query: 170   ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
             ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 19831 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 19890

                                                             
Query: 230   accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
             ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 19891 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 19938



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                  
Query: 274   accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
             |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 21054 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 21106
to top
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0679C08
          Length = 156266

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                          
Query: 170    ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
              ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 144502 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 144561

                                                              
Query: 230    accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
              ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 144562 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 144609



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 274    accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
              |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 145725 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 145777
to top
>dbj|AB052962.1| Oryza sativa EPSPs, rps20 genes for 3-phosphoshikimate
            1-carboxyvinyltransferase, 40S ribosomal protein S20,
            complete cds
          Length = 10601

 Score =  137 bits (69), Expect = 2e-29
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 7452 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 7511

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct: 7512 acccttttgtgcacccgcatctcaaaccgatcccaggtgttggtacct 7559



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 8675 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 8727
to top
>dbj|AB124893.1| Oryza officinalis EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1272
          Length = 3069

 Score =  133 bits (67), Expect = 4e-28
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||||||||||||||||| ||||||||| |  |||||||| || ||||||
Sbjct: 1445 ggctcaatggtgatcgaggtgatctgcttgacaacatctgcagagctgacgagatcaatc 1504

                                                 
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccagg 266
            ||||| |||||||||||||||||||||||||||||||
Sbjct: 1505 acccttttgtgcacccgcatctcaaaccgatcccagg 1541



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||| ||||| || ||||||||||||||||||   ||||||||||||||||
Sbjct: 2830 accttcgccacaaggagacttcctggtggtgatgtgaagcaccttggtgggca 2882
to top
>dbj|AB124891.1| Oryza longistaminata EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1422
          Length = 3045

 Score =  129 bits (65), Expect = 6e-27
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1535 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1594

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| |||||||||||||||||||| |||||||||| || | |||||
Sbjct: 1595 acccttttgtgcacccgcatctcaaagcgatcccaggtgttggtacct 1642



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2828 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2880
to top
>dbj|AB124890.1| Oryza longistaminata EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1034
          Length = 2888

 Score =  129 bits (65), Expect = 6e-27
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1428 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1487

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| |||||||||||||||||||| |||||||||| || | |||||
Sbjct: 1488 acccttttgtgcacccgcatctcaaagcgatcccaggtgttggtacct 1535



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2671 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2723
to top
>dbj|AB124885.1| Oryza rufipogon EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W1945
          Length = 2906

 Score =  129 bits (65), Expect = 6e-27
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                        
Query: 170  ggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatc 229
            ||||| |||||||| ||||||||||||| ||||||||| |  ||||||||||| ||||||
Sbjct: 1464 ggctcaatggtgattgaggtgatctgcttgacaacatctgcagagctgacaagatcaatc 1523

                                                            
Query: 230  accctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
            ||||| |||||||||||||||||||| |||||||||| || | |||||
Sbjct: 1524 acccttttgtgcacccgcatctcaaagcgatcccaggtgttggtacct 1571



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                 
Query: 274  accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
            |||||||||||| || ||||||||||||||||||  |||||||||||||||||
Sbjct: 2689 accttctccacaaggagacttcctggtggtgatgtggagcaccttggtgggca 2741
to top
>gb|AY310806.1| Nicotiana benthamiana clone 12-105 unknown mRNA
          Length = 504

 Score =  101 bits (51), Expect = 1e-18
 Identities = 137/169 (81%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| ||||| || |||||||| ||||||||||||| ||||||||| | ||| |||
Sbjct: 284 acctcaacaccgggttcaatggtgattgaggtgatctgcttgacaacatctgcggaactg 225

                                                                       
Query: 218 acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
           | |||||||||||| | ||||||||||| ||  |||||||  ||||| |  |   | |||
Sbjct: 224 aaaaggtcaatcacacgcttgtgcacccncagntcaaacctgtcccatgtatttgtgcct 165

                                                            
Query: 278 tctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
           |||||||| || |||||  | ||||| ||| |||| ||||| |||||||
Sbjct: 164 tctccacagggagactttntagtggtaatgttgagaaccttagtgggca 116
to top
>dbj|AK062522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D06, full
           insert sequence
          Length = 707

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 115/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 185 gaggtgatctgctngacaacatccgnggagctgacaaggtcaatcaccctcttgtgcacc 244
           ||||| |||||||  || ||||| | |||||||| ||||||||||||||||||||| |  
Sbjct: 393 gaggttatctgcttcaccacatcaggggagctgataaggtcaatcaccctcttgtggatg 334

                                                                       
Query: 245 cgcatctcaaaccgatcccaggngtngntaccttctccacanggggacttcctggtggtg 304
           || | ||||||||||||||||| ||   | ||||| ||||| || ||||| | ||| |||
Sbjct: 333 cggaactcaaaccgatcccaggtgtttgttccttcaccacagggagacttgcgggtagtg 274

                               
Query: 305 atgntgagcaccttggtggg 324
           |||  |||||||||||||||
Sbjct: 273 atgtggagcaccttggtggg 254
to top
>gb|AY104760.1| Zea mays PCO060764 mRNA sequence
          Length = 726

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| |||||||| || ||||| |||||||||||||  || ||||| | |||||||
Sbjct: 430 acctcaacaccgggctcaattgtgatggaggtgatctgcttcaccacatcaggggagctg 371

                                                          
Query: 218 acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatccca 264
           |  |||||||||||||||||||| |  || | |||||||||||||||
Sbjct: 370 attaggtcaatcaccctcttgtgaatgcggaactcaaaccgatccca 324
to top
>dbj|D10402.1|RICT47 Oryza sativa mRNA for ribosomal protein S22 (T47 gene), partial
           sequence
          Length = 321

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 257 cgatcccaggngtngntaccttctccacanggggacttcctggtggtgatgntgagcacc 316
           |||||||||| || | ||||||||||||| || ||||||||||||||||||  |||||||
Sbjct: 321 cgatcccaggtgttggtaccttctccacaaggagacttcctggtggtgatgtggagcacc 262

                  
Query: 317 ttggtgg 323
           |||||||
Sbjct: 261 ttggtgg 255
to top
>gb|AY758353.1| Zea mays ribosomal protein S10p/S20e mRNA, complete cds
          Length = 457

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| |||||||| || ||||| |||||||||||||  || ||||| | | |||||
Sbjct: 423 acctcaacaccgggctcaattgtgatggaggtgatctgcttcaccacatcagggaagctg 364

                                                          
Query: 218 acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatccca 264
           |  |||||||||||||||||||| |  || | |||||||||||||||
Sbjct: 363 attaggtcaatcaccctcttgtgaatgcggaactcaaaccgatccca 317
to top
>ref|NM_195069.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein
           S10p/S20e (OSJNBa0071I20.6), mRNA
          Length = 393

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                       
Query: 156 cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
           ||||||| || || |||||||||||||| |||||||||||||  |||||||| | |||||
Sbjct: 370 cgacctcgacaccaggctcgatggtgatggaggtgatctgcttcacaacatctggggagc 311

                                                                       
Query: 216 tgacaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntac 275
           |||  || || ||||||| |||||| |  || | ||| || |||||||| | ||   | |
Sbjct: 310 tgatgagatcgatcacccgcttgtggatgcggaactcgaaacgatcccatgtgtttgttc 251

                                                            
Query: 276 cttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
           |||| || || || ||||| | ||||||||||  |||||||||||||||
Sbjct: 250 cttcaccgcacggcgacttgcgggtggtgatgtggagcaccttggtggg 202
to top
>dbj|AK121628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C15, full
           insert sequence
          Length = 710

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                       
Query: 156 cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
           ||||||| || || |||||||||||||| |||||||||||||  |||||||| | |||||
Sbjct: 476 cgacctcgacaccaggctcgatggtgatggaggtgatctgcttcacaacatctggggagc 417

                                                                       
Query: 216 tgacaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntac 275
           |||  || || ||||||| |||||| |  || | ||| || |||||||| | ||   | |
Sbjct: 416 tgatgagatcgatcacccgcttgtggatgcggaactcgaaacgatcccatgtgtttgttc 357

                                                            
Query: 276 cttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
           |||| || || || ||||| | ||||||||||  |||||||||||||||
Sbjct: 356 cttcaccgcacggcgacttgcgggtggtgatgtggagcaccttggtggg 308
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                           
Query: 185     gaggtgatctgctngacaacatccgnggagctgacaaggtcaatcaccctcttgtgcacc 244
               ||||| |||||||  || ||||| | |||||||| ||||||||||||||||||||| |  
Sbjct: 7857407 gaggttatctgcttcaccacatcaggggagctgataaggtcaatcaccctcttgtggatg 7857348

                                     
Query: 245     cgcatctcaaaccgatcccagg 266
               || | |||||||||||||||||
Sbjct: 7857347 cggaactcaaaccgatcccagg 7857326



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 273     taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
               ||||||| ||||| || ||||| | ||| ||||||  |||||||||||||||
Sbjct: 7856789 taccttcaccacagggagacttgcgggtagtgatgtggagcaccttggtggg 7856738
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                           
Query: 185     gaggtgatctgctngacaacatccgnggagctgacaaggtcaatcaccctcttgtgcacc 244
               ||||| |||||||  || ||||| | |||||||| ||||||||||||||||||||| |  
Sbjct: 7855242 gaggttatctgcttcaccacatcaggggagctgataaggtcaatcaccctcttgtggatg 7855183

                                     
Query: 245     cgcatctcaaaccgatcccagg 266
               || | |||||||||||||||||
Sbjct: 7855182 cggaactcaaaccgatcccagg 7855161



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 273     taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
               ||||||| ||||| || ||||| | ||| ||||||  |||||||||||||||
Sbjct: 7854624 taccttcaccacagggagacttgcgggtagtgatgtggagcaccttggtggg 7854573
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>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030J04, complete sequence
          Length = 153431

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                         
Query: 185   gaggtgatctgctngacaacatccgnggagctgacaaggtcaatcaccctcttgtgcacc 244
             ||||| |||||||  || ||||| | |||||||| ||||||||||||||||||||| |  
Sbjct: 43005 gaggttatctgcttcaccacatcaggggagctgataaggtcaatcaccctcttgtggatg 42946

                                   
Query: 245   cgcatctcaaaccgatcccagg 266
             || | |||||||||||||||||
Sbjct: 42945 cggaactcaaaccgatcccagg 42924



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 273   taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
             ||||||| ||||| || ||||| | ||| ||||||  |||||||||||||||
Sbjct: 42387 taccttcaccacagggagacttgcgggtagtgatgtggagcaccttggtggg 42336
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>gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0071I20, complete sequence
          Length = 145510

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                         
Query: 156   cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
             ||||||| || || |||||||||||||| |||||||||||||  |||||||| | |||||
Sbjct: 32854 cgacctcgacaccaggctcgatggtgatggaggtgatctgcttcacaacatctggggagc 32795

                                      
Query: 216   tgacaaggtcaatcaccctcttgtg 240
             |||  || || ||||||| ||||||
Sbjct: 32794 tgatgagatcgatcacccgcttgtg 32770



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 273   taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
             ||||||| || || || ||||| | ||||||||||  |||||||||||||||
Sbjct: 30590 taccttcaccgcacggcgacttgcgggtggtgatgtggagcaccttggtggg 30539
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                           
Query: 156     cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
               ||||||| || || |||||||||||||| |||||||||||||  |||||||| | |||||
Sbjct: 4485491 cgacctcgacaccaggctcgatggtgatggaggtgatctgcttcacaacatctggggagc 4485432

                                        
Query: 216     tgacaaggtcaatcaccctcttgtg 240
               |||  || || ||||||| ||||||
Sbjct: 4485431 tgatgagatcgatcacccgcttgtg 4485407



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 273     taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
               ||||||| || || || ||||| | ||||||||||  |||||||||||||||
Sbjct: 4483227 taccttcaccgcacggcgacttgcgggtggtgatgtggagcaccttggtggg 4483176
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                           
Query: 156     cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
               ||||||| || || |||||||||||||| |||||||||||||  |||||||| | |||||
Sbjct: 4486312 cgacctcgacaccaggctcgatggtgatggaggtgatctgcttcacaacatctggggagc 4486253

                                        
Query: 216     tgacaaggtcaatcaccctcttgtg 240
               |||  || || ||||||| ||||||
Sbjct: 4486252 tgatgagatcgatcacccgcttgtg 4486228



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 273     taccttctccacanggggacttcctggtggtgatgntgagcaccttggtggg 324
               ||||||| || || || ||||| | ||||||||||  |||||||||||||||
Sbjct: 4484048 taccttcaccgcacggcgacttgcgggtggtgatgtggagcaccttggtggg 4483997
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>gb|AY106535.1| Zea mays PCO060763 mRNA sequence
          Length = 741

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 156 cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagc 215
           |||||||||| || ||||| |||||||| |||||||||||||  || || || | |||||
Sbjct: 423 cgacctcaacacccggctcaatggtgatagaggtgatctgcttcaccacgtctggggagc 364

                                 
Query: 216 tgacaaggtcaatcaccctctt 237
           |||  ||||| |||||||||||
Sbjct: 363 tgatcaggtcgatcaccctctt 342
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 213     agctgacaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccag 265
               |||||||||| ||||||||||| | ||||||  |||||||||||| |||||||
Sbjct: 4245715 agctgacaagatcaatcaccctatcgtgcacaagcatctcaaaccaatcccag 4245663
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 213   agctgacaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccag 265
             |||||||||| ||||||||||| | ||||||  |||||||||||| |||||||
Sbjct: 69474 agctgacaagatcaatcaccctatcgtgcacaagcatctcaaaccaatcccag 69422
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>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete
             sequence
          Length = 83989

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 213   agctgacaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccag 265
             |||||||||| ||||||||||| | ||||||  |||||||||||| |||||||
Sbjct: 80627 agctgacaagatcaatcaccctatcgtgcacaagcatctcaaaccaatcccag 80679
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 158    acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaac 204
              |||||||| |||||||||| || ||| ||||||||||||| ||||||
Sbjct: 390593 acctcaactccgggctcgagggagatggaggtgatctgcttgacaac 390639
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>ref|XM_569465.1| Cryptococcus neoformans var. neoformans JEC21 ribosomal protein S20
           (CNC01410) partial mRNA
          Length = 457

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaac 204
           |||||||| |||||||||| || ||| ||||||||||||| ||||||
Sbjct: 397 acctcaactccgggctcgagggagatggaggtgatctgcttgacaac 351
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>gb|AY432914.1| Aedes aegypti ASAP ID: 34329 cytosolic small ribosomal subunit S20
           mRNA sequence
          Length = 340

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 156 cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngac 201
           ||||||| || ||||| |||||| |||||||||||||||||| |||
Sbjct: 207 cgacctctacaccgggttcgatgttgatcgaggtgatctgcttgac 162
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>gb|DQ440015.1| Aedes aegypti clone AE-217 40S ribosomal protein S20 mRNA, complete
           cds
          Length = 363

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 156 cgacctcaacgccgggctcgatggtgatcgaggtgatctgctngac 201
           ||||||| || ||||| |||||| |||||||||||||||||| |||
Sbjct: 340 cgacctctacaccgggttcgatgttgatcgaggtgatctgcttgac 295
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>emb|AJ563463.1|CGI563463 Crassostrea gigas mRNA for ribosomal protein S20 (rps20 gene)
          Length = 381

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 274 accttctccacanggggacttcctggtggtgatgntgagcaccttggtgggca 326
           |||||||||||| || | ||||||||||||||||   || |||||||||||||
Sbjct: 240 accttctccacagggcgtcttcctggtggtgatgcgcagaaccttggtgggca 188
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>gb|AY826138.1| Aedes albopictus clone AL_140 40S ribosomal protein S20 mRNA,
           complete cds
          Length = 363

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngac 201
           ||||| || ||||| |||||| |||||||||||||||||| |||
Sbjct: 338 acctctacaccgggttcgatgttgatcgaggtgatctgcttgac 295
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>gb|AY232014.1| Drosophila yakuba clone yak-ad_RpS20 mRNA sequence
          Length = 360

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||||||||
Sbjct: 341 acctctacgccgggctcgatgttgatggaggtgatct 305
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>gb|AY231743.1| Drosophila yakuba clone yak-em_RpS20 mRNA sequence
          Length = 360

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||||||||
Sbjct: 341 acctctacgccgggctcgatgttgatggaggtgatct 305
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>gb|M95062.1|MZEORFC Zea mays putative ribosomal protein S22 homolog mRNA, partial cds
          Length = 184

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 221 aggtcaatcaccctcttgtgcacccgcatctcaaaccgatccca 264
           |||||||||||||||||||| |  || | |||||||||||||||
Sbjct: 178 aggtcaatcaccctcttgtgaatgcggaactcaaaccgatccca 135
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>dbj|AB180449.1| Plutella xylostella mRNA for Ribosomal protein S20, complete cds
          Length = 489

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgct 197
           ||||| || |||||||||||| |||| |||||||||||||
Sbjct: 436 acctctactccgggctcgatgttgatggaggtgatctgct 397
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>dbj|AK062490.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H06, full
           insert sequence
          Length = 628

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 167 ccgggctcgatggtgatcgaggtgatctgctngac 201
           |||||||||||| |||||| ||||||||||| |||
Sbjct: 376 ccgggctcgatgttgatcgcggtgatctgcttgac 342
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>gb|AY440951.1| Armigeres subalbatus ASAP ID: 39533 cytosolic small ribosomal
           subunit S20 mRNA sequence
          Length = 642

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 167 ccgggctcgatggtgatcgaggtgatctgct 197
           ||||| |||||| ||||||||||||||||||
Sbjct: 433 ccgggttcgatgttgatcgaggtgatctgct 403
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>gb|AC144805.9| Medicago truncatula clone mth2-72a11, complete sequence
          Length = 78128

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 179   gtgatcgaggtgatctgctngacaacatccgnggagctgacaaggtcaatcaccctcttg 238
             ||||| ||||| ||||||| ||||||||| |  || |||   |||||||| || ||||||
Sbjct: 49047 gtgattgaggtaatctgcttgacaacatcgggtgaactgtagaggtcaatgactctcttg 48988

                              
Query: 239   tgcacccgcatctcaaa 255
             ||||| |||| ||||||
Sbjct: 48987 tgcacacgcagctcaaa 48971
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>ref|NM_114372.3| Arabidopsis thaliana structural constituent of ribosome AT3G45030
           mRNA, complete cds
          Length = 609

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| || || || |||||||| || ||||| |||| ||| ||||| |  ||||||
Sbjct: 420 acctcaacaccaggttcaatggtgatggatgtgatttgcttgaccacatcaggagagctg 361

                                       
Query: 218 acaaggtcaatcaccctcttgtgcaccc 245
           |  || |||||||| | |||||||||||
Sbjct: 360 aagagatcaatcactcgcttgtgcaccc 333
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>ref|XM_968376.1| PREDICTED: Tribolium castaneum similar to CG15693-PA (LOC662265),
           mRNA
          Length = 498

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctg 195
           ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 430 acctccacgccgggctcaatgttgattgaggtgatctg 393
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>gb|AY114024.1| Arabidopsis thaliana putative 40S ribsomomal protein (At3g45030)
           mRNA, complete cds
          Length = 406

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| || || || |||||||| || ||||| |||| ||| ||||| |  ||||||
Sbjct: 350 acctcaacaccaggttcaatggtgatggatgtgatttgcttgaccacatcaggagagctg 291

                                       
Query: 218 acaaggtcaatcaccctcttgtgcaccc 245
           |  || |||||||| | |||||||||||
Sbjct: 290 aagagatcaatcactcgcttgtgcaccc 263
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>gb|AY096646.1| Arabidopsis thaliana putative 40S ribsomomal protein (At3g45030)
           mRNA, complete cds
          Length = 615

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
           |||||||| || || || |||||||| || ||||| |||| ||| ||||| |  ||||||
Sbjct: 420 acctcaacaccaggttcaatggtgatggatgtgatttgcttgaccacatcaggagagctg 361

                                       
Query: 218 acaaggtcaatcaccctcttgtgcaccc 245
           |  || |||||||| | |||||||||||
Sbjct: 360 aagagatcaatcactcgcttgtgcaccc 333
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>emb|AL353992.1|ATF14D17 Arabidopsis thaliana DNA chromosome 3, BAC clone F14D17
          Length = 89214

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 71/88 (80%)
 Strand = Plus / Plus

                                                                         
Query: 158   acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
             |||||||| || || || |||||||| || ||||| |||| ||| ||||| |  ||||||
Sbjct: 63346 acctcaacaccaggttcaatggtgatggatgtgatttgcttgaccacatcaggagagctg 63405

                                         
Query: 218   acaaggtcaatcaccctcttgtgcaccc 245
             |  || |||||||| | |||||||||||
Sbjct: 63406 aagagatcaatcactcgcttgtgcaccc 63433
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>gb|AY857478.1| Suberites domuncula S20 mRNA, complete cds
          Length = 354

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 274 accttctccacanggggacttcctggtggtgat 306
           |||||||||||| |||| ||||||||| |||||
Sbjct: 213 accttctccacaaggggtcttcctggtcgtgat 181
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>gb|AF400217.1| Spodoptera frugiperda ribosomal protein S20 mRNA, complete cds
          Length = 507

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 298 ggtggtgatgntgagcaccttggtgggca 326
           ||||||||||  |||||||||||||||||
Sbjct: 297 ggtggtgatgcggagcaccttggtgggca 269



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatctgct 197
           ||||| || |||||||||||| |||| || ||||||||||
Sbjct: 437 acctctacaccgggctcgatgttgatggaagtgatctgct 398
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>ref|NM_125624.2| Arabidopsis thaliana structural constituent of ribosome AT5G62300
           mRNA, complete cds
          Length = 637

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 176 atggtgatcgaggtgatctgctngacaacatc 207
           |||||||| ||||||||||||| ||| |||||
Sbjct: 426 atggtgatggaggtgatctgcttgaccacatc 395
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>gb|AC007772.6| Drosophila melanogaster clone BACR19P12, complete sequence
          Length = 186607

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 158    acctcaacgccgggctcgatggtgatcgaggtgatct 194
              ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 107493 acctctacgccgggctcgatgttgatggaggtaatct 107457
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>gb|BT000382.1| Arabidopsis thaliana 40S ribosomal protein S20 (At5g62300) mRNA,
           complete cds
          Length = 441

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 176 atggtgatcgaggtgatctgctngacaacatc 207
           |||||||| ||||||||||||| ||| |||||
Sbjct: 311 atggtgatggaggtgatctgcttgaccacatc 280
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>ref|XM_776941.1| PREDICTED: Strongylocentrotus purpuratus similar to 40S ribosomal
           protein S20 (LOC576658), mRNA
          Length = 673

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 170 ggctcgatggtgatcgaggtgatctgctngac 201
           ||||||||| |||| ||||||||||||| |||
Sbjct: 416 ggctcgatgctgatagaggtgatctgcttgac 385
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>emb|Y11119.1|DMRPS20 D.melanogaster mRNA for ribosomal protein S20
          Length = 524

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 421 acctctacgccgggctcgatgttgatggaggtaatct 385
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>ref|NM_079697.2| Drosophila melanogaster Ribosomal protein S20 CG15693-RA (RpS20),
           mRNA
          Length = 566

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 433 acctctacgccgggctcgatgttgatggaggtaatct 397
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>gb|AY071742.1| Drosophila melanogaster RH47995 full length cDNA
          Length = 542

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 432 acctctacgccgggctcgatgttgatggaggtaatct 396
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>gb|AY071353.1| Drosophila melanogaster RE38972 full length cDNA
          Length = 536

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 158 acctcaacgccgggctcgatggtgatcgaggtgatct 194
           ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 429 acctctacgccgggctcgatgttgatggaggtaatct 393
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 165     cgccgggctcgatggtgatcg 185
               |||||||||||||||||||||
Sbjct: 3226037 cgccgggctcgatggtgatcg 3226017
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>gb|AF325017.2|AF325017 Arabidopsis thaliana AT5g62300 (AT5g62300/mmi9_120) mRNA, complete
           cds
          Length = 615

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 176 atggtgatcgaggtgatctgctngacaacatc 207
           |||||||| ||||||||||||| ||| |||||
Sbjct: 405 atggtgatggaggtgatctgcttgaccacatc 374
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>gb|AF370460.1|AF370460 Arabidopsis thaliana 40S ribosomal protein S20 (MMI9.13) mRNA,
           complete cds
          Length = 615

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 176 atggtgatcgaggtgatctgctngacaacatc 207
           |||||||| ||||||||||||| ||| |||||
Sbjct: 405 atggtgatggaggtgatctgcttgaccacatc 374
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>gb|AY085673.1| Arabidopsis thaliana clone 16926 mRNA, complete sequence
          Length = 628

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 176 atggtgatcgaggtgatctgctngacaacatc 207
           |||||||| ||||||||||||| ||| |||||
Sbjct: 426 atggtgatggaggtgatctgcttgaccacatc 395
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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 94/120 (78%)
 Strand = Plus / Plus

                                                                          
Query: 158    acctcaacgccgggctcgatggtgatcgaggtgatctgctngacaacatccgnggagctg 217
              ||||| ||||| || ||||||||||| ||||| ||||| |  |||||||| | ||| |||
Sbjct: 124128 acctcgacgccaggttcgatggtgatagaggtaatctgtttaacaacatctggggaactg 124187

                                                                          
Query: 218    acaaggtcaatcaccctcttgtgcacccgcatctcaaaccgatcccaggngtngntacct 277
                 ||||| || || ||||||||||| || |  ||||| | |||||||| || | |||||
Sbjct: 124188 tagaggtcgatgactctcttgtgcacacggagttcaaatctatcccaggtgttggtacct 124247
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>dbj|AB019235.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMI9
          Length = 81736

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 176   atggtgatcgaggtgatctgctngacaacatc 207
             |||||||| ||||||||||||| ||| |||||
Sbjct: 42881 atggtgatggaggtgatctgcttgaccacatc 42912
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>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the
             complete sequence
          Length = 224529

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 158   acctcaacgccgggctcgatggtgatcgaggtgatct 194
             ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 69517 acctctacgccgggctcgatgttgatggaggtaatct 69481
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>gb|BT001877.1| Drosophila melanogaster SD11109 full insert cDNA
          Length = 2360

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 158  acctcaacgccgggctcgatggtgatcgaggtgatct 194
            ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 2235 acctctacgccgggctcgatgttgatggaggtaatct 2199
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    acgccgggctcgatggtgatc 184
              |||||||||||||||||||||
Sbjct: 932492 acgccgggctcgatggtgatc 932472
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>gb|AC122888.5| Mus musculus BAC clone RP23-93F11 from chromosome 3, complete sequence
          Length = 206760

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     catactacaaagtctaaaag 61
              ||||||||||||||||||||
Sbjct: 145882 catactacaaagtctaaaag 145901
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>gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, complete sequence
          Length = 194252

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    catactacaaagtctaaaag 61
             ||||||||||||||||||||
Sbjct: 21075 catactacaaagtctaaaag 21094
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>gb|L22355.1|MUSVCAM08 Mus musculus vascular adhesion cell molecule-1 (VCAM1) gene, exon 10
          Length = 2562

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   catactacaaagtctaaaag 61
            ||||||||||||||||||||
Sbjct: 1992 catactacaaagtctaaaag 2011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,775,259
Number of Sequences: 3902068
Number of extensions: 1775259
Number of successful extensions: 26147
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25908
Number of HSP's gapped (non-prelim): 236
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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