ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal0c04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 662 bits (334), Expect = 0.0 Identities = 362/374 (96%) Strand = Plus / Plus Query: 183 agatttctttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaa 242 |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 79877 agatttctttactatatttagtacaattgttatatgacacatgcttttttttatggggaa 79936 Query: 243 actacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79937 actacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggc 79996 Query: 303 tttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgc 362 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 79997 tttagtaataaataaattcgctttgtcgaaatccctataatgagtagcatttgcggctgc 80056 Query: 363 cgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcat 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80057 cgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcat 80116 Query: 423 aacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaac 482 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 80117 aacagtttcctcgtagtaacgccagcgaatctcgtcaagaactctttgtgctttgaaaac 80176 Query: 483 agacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80177 agacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggt 80236 Query: 543 tggaactttccttg 556 |||||||||||||| Sbjct: 80237 tggaactttccttg 80250 Score = 200 bits (101), Expect = 3e-48 Identities = 122/132 (92%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 79745 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctga 79804 Query: 91 aaccgagtggatttattttttgtcccatatttttctattctatannnnnnnnnactggga 150 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79805 aaccgagtggatttattttttgtcccatatttttctattctatatttttttttactggga 79864 Query: 151 atcgaaatctta 162 |||||||||||| Sbjct: 79865 atcgaaatctta 79876
>ref|XM_481016.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 628 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 627 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 568 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 567 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 508 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 507 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 448 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 447 cccgttcgaacttaagtagacgatcggttggtacttttcttg 406 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 936 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 878 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 877 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>ref|XM_481017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 628 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 627 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 568 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 567 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 508 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 507 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 448 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 447 cccgttcgaacttaagtagacgatcggttggtacttttcttg 406 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 936 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 878 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 877 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80109 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80168 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80169 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80228 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 80229 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 80288 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 80289 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 80348 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 80349 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 80408 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 80409 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 80468 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 80469 cccgttcgaacttaagtagacgatcggttggtacttttcttg 80510 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 79980 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 80038 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 80039 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80091
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80109 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80168 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80169 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80228 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 80229 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 80288 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 80289 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 80348 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 80349 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 80408 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 80409 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 80468 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 80469 cccgttcgaacttaagtagacgatcggttggtacttttcttg 80510 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 79980 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 80038 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 80039 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80091
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80052 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80111 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80112 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80171 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 80172 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 80231 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 80232 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 80291 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 80292 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 80351 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 80352 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 80411 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 80412 cccgttcgaacttaagtagacgatcggttggtacttttcttg 80453 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 79923 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 79981 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79982 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80034
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80097 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80156 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80157 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80216 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 80217 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 80276 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 80277 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 80336 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 80337 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 80396 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 80397 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 80456 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 80457 cccgttcgaacttaagtagacgatcggttggtacttttcttg 80498 Score = 178 bits (90), Expect = 1e-41 Identities = 106/110 (96%), Gaps = 1/110 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 79967 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 80025 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattc 130 |||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 80026 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattc 80075
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 70645 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 70586 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 70585 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 70526 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 70525 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 70466 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 70465 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 70406 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 70405 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 70346 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 70345 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 70286 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 70285 cccgttcgaacttaagtagacgatcggttggtacttttcttg 70244 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 70774 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 70716 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 70715 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 70663
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9212532 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9212591 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9212592 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9212651 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 9212652 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 9212711 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9212712 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 9212771 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 9212772 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 9212831 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 9212832 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 9212891 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 9212892 cccgttcgaacttaagtagacgatcggttggtacttttcttg 9212933 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9189572 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9189513 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9189512 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9189453 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 9189452 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 9189393 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9189392 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 9189333 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 9189332 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 9189273 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 9189272 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 9189213 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 9189212 cccgttcgaacttaagtagacgatcggttggtacttttcttg 9189171 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9112619 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9112560 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9112559 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9112500 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 9112499 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 9112440 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9112439 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 9112380 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 9112379 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 9112320 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 9112319 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 9112260 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 9112259 cccgttcgaacttaagtagacgatcggttggtacttttcttg 9112218 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9189701 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 9189643 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9189642 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9189590 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9112748 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 9112690 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9112689 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9112637 Score = 141 bits (71), Expect = 3e-30 Identities = 86/91 (94%) Strand = Plus / Minus Query: 365 aataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataa 424 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 11711485 aataaaccaactttaagatgggataagatgctcgatatggcatgaggttcaatatcataa 11711426 Query: 425 cagtttcctcgtagtaacgccaccgaatctc 455 |||||| |||||||||||||| |||||||| Sbjct: 11711425 tagtttcttcgtagtaacgccaacgaatctc 11711395 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 100 gatttattttttgtcccatatttttctattctat 133 |||||||||||||||||||||||||||||||||| Sbjct: 9212481 gatttattttttgtcccatatttttctattctat 9212514 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 326 tgtcgaaatccctataatgagttgcatttg 355 ||||||||||| |||||||||| ||||||| Sbjct: 18621596 tgtcgaaatccatataatgagtagcatttg 18621567
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9256962 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 9256903 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9256902 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9256843 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 9256842 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 9256783 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9256782 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 9256723 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 9256722 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 9256663 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 9256662 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 9256603 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 9256602 cccgttcgaacttaagtagacgatcggttggtacttttcttg 9256561 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9257091 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 9257033 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9257032 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9256980
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 68175 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 68116 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 68115 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 68056 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 68055 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 67996 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 67995 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 67936 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 67935 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 67876 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 67875 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 67816 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 67815 cccgttcgaacttaagtagacgatcggttggtacttttcttg 67774 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 68304 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 68246 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 68245 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 68193
>dbj|AK072149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P04, full insert sequence Length = 2475 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 628 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 627 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 568 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 567 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 508 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 507 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 448 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 447 cccgttcgaacttaagtagacgatcggttggtacttttcttg 406 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 936 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 878 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 877 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 527 bits (266), Expect = e-146 Identities = 366/402 (91%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80049 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80108 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80109 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80168 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 80169 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 80228 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 80229 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 80288 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 80289 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 80348 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 80349 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 80408 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 80409 cccgttcgaacttaagtagacgatcggttggtacttttcttg 80450 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 79920 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 79978 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79979 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80031
>ref|XM_479425.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2380 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 714 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 655 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 654 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 595 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 594 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 535 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 534 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagatg 475 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 474 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 415 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 414 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 355 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 354 cccgttcgaacttaagtagacgatcggttggtacttttcttg 313 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 843 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 785 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 784 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 732
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 14453591 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 14453532 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 14453531 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 14453472 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 14453471 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 14453412 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 14453411 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 14453352 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 14453351 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 14453292 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 14453291 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 14453232 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 14453231 cccgttcgaacttaagtagacgatcagttggtacttttcttg 14453190 Score = 406 bits (205), Expect = e-110 Identities = 288/315 (91%), Gaps = 3/315 (0%) Strand = Plus / Minus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 11893711 aactacgtcctcgagcccgaggtctgaatttattcataatagtact---actgacttcgg 11893655 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct: 11893654 ctttagtgatgaataaatttgctttgtcgaaatccctataatgagtagcatttgctgcta 11893595 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 11893594 ccgaataaaccaactttaagatgggataagatgctcgataaggcatgaggttcaatatca 11893535 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||||||||| |||||||||||||| |||||||| || |||||||||||| ||||||||| Sbjct: 11893534 taacagtttcttcgtagtaacgccaacgaatctcatccagaactctttgtactttgaaaa 11893475 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 | ||||| |||| |||||||||||||||||||| | ||||||||||||||| |||||| Sbjct: 11893474 cggacatgtggatgcgtttttgtgctttgaaaacccgttcgaacttaagtagatgatcgg 11893415 Query: 542 ttggaactttccttg 556 |||| ||||| |||| Sbjct: 11893414 ttggtacttttcttg 11893400 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 14453719 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 14453661 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14453660 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 14453608 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 11893927 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 11893869 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 11893868 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 11893816 Score = 125 bits (63), Expect = 2e-25 Identities = 69/71 (97%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 11893799 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 11893740 Query: 215 tatgacacatg 225 ||||||||||| Sbjct: 11893739 tatgacacatg 11893729
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 27925582 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 27925641 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 27925642 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 27925701 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 27925702 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 27925761 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 27925762 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagatg 27925821 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 27925822 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 27925881 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 27925882 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 27925941 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 27925942 cccgttcgaacttaagtagacgatcggttggtacttttcttg 27925983 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 27925453 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 27925511 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 27925512 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 27925564 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 310 atgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataa 369 ||||||||||| |||||||||||||||||||||||||| | |||||| | |||||||||| Sbjct: 10159884 atgaataaatttgctttgtcgaaatccctataatgagtagtatttgctgttgccgaataa 10159825 Query: 370 accaact 376 ||||||| Sbjct: 10159824 accaact 10159818 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/114 (84%), Gaps = 9/114 (7%) Strand = Plus / Minus Query: 403 ggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaaga 462 |||||||||||||||||||||| ||||| |||||||||||| ||||| | |||| Sbjct: 10159803 ggcatgaggttcagtatcataatggtttcttcgtagtaacgc------atctcatgaaga 10159750 Query: 463 actc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaac 515 |||| ||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 10159749 actcttttgtactttgaaaacggacat--ggatgtgtttttgtgctttgaaaac 10159698
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 88940 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 88999 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 89000 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 89059 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 89060 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 89119 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 89120 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagatg 89179 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 89180 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 89239 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 89240 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 89299 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 89300 cccgttcgaacttaagtagacgatcggttggtacttttcttg 89341 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 88811 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 88869 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88870 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 88922
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 14916 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 14975 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 14976 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 15035 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 15036 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 15095 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 15096 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagatg 15155 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 15156 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 15215 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 15216 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 15275 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||||||||| ||||| |||| Sbjct: 15276 cccgttcgaacttaagtagacgatcggttggtacttttcttg 15317 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 14787 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 14845 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14846 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 14898
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 145394 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 145335 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 145334 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 145275 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 145274 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 145215 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 145214 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 145155 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 145154 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 145095 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 145094 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 145035 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 145034 cccgttcgaacttaagtagacgatcagttggtacttttcttg 144993 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 145522 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 145464 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 145463 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 145411
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 519 bits (262), Expect = e-144 Identities = 365/402 (90%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 53156 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 53097 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 53096 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 53037 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 53036 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 52977 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 52976 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 52917 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 52916 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 52857 Query: 455 cgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaa 514 | || |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 52856 catccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaaa 52797 Query: 515 ctctctcgaacttaagtagacgatcggttggaactttccttg 556 | | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 52796 cccgttcgaacttaagtagacgatcagttggtacttttcttg 52755 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 53284 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 53226 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 53225 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 53173
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 513 bits (259), Expect = e-142 Identities = 366/403 (90%), Gaps = 1/403 (0%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 78290 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 78349 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 78350 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 78409 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 78410 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 78469 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 78470 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 78529 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 78530 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 78589 Query: 455 cgtcaagaactc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 513 | || ||||||| ||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 78590 catccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 78649 Query: 514 actctctcgaacttaagtagacgatcggttggaactttccttg 556 || | |||||||||||||||||||||||||| ||||| |||| Sbjct: 78650 acccgttcgaacttaagtagacgatcggttggtacttttcttg 78692 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 78160 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 78218 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 78219 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 78271
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 513 bits (259), Expect = e-142 Identities = 366/403 (90%), Gaps = 1/403 (0%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 12354 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 12413 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 12414 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 12473 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 12474 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 12533 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 12534 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 12593 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 12594 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 12653 Query: 455 cgtcaagaactc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 513 | || ||||||| ||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 12654 catccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 12713 Query: 514 actctctcgaacttaagtagacgatcggttggaactttccttg 556 || | |||||||||||||||||||||||||| ||||| |||| Sbjct: 12714 acccgttcgaacttaagtagacgatcggttggtacttttcttg 12756 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 12224 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 12282 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12283 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 12335
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 513 bits (259), Expect = e-142 Identities = 366/403 (90%), Gaps = 1/403 (0%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 10371898 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 10371957 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 10371958 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 10372017 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 10372018 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 10372077 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10372078 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 10372137 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 10372138 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 10372197 Query: 455 cgtcaagaactc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 513 | || ||||||| ||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 10372198 catccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 10372257 Query: 514 actctctcgaacttaagtagacgatcggttggaactttccttg 556 || | |||||||||||||||||||||||||| ||||| |||| Sbjct: 10372258 acccgttcgaacttaagtagacgatcggttggtacttttcttg 10372300 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 10371768 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 10371826 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10371827 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 10371879
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 513 bits (259), Expect = e-142 Identities = 366/403 (90%), Gaps = 1/403 (0%) Strand = Plus / Plus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 10377937 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 10377996 Query: 215 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 274 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 10377997 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 10378056 Query: 275 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttgtcgaaat 334 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 10378057 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttgtcgaaat 10378116 Query: 335 ccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatg 394 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10378117 ccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagatg 10378176 Query: 395 ctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| Sbjct: 10378177 ctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatct 10378236 Query: 455 cgtcaagaactc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 513 | || ||||||| ||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 10378237 catccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 10378296 Query: 514 actctctcgaacttaagtagacgatcggttggaactttccttg 556 || | |||||||||||||||||||||||||| ||||| |||| Sbjct: 10378297 acccgttcgaacttaagtagacgatcggttggtacttttcttg 10378339 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 10377807 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 10377865 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10377866 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 10377918
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 466 bits (235), Expect = e-128 Identities = 295/315 (93%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 81914 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 81973 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||| Sbjct: 81974 ctttagtgatgaataaattcgttttgtcgaaatccctataatgagtagcatttgctgctg 82033 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 82034 ccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatca 82093 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 82094 taacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaaa 82153 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 |||||||| | || |||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 82154 cagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcgg 82213 Query: 542 ttggaactttccttg 556 |||||||||| |||| Sbjct: 82214 ttggaacttttcttg 82228 Score = 184 bits (93), Expect = 2e-43 Identities = 106/109 (97%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 81691 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 81749 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 129 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 81750 ccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 81798 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 144 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 203 |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| Sbjct: 81816 actgggaatcgaaatcttagattgatctaaagattattttgatttctttactatatttag 81875 Query: 204 tacaattgttatatgacacat 224 |||||||||||||| |||||| Sbjct: 81876 tacaattgttatattacacat 81896
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 466 bits (235), Expect = e-128 Identities = 295/315 (93%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 81944 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 82003 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||| Sbjct: 82004 ctttagtgatgaataaattcgttttgtcgaaatccctataatgagtagcatttgctgctg 82063 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 82064 ccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatca 82123 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 82124 taacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaaa 82183 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 |||||||| | || |||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 82184 cagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcgg 82243 Query: 542 ttggaactttccttg 556 |||||||||| |||| Sbjct: 82244 ttggaacttttcttg 82258 Score = 184 bits (93), Expect = 2e-43 Identities = 106/109 (97%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 81721 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 81779 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 129 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 81780 ccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 81828 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 144 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 203 |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| Sbjct: 81846 actgggaatcgaaatcttagattgatctaaagattattttgatttctttactatatttag 81905 Query: 204 tacaattgttatatgacacat 224 |||||||||||||| |||||| Sbjct: 81906 tacaattgttatattacacat 81926
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 458 bits (231), Expect = e-126 Identities = 294/315 (93%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3053 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 3112 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||| | |||||||||||||||||||||||| |||||||| |||| Sbjct: 3113 ctttagtgatgaataaatttgttttgtcgaaatccctataatgagtagcatttgctgctg 3172 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 3173 ccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatca 3232 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 3233 taacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaaa 3292 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 |||||||| | || |||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 3293 cagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcgg 3352 Query: 542 ttggaactttccttg 556 |||||||||| |||| Sbjct: 3353 ttggaacttttcttg 3367 Score = 184 bits (93), Expect = 2e-43 Identities = 106/109 (97%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2832 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 2890 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 129 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2891 ccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 2939 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 144 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 203 ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 2955 actgggaatcgaaattttagattgatctaaagattatttagatttctttactatatttag 3014 Query: 204 tacaattgttatatgacacat 224 |||||||||||||| |||||| Sbjct: 3015 tacaattgttatattacacat 3035
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 458 bits (231), Expect = e-126 Identities = 294/315 (93%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 82610 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 82669 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||| | |||||||||||||||||||||||| |||||||| |||| Sbjct: 82670 ctttagtgatgaataaatttgttttgtcgaaatccctataatgagtagcatttgctgctg 82729 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 82730 ccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatca 82789 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 82790 taacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaaa 82849 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 |||||||| | || |||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 82850 cagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcgg 82909 Query: 542 ttggaactttccttg 556 |||||||||| |||| Sbjct: 82910 ttggaacttttcttg 82924 Score = 184 bits (93), Expect = 2e-43 Identities = 106/109 (97%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 82389 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 82447 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 129 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 82448 ccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 82496 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 144 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 203 ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 82512 actgggaatcgaaattttagattgatctaaagattatttagatttctttactatatttag 82571 Query: 204 tacaattgttatatgacacat 224 |||||||||||||| |||||| Sbjct: 82572 tacaattgttatattacacat 82592
>emb|Y00329.1|CHZMRP22 Maize chloroplast rpl22 gene for ribosomal protein L22 Length = 607 Score = 452 bits (228), Expect = e-124 Identities = 295/316 (93%), Gaps = 1/316 (0%) Strand = Plus / Minus Query: 242 aactacgtcctcgagctcgaggtctgaatttctt-cataatagtactcctactgacttcg 300 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 481 aactacgtcctcgagctcgaggtctgaatttttttcataatagtactcctactgacttcg 422 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||| Sbjct: 421 gctttagtgatgaataaattcgttttgtcgaaatccctataatgagtagcatttgctgct 362 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 361 gccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatc 302 Query: 421 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 480 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 301 ataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaa 242 Query: 481 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 540 ||||||||| | || |||||||||||||||||||| | ||||| ||||||||||||||| Sbjct: 241 acagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcg 182 Query: 541 gttggaactttccttg 556 ||||||||||| |||| Sbjct: 181 gttggaacttttcttg 166 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 152 tcgaaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattg 211 |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 571 tcgaaatcttagattgatctaaagaccattttgatttctttactatatttagtacaattg 512 Query: 212 ttatatgacacat 224 |||||| |||||| Sbjct: 511 ttatattacacat 499 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ttgtcccatatttttctatt 129 |||||||||||||||||||| Sbjct: 607 ttgtcccatatttttctatt 588
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 406 bits (205), Expect = e-110 Identities = 288/315 (91%), Gaps = 3/315 (0%) Strand = Plus / Minus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 75201 aactacgtcctcgagcccgaggtctgaatttattcataatagtact---actgacttcgg 75145 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct: 75144 ctttagtgatgaataaatttgctttgtcgaaatccctataatgagtagcatttgctgcta 75085 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 75084 ccgaataaaccaactttaagatgggataagatgctcgataaggcatgaggttcaatatca 75025 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 |||||||||| |||||||||||||| |||||||| || |||||||||||| ||||||||| Sbjct: 75024 taacagtttcttcgtagtaacgccaacgaatctcatccagaactctttgtactttgaaaa 74965 Query: 482 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 541 | ||||| |||| |||||||||||||||||||| | ||||||||||||||| |||||| Sbjct: 74964 cggacatgtggatgcgtttttgtgctttgaaaacccgttcgaacttaagtagatgatcgg 74905 Query: 542 ttggaactttccttg 556 |||| ||||| |||| Sbjct: 74904 ttggtacttttcttg 74890 Score = 184 bits (93), Expect = 2e-43 Identities = 109/113 (96%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 75417 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 75359 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 133 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 75358 ccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 75306 Score = 125 bits (63), Expect = 2e-25 Identities = 69/71 (97%) Strand = Plus / Minus Query: 155 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 214 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 75289 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 75230 Query: 215 tatgacacatg 225 ||||||||||| Sbjct: 75229 tatgacacatg 75219
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 365 bits (184), Expect = 1e-97 Identities = 311/355 (87%), Gaps = 2/355 (0%) Strand = Plus / Minus Query: 191 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 250 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 18328526 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 18328467 Query: 251 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 310 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 18328466 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 18328407 Query: 311 tgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaa 370 |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| Sbjct: 18328406 tgaacaaatttgctttgtcgaaatccttataatgagtagcatttgctgctgccgaataaa 18328347 Query: 371 ccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagttt 430 ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct: 18328346 ccaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagttt 18328287 Query: 431 cctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacatag 490 | |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 18328286 cttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatgt 18328227 Query: 491 ggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg 545 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| Sbjct: 18328226 ggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttgg 18328174
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 365 bits (184), Expect = 1e-97 Identities = 311/355 (87%), Gaps = 2/355 (0%) Strand = Plus / Minus Query: 191 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 250 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 18254847 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 18254788 Query: 251 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 310 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 18254787 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 18254728 Query: 311 tgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaa 370 |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| Sbjct: 18254727 tgaacaaatttgctttgtcgaaatccttataatgagtagcatttgctgctgccgaataaa 18254668 Query: 371 ccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagttt 430 ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct: 18254667 ccaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagttt 18254608 Query: 431 cctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacatag 490 | |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 18254607 cttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatgt 18254548 Query: 491 ggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg 545 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| Sbjct: 18254547 ggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttgg 18254495
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 177034 Score = 365 bits (184), Expect = 1e-97 Identities = 311/355 (87%), Gaps = 2/355 (0%) Strand = Plus / Plus Query: 191 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 250 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 42468 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 42527 Query: 251 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 310 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 42528 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 42587 Query: 311 tgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaa 370 |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| Sbjct: 42588 tgaacaaatttgctttgtcgaaatccttataatgagtagcatttgctgctgccgaataaa 42647 Query: 371 ccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagttt 430 ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct: 42648 ccaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagttt 42707 Query: 431 cctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacatag 490 | |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 42708 cttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatgt 42767 Query: 491 ggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg 545 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| Sbjct: 42768 ggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttgg 42820
>emb|Y00340.1|CHZMRPS3 Maize chloroplast rps3 gene for ribosomal protein S3 Length = 731 Score = 184 bits (93), Expect = 2e-43 Identities = 106/109 (97%), Gaps = 1/109 (0%) Strand = Plus / Minus Query: 21 gaccttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgta 80 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 125 gaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgggttgta 67 Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 129 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 66 ccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 18
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 182 bits (92), Expect = 8e-43 Identities = 119/128 (92%) Strand = Plus / Plus Query: 320 tcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaacttta 379 |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| Sbjct: 212531 tcgctttgtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaacttta 212590 Query: 380 agatgggataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagt 439 |||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||| Sbjct: 212591 agatgggataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagt 212650 Query: 440 aacgccac 447 || ||||| Sbjct: 212651 aaggccac 212658
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 182 bits (92), Expect = 8e-43 Identities = 119/128 (92%) Strand = Plus / Plus Query: 320 tcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaacttta 379 |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| Sbjct: 553553 tcgctttgtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaacttta 553612 Query: 380 agatgggataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagt 439 |||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||| Sbjct: 553613 agatgggataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagt 553672 Query: 440 aacgccac 447 || ||||| Sbjct: 553673 aaggccac 553680
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 182 bits (92), Expect = 8e-43 Identities = 119/128 (92%) Strand = Plus / Plus Query: 320 tcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaacttta 379 |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| Sbjct: 456830 tcgctttgtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaacttta 456889 Query: 380 agatgggataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagt 439 |||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||| Sbjct: 456890 agatgggataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagt 456949 Query: 440 aacgccac 447 || ||||| Sbjct: 456950 aaggccac 456957
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 182 bits (92), Expect = 8e-43 Identities = 119/128 (92%) Strand = Plus / Plus Query: 320 tcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaacttta 379 |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| Sbjct: 230065 tcgctttgtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaacttta 230124 Query: 380 agatgggataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagt 439 |||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||| Sbjct: 230125 agatgggataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagt 230184 Query: 440 aacgccac 447 || ||||| Sbjct: 230185 aaggccac 230192
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 141 bits (71), Expect = 3e-30 Identities = 86/91 (94%) Strand = Plus / Minus Query: 365 aataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataa 424 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 34272 aataaaccaactttaagatgggataagatgctcgatatggcatgaggttcaatatcataa 34213 Query: 425 cagtttcctcgtagtaacgccaccgaatctc 455 |||||| |||||||||||||| |||||||| Sbjct: 34212 tagtttcttcgtagtaacgccaacgaatctc 34182
>gb|DQ069462.1| Yucca schidigera ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 660 Score = 137 bits (69), Expect = 4e-29 Identities = 81/85 (95%) Strand = Plus / Minus Query: 34 aattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaac 93 ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| Sbjct: 85 aattttttggttgtgcgaaccaaaaggaatgatgattttgggttgtaccaagtctgaaac 26 Query: 94 cgagtggatttattttttgtcccat 118 | ||||||||||||||||||||||| Sbjct: 25 caagtggatttattttttgtcccat 1
>gb|DQ069461.1| Typha latifolia ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 135 bits (68), Expect = 2e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| | Sbjct: 88 aataattttttggttgtgcgaaccaaaaggaatgatgactttgggttgtaccaagtctga 29 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| ||||||||||||||||||||||| Sbjct: 28 aaccaagtggatttattttttgtcccat 1
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 133 bits (67), Expect = 7e-28 Identities = 169/203 (83%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | | |||| || | |||||||| Sbjct: 86299 aaactacgtcctcgagctcgaggtttcaatttcttcacagtcgtacccccattgacttcg 86358 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| |||| | | || || ||| || | | |||||||| ||| Sbjct: 86359 gctttactaatgactaaattggcttcgctggaacccatattataactagcatttgctgct 86418 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 86419 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 86478 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 86479 ataagcgtttcctcataggaacg 86501 Score = 99.6 bits (50), Expect = 9e-18 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 22 accttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtac 81 |||||||| |||||||||||||||||| ||||||| |||||| || ||||||||||| Sbjct: 86050 accttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggttgtac 86108 Query: 82 caagtctaaaaccgagtggatttattttttgtcccata 119 | ||||| ||||| |||||||||||||||||||||||| Sbjct: 86109 ccagtctgaaaccaagtggatttattttttgtcccata 86146
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||| Sbjct: 19394 aataattttttggttgtgcaaaccaaaaggaatgatgactttgggttgtaccaagcctaa 19453 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 19454 aaccaagtggatttattttttgtcccata 19482
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 123 bits (62), Expect = 7e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||||||||||||||||||| | || ||||||||||||||||||| | Sbjct: 89045 aataattttttggttgtgcgaaccaaaaggaacgatgactttgggttgtaccaagtctga 89104 Query: 91 aaccgagtggatttattttttgtcccatat 120 |||| |||||||||||||| |||||||||| Sbjct: 89105 aaccaagtggatttattttctgtcccatat 89134 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 293 tgacttcggctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcat 352 |||||||||||||| |||| ||||||| |||| | ||| |||||| ||| | |||| Sbjct: 89310 tgacttcggctttactaataaataaatcagcttctttcaaacccctattgtgactagcat 89369 Query: 353 ttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggt 412 |||| ||||| |||||||| || || || ||||| ||| |||||||||| |||||||| | Sbjct: 89370 ttgctgctgcggaataaactaatttgaaaatggggtaacatgctcgataaggcatgagtt 89429 Query: 413 tcagtatcataa 424 ||||||||||| Sbjct: 89430 ccagtatcataa 89441
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||| ||||||| |||||| || |||||||||||||||||| | Sbjct: 85251 aataattttttggttgtgcaaaccaaagggaatgatgaccttgggttgtaccaagtctga 85310 Query: 91 aaccgagtggatttattttttgtcccata 119 ||||||||||||||||||||||||||||| Sbjct: 85311 aaccgagtggatttattttttgtcccata 85339 Score = 103 bits (52), Expect = 6e-19 Identities = 151/184 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| ||||||| | |||||||| Sbjct: 85507 aaactacgtcctcgagctcgaggttttaatttcttcacgatagtaccctcgctgacttca 85566 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||| | |||||| | || || | ||||| ||| | | | |||||||| ||| Sbjct: 85567 gctttactaataactaaatttgattcgttggaatccatattgtaactagcatttgctgct 85626 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| |||||||||| |||||||| | |||||| Sbjct: 85627 gcagaataaaccaatttaaaaatgggataacatgctcgataaggcatgagttctagtatc 85686 Query: 421 ataa 424 |||| Sbjct: 85687 ataa 85690
>gb|DQ069459.1| Nuphar advena ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||||||||||||||||||| | || ||||||||||||||||||| | Sbjct: 88 aataattttttggttgtgcgaaccaaaaggaacgatgactttgggttgtaccaagtctga 29 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| |||||||||||||| |||||||| Sbjct: 28 aaccaagtggatttattttctgtcccat 1
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 117 bits (59), Expect = 4e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 86052 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 86111 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| |||| | | || || ||| | | | |||||||| ||| Sbjct: 86112 gctttactaatgactaaattggcttcgctggaacccatattgtaactagcatttgctgct 86171 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||| ||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 86172 gcagaataaatcaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 86231 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 86232 ataagcgtttcctcataggaacg 86254 Score = 99.6 bits (50), Expect = 9e-18 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 22 accttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtac 81 |||||||| |||||||||||||||||| ||||||| |||||| || ||||||||||| Sbjct: 85803 accttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggttgtac 85861 Query: 82 caagtctaaaaccgagtggatttattttttgtcccata 119 | ||||| ||||| |||||||||||||||||||||||| Sbjct: 85862 ccagtctgaaaccaagtggatttattttttgtcccata 85899
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 117 bits (59), Expect = 4e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85177 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85236 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| | || || | || || ||| | | | |||||||| ||| Sbjct: 85237 gctttactaatgactaaattggtttcgttggaacccatattgtaactagcatttgctgct 85296 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 85297 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 85356 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 85357 ataagcgtttcctcataggaacg 85379 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| ||||||| ||||||| |||||| || |||||||||||| ||||| | Sbjct: 84936 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 84995 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 84996 aaccaagtggatttattttttgtcccata 85024
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||| ||||||||||||||||||||| |||| | || ||||||||| ||||||||| | Sbjct: 83024 aataactttttggttgtgcgaaccaaagggaaagatgactttgggttgcaccaagtctga 83083 Query: 91 aaccgagtggatttattttttgtcccatatttttctatt 129 |||| ||||||||||||||||||||||||| |||||||| Sbjct: 83084 aaccaagtggatttattttttgtcccatatctttctatt 83122 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||| || |||||||| ||||| || ||| ||||||||||||| ||||| Sbjct: 83378 gcatttgctgctgcagagtaaaccaattttaaaataggaaaagatgctcgataaggcatc 83437 Query: 409 aggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 454 || | |||||||||| |||||||| ||| |||||| ||||||| Sbjct: 83438 agttctagtatcataattgtttcctcataggaacgcccacgaatct 83483
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 117 bits (59), Expect = 4e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 86050 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 86109 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| |||| | | || || ||| | | | |||||||| ||| Sbjct: 86110 gctttactaatgactaaattggcttcgctggaacccatattgtaactagcatttgctgct 86169 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||| ||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 86170 gcagaataaatcaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 86229 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 86230 ataagcgtttcctcataggaacg 86252 Score = 99.6 bits (50), Expect = 9e-18 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 22 accttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtac 81 |||||||| |||||||||||||||||| ||||||| |||||| || ||||||||||| Sbjct: 85801 accttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggttgtac 85859 Query: 82 caagtctaaaaccgagtggatttattttttgtcccata 119 | ||||| ||||| |||||||||||||||||||||||| Sbjct: 85860 ccagtctgaaaccaagtggatttattttttgtcccata 85897
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 117 bits (59), Expect = 4e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 85821 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 85880 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| |||| | | || || ||| | | | |||||||| ||| Sbjct: 85881 gctttactaatgactaaattggcttcgctggaacccatattgtaactagcatttgctgct 85940 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| |||| |||||||||||||| | |||||| Sbjct: 85941 gcagaataaaccaatttcaaaatgggataacatgcccgatagggcatgagttctagtatc 86000 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 86001 ataagcgtttcctcataggaacg 86023 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||||| ||||||| |||||| || ||| |||||||| ||||| | Sbjct: 85580 aataattttttggttgtgaaaaccaaagggaatgatgaccttgagttgtacccagtctga 85639 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 85640 aaccaagtggatttattttttgtcccata 85668
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 117 bits (59), Expect = 4e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85189 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85248 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| | || || | || || ||| | | | |||||||| ||| Sbjct: 85249 gctttactaatgactaaattggtttcgttggaacccatattgtaactagcatttgctgct 85308 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 85309 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 85368 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 85369 ataagcgtttcctcataggaacg 85391 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| ||||||| ||||||| |||||| || |||||||||||| ||||| | Sbjct: 84948 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 85007 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 85008 aaccaagtggatttattttttgtcccata 85036
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||||||||||| |||||| || |||||||||||||||||| | Sbjct: 83275 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 83334 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| | ||||||||||||||||||||| Sbjct: 83335 aaccaattggatttattttttgtcccat 83362
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||||||||||| |||||| || |||||||||||||||||| | Sbjct: 82744 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 82803 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| | ||||||||||||||||||||| Sbjct: 82804 aaccaattggatttattttttgtcccat 82831 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||| ||||||||||||||| | ||| ||||||| ||||||| || | |||||| Sbjct: 82982 aaactacgccctcgagctcgaggttttaatctcttcatgatagtacctttatttacttcg 83041 Query: 301 gctttagtaatgaataaattcgctt 325 |||||| |||| | |||||| |||| Sbjct: 83042 gctttactaatcactaaatttgctt 83066
>gb|AY727185.1| Pseudotrillium rivale psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1015 Score = 111 bits (56), Expect = 2e-21 Identities = 200/248 (80%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 202 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 261 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||| |||| ||||||||| ||| | || || | |||||| ||||||| |||| Sbjct: 262 ctttactaataaataaattcacttccttcaagcccaggttatgagtagcatttgatgctg 321 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | ||||||||||| || || |||||||||||||| ||||| |||||||| | |||||||| Sbjct: 322 cagaataaaccaatttcaaaatgggataagatgcccgataaggcatgagttccagtatca 381 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 ||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||||||| Sbjct: 382 taagtgtgtccgcataggaacgcccgcgaatctgatcaattactcttcgtgctttgaaaa 441 Query: 482 cagacata 489 |||||||| Sbjct: 442 cagacata 449
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||||||||||| |||||| || |||||||||||||||||| | Sbjct: 83273 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 83332 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| | ||||||||||||||||||||| Sbjct: 83333 aaccaattggatttattttttgtcccat 83360
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 109 bits (55), Expect = 1e-20 Identities = 166/203 (81%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85341 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85400 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| | || | | || || ||| | | | |||||||| ||| Sbjct: 85401 gctttactaatgactaaattggtttcgctggaacccatattgtaactagcatttgctgct 85460 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 85461 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 85520 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 85521 ataagcgtttcctcataggaacg 85543 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| ||||||| ||||||| |||||| || ||||||||||||| ||||| | Sbjct: 85100 aataatttttgggttgtgaaaaccaaagggaatgatgactttgggttgtacccagtctga 85159 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 85160 aaccaagtggatttattttttgtcccata 85188
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 109 bits (55), Expect = 1e-20 Identities = 166/203 (81%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85338 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85397 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| | || | | || || ||| | | | |||||||| ||| Sbjct: 85398 gctttactaatgactaaattggtttcgctggaacccatattgtaactagcatttgctgct 85457 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 85458 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 85517 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 85518 ataagcgtttcctcataggaacg 85540 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| ||||||| ||||||| |||||| || ||||||||||||| ||||| | Sbjct: 85097 aataatttttgggttgtgaaaaccaaagggaatgatgactttgggttgtacccagtctga 85156 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 85157 aaccaagtggatttattttttgtcccata 85185
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 109 bits (55), Expect = 1e-20 Identities = 166/203 (81%) Strand = Plus / Plus Query: 241 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 300 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85224 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85283 Query: 301 gctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggct 360 |||||| |||||| |||||| | || | | || || ||| | | | |||||||| ||| Sbjct: 85284 gctttactaatgactaaattggtttcgctggaacccatattgtaactagcatttgctgct 85343 Query: 361 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 420 || ||||||||||| || || ||||||||| ||||||||||||||||||| | |||||| Sbjct: 85344 gcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtatc 85403 Query: 421 ataacagtttcctcgtagtaacg 443 |||| |||||||| ||| |||| Sbjct: 85404 ataagcgtttcctcataggaacg 85426 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| ||||||| ||||||| |||||| || |||||||||||| ||||| | Sbjct: 84983 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 85042 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 85043 aaccaagtggatttattttttgtcccata 85071
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 107 bits (54), Expect = 4e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 22 accttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtac 81 |||||||| |||| |||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 83387 accttcag-aatacttttttggttgtgcaaaccaaagagaatgatgactttgggttgtac 83445 Query: 82 caagtctaaaaccgagtggatttattttttgtcccata 119 ||||||| ||||| |||||||||||||||||||||||| Sbjct: 83446 caagtctgaaaccaagtggatttattttttgtcccata 83483 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 364 gaataaaccaactttaagatgggataagatgctcgatagggcat 407 ||||||||||| || || ||||||||| || ||||||| ||||| Sbjct: 83762 gaataaaccaatttaaaaatgggataacatcctcgataaggcat 83805
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||| ||||||| ||||| || |||||||||||||||||| | Sbjct: 88249 aataattttttggttgtgcaaaccaaagcgaatgatgaccttgggttgtaccaagtctga 88308 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 88309 aacccagtggatttattttttgtcccata 88337 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttca 277 ||||||||||||||||||||||| | ||||| |||| Sbjct: 88506 aactacgtcctcgagctcgaggtttcaattttttca 88541
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 105 bits (53), Expect = 2e-19 Identities = 87/97 (89%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 22 accttcagnaataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtac 81 |||||||| |||| |||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 82490 accttcag-aatacttttttggttgtgcaaaccaaatagaatgatgactttgggttgtac 82548 Query: 82 caagtctaaaaccgagtggatttattttttgtcccat 118 ||||||| ||||| ||||||||||||||||||||||| Sbjct: 82549 caagtctgaaaccaagtggatttattttttgtcccat 82585
>gb|DQ069457.1| Acorus americanus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||| ||||||||||||||||||||| |||| | || ||||||||| ||||||||| | Sbjct: 88 aataactttttggttgtgcgaaccaaagggaaagatgactttgggttgcaccaagtctga 29 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| ||||||||||||||||||||||| Sbjct: 28 aaccaagtggatttattttttgtcccat 1
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 34 aattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaac 93 |||||||||||| |||||||||||| ||||| || |||| ||||| |||||||| |||| Sbjct: 85491 aattttttggttttgcgaaccaaaaagaatgatgactttgagttgttccaagtctgaaac 85550 Query: 94 cgagtggatttattttttgtcccatatt 121 | |||||||||||||||||||||||||| Sbjct: 85551 caagtggatttattttttgtcccatatt 85578 Score = 71.9 bits (36), Expect = 2e-09 Identities = 195/248 (78%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||||||||||||||| || ||| | || || ||||||||||| | ||| ||||||| | Sbjct: 85691 aactacgtcctcgagcccggggttttaactttttcataatagtgcctctattgacttcag 85750 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||| |||| ||||| | ||| | ||| || ||| |||| | |||||||| |||| Sbjct: 85751 ctttactaataaataagtcaacttcattcaaacccatattatgactagcatttgctgctg 85810 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | |||||||| || |||||||| ||||||||||| | ||| ||||| || | ||||||| Sbjct: 85811 cagaataaactaattttaagattggataagatgccctataaggcattagttctagtatca 85870 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 | | | |||||| || |||| | ||||||| |||| |||||| |||||||||||| Sbjct: 85871 tgagtgcttcctcataagaacgtccacgaatctgatcaattactcttcgtgctttgaaaa 85930 Query: 482 cagacata 489 |||||||| Sbjct: 85931 cagacata 85938
>gb|DQ006171.1| Commelina communis voucher Wells 4872 US psbA-trnH intergenic spacer and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 770 Score = 99.6 bits (50), Expect = 9e-18 Identities = 118/141 (83%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||| | ||||||||| ||||| |||| ||||||||||||||| ||||| Sbjct: 57 gcatttgctgctgcnggataaaccaattttaaaatggtataagatgctcgataaggcata 116 Query: 409 aggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctt 468 || | ||||||||||| |||||||| || |||| | ||||| | |||| |||||| Sbjct: 117 agttccagtatcataagtgtttcctcatacgaacggccgcgaatttgatcaattactctt 176 Query: 469 tgtgctttgaaaacagacata 489 ||||||||||||||||||||| Sbjct: 177 tgtgctttgaaaacagacata 197
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||| ||||| |||||||| ||||||| ||||| || ||||||||||||||||||| | Sbjct: 87864 aatactttttcggttgtgcaaaccaaagagaatgatgactttgggttgtaccaagtctga 87923 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 87924 aaccaagtggatttattttttgtcccata 87952 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||| |||||| Sbjct: 88237 gcatttgctgctgcagaataaaccaattttaaaatgggataacatgctcgataaggcatg 88296 Query: 409 aggttcagtatcataacagtttcctcgtagtaacg 443 || | |||||||||| ||||| |||||| |||| Sbjct: 88297 agttctagtatcataagtgtttcttcgtaggaacg 88331
>gb|DQ069460.1| Ranunculus macranthus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 651 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||| ||||||| ||||| || |||||||||||||||| | | Sbjct: 88 aataattttttggttgtgcaaaccaaacagaatgatggctttgggttgtaccaagccgga 29 Query: 91 aaccgagtggatttattttttgtcccat 118 | |||||||||||||||||||||||||| Sbjct: 28 acccgagtggatttattttttgtcccat 1
>gb|AY727187.1| Trillium ovatum psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1029 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 219 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 278 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||| | |||| ||||||||| ||| | || || | |||||| || |||| |||| Sbjct: 279 cttgactaataaataaattcacttccttcaagcccaggttatgagtagcgtttgatgctg 338 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | ||||||||||| || || |||||||||||||| ||||| |||||||| | |||||||| Sbjct: 339 cagaataaaccaatttcaaaatgggataagatgcccgataaggcatgagttccagtatca 398 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 ||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||||||| Sbjct: 399 taagtgtgtccgcataggaacgcccgcgaatctgatcaattactcttcgtgctttgaaaa 458 Query: 482 cagacata 489 |||||||| Sbjct: 459 cagacata 466
>dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22 Length = 127365 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 310 atgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataa 369 ||||||||||| |||||||||||||||||||||||||| | |||||| | |||||||||| Sbjct: 18621 atgaataaatttgctttgtcgaaatccctataatgagtagtatttgctgttgccgaataa 18562 Query: 370 accaact 376 ||||||| Sbjct: 18561 accaact 18555 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/114 (84%), Gaps = 9/114 (7%) Strand = Plus / Minus Query: 403 ggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaaga 462 |||||||||||||||||||||| ||||| |||||||||||| ||||| | |||| Sbjct: 18540 ggcatgaggttcagtatcataatggtttcttcgtagtaacgc------atctcatgaaga 18487 Query: 463 actc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaac 515 |||| ||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 18486 actcttttgtactttgaaaacggacat--ggatgtgtttttgtgctttgaaaac 18435
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 39 tttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccgagt 98 ||||||||||||||||||| |||| | || |||||||||| |||||||| ||||| ||| Sbjct: 90030 tttggttgtgcgaaccaaagggaacgatgactttgggttgtgccaagtctgaaaccaagt 90089 Query: 99 ggatttattttttgtcccatat 120 ||||||||||| |||||||||| Sbjct: 90090 ggatttattttctgtcccatat 90111
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||| ||||||||||||||||||||| |||||| || ||||| || |||||||| | Sbjct: 84500 aataactttttggttgtgcgaaccaaagggaatgatgactttggttttcaccaagtcgga 84559 Query: 91 aaccgagtggatttattttttgtcccatat 120 |||||||||||||||||||||| ||||||| Sbjct: 84560 aaccgagtggatttattttttgccccatat 84589 Score = 81.8 bits (41), Expect = 2e-12 Identities = 197/249 (79%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 ||||||||||| ||| |||||| | || || |||| ||||||| || | ||||||||| Sbjct: 84744 aactacgtcctttagcccgaggtttaaactttttcacgatagtacccccattgacttcgg 84803 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||||| |||||||| ||| |||| || ||| | ||| ||| | |||||||| |||| Sbjct: 84804 ctttactaatgaatgaatcagcttcgttaaaactcttattgtgactagcatttgctgctg 84863 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | |||||||||| || || |||||||||||||||||||| |||||||| | ||||| || Sbjct: 84864 cagaataaaccagtttaaaaatgggataagatgctcgataaggcatgagttccagtagca 84923 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 ||| |||||| | ||| |||| | ||||||| |||| |||||| |||||||| | Sbjct: 84924 taagtgtttccgcataggaacgtccacgaatctgatcaacgactcttcgtgctttgtgag 84983 Query: 482 cagacatag 490 ||||||||| Sbjct: 84984 cagacatag 84992
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 91.7 bits (46), Expect = 2e-15 Identities = 157/194 (80%) Strand = Plus / Plus Query: 250 cctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagta 309 ||||||||||||||| | ||||| |||||| |||||| | ||||||| |||||| || Sbjct: 88364 cctcgagctcgaggttttaattttttcatagtagtaccctcgttgacttcagctttacta 88423 Query: 310 atgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctgccgaataa 369 || | |||| | |||| | |||| || ||| |||| | |||||||| ||||| |||||| Sbjct: 88424 ataactaaacttgcttcattgaaacccatattatgactagcatttgctgctgcagaataa 88483 Query: 370 accaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagtt 429 |||||||| || ||||||||| | |||||||| ||||| || | |||||||||| ||| Sbjct: 88484 accaacttaaaaatgggataacacgctcgataaggcataagttcgagtatcataagtgtt 88543 Query: 430 tcctcgtagtaacg 443 ||||||||| |||| Sbjct: 88544 tcctcgtaggaacg 88557 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||| | |||||| ||||||| ||||| || |||||||||||||||||| | Sbjct: 88111 aataatttttggcttgtgcaaaccaaatagaatgatgaccttgggttgtaccaagtctga 88170 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| |||||||||||||||||||||||| Sbjct: 88171 aaccaagtggatttattttttgtcccata 88199
>gb|AY727186.1| Trillium texanum psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1060 Score = 87.7 bits (44), Expect = 4e-14 Identities = 197/248 (79%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 228 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 287 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||| | |||| ||||||||| ||| | || || | |||||| || |||| |||| Sbjct: 288 cttgactaataaataaattcacttccttcaagcccaggttatgagtagcgtttgatgctg 347 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | ||||||||||| || || |||||||||||||| ||||| |||||||| |||||||| Sbjct: 348 cagaataaaccaatttcaaaatgggataagatgcccgataaggcatgagtgccagtatca 407 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 ||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||||||| Sbjct: 408 taagtgtgtccacataggaacgcccgcgaatctgatcaattactcttcgtgctttgaaaa 467 Query: 482 cagacata 489 |||||||| Sbjct: 468 cagacata 475
>gb|DQ006202.1| Trillium sessile voucher Wells 4879 US PsbA (psbA) gene, partial cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1172 Score = 87.7 bits (44), Expect = 4e-14 Identities = 197/248 (79%) Strand = Plus / Plus Query: 242 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 301 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 283 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 342 Query: 302 ctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcatttgcggctg 361 ||| | |||| ||||||||| |||| | || || | |||||| || |||| |||| Sbjct: 343 cttgactaataaataaattcactttcttcaagcccaggttatgagtagcgtttgatgctg 402 Query: 362 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 421 | ||| ||||||| || || |||||||||||||| ||||| |||||||| |||||||| Sbjct: 403 cagaagaaaccaatttcaaaatgggataagatgcccgataaggcatgagtgccagtatca 462 Query: 422 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 481 ||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||||||| Sbjct: 463 taagtgtgtccgcataggaacgcccgcgaatctgatcaatgactcttcgtgctttgaaaa 522 Query: 482 cagacata 489 |||||||| Sbjct: 523 cagacata 530
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 36 ttttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccg 95 ||||||||||||| ||||||| ||||| || |||| ||||||||||||| ||||| Sbjct: 1114 ttttttggttgtgaaaaccaaagggaataatgactttgtgttgtaccaagtcggaaacca 1055 Query: 96 agtggatttattttttgtcccatatt 121 |||||||||||||||||||||||||| Sbjct: 1054 agtggatttattttttgtcccatatt 1029 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||| ||||||| ||| || || ||||||||| ||||||||||||||||| Sbjct: 690 gcatttgctgctgcagaataaatcaatttaaaaatgggataacatgctcgatagggcatg 631 Query: 409 ag 410 || Sbjct: 630 ag 629
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 83.8 bits (42), Expect = 6e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 36 ttttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccg 95 ||||||||||||| ||||||| ||||| || |||| ||||||||||||| ||||| Sbjct: 81828 ttttttggttgtgaaaaccaaagggaataatgactttgtgttgtaccaagtcggaaacca 81887 Query: 96 agtggatttattttttgtcccatatt 121 |||||||||||||||||||||||||| Sbjct: 81888 agtggatttattttttgtcccatatt 81913 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||| ||||||| ||| || || ||||||||| ||||||||||||||||| Sbjct: 82252 gcatttgctgctgcagaataaatcaatttaaaaatgggataacatgctcgatagggcatg 82311 Query: 409 ag 410 || Sbjct: 82312 ag 82313
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 71 ttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 119 |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 85759 ttgggttgcaccaagtcgaaaaccgagtggatttattttttgtcccata 85807 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||||||||||||||| ||||| || |||||| |||||||||| |||||| Sbjct: 86083 gcatttgctgctgccgaataaaccaattttaaaattggataacatgctcgataaggcatg 86142 Query: 409 aggttcagtatcataacagtttcctcgtagtaacg 443 || | |||||||| | ||||| |||||| |||| Sbjct: 86143 agttcgagtatcatcattgtttcttcgtaggaacg 86177
>emb|AJ560717.1|OMI560717 Orobanche minor chloroplast rps19 gene (partial), rpl22 gene and rps3 gene (partial) Length = 1121 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||| ||||||| |||| | ||||||| ||||| || |||||||||||||||||||| | Sbjct: 712 aatatttttttgcttgtacaaaccaaagagaatgatgattttgggttgtaccaagtctga 653 Query: 91 aaccgagtggatttattttttgtcccata 119 || | |||||||||||||||||| ||||| Sbjct: 652 aaacaagtggatttattttttgtgccata 624
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||| |||||||||| ||||||| |||| || ||||| |||||||||||||| | Sbjct: 42385 aataatttcttggttgtgcaaaccaaatagaatcatgattttgagttgtaccaagtctga 42326 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| || |||| |||||||||||||||| Sbjct: 42325 aaccaagcggatgtattttttgtcccata 42297
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 71 ttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 119 |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 85988 ttgggttgcaccaagtcgaaaaccgagtggatttattttttgtcccata 86036 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 349 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 408 |||||||| ||||||||||||||||| ||||| || |||||| |||||||||| |||||| Sbjct: 86312 gcatttgctgctgccgaataaaccaattttaaaattggataacatgctcgataaggcatg 86371 Query: 409 aggttcagtatcataacagtttcctcgtagtaacg 443 || | |||||||| | ||||| |||||| |||| Sbjct: 86372 agttcgagtatcatcattgtttcttcgtaggaacg 86406
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||| |||||||||| ||||||| |||| || |||| |||||||||||||| | Sbjct: 81255 aataatttgttggttgtgcaaaccaaatagaatcatgactttgagttgtaccaagtctga 81314 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| || ||||||||||||||||||||| Sbjct: 81315 aaccaagcggatttattttttgtcccata 81343
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence Length = 128458 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 ||||||||||||||||||| ||||||| |||| || ||| | |||||||||||||| | Sbjct: 26580 aataattttttggttgtgcaaaccaaatagaatcatgatttggagttgtaccaagtctga 26639 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| | |||| |||||||||||||||| Sbjct: 26640 aaccaaacggatgtattttttgtcccata 26668
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 73.8 bits (37), Expect = 5e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 64 ggtgtttttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccatat 120 |||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 78342 ggtgattttgtgttataccaagtctaaaaccaagtgggtttattttttgtcccatat 78398
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||| ||| |||||||||| ||||||| |||| || |||| |||||||||||||| | Sbjct: 3267 aatattttgttggttgtgcaaaccaaatagaatcatgactttgagttgtaccaagtctga 3208 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| || ||||||||||||||||||||| Sbjct: 3207 aaccaagcggatttattttttgtcccata 3179
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||| ||||||| || ||||||| |||| || |||| |||||||||||||| | Sbjct: 82517 aataatttgttggttgagcaaaccaaatagaatcatgactttgagttgtaccaagtctga 82576 Query: 91 aaccgagtggatttattttttgtcccata 119 |||| || ||||||||||||||||||||| Sbjct: 82577 aaccaagcggatttattttttgtcccata 82605
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 462 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 521 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 4343410 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 4343351 Query: 522 gaacttaagtagacgatcggttgg 545 |||||||| |||| |||||||||| Sbjct: 4343350 gaacttaattagatgatcggttgg 4343327
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 462 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 521 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 83087 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 83146 Query: 522 gaacttaagtagacgatcggttgg 545 |||||||| |||| |||||||||| Sbjct: 83147 gaacttaattagatgatcggttgg 83170
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 462 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 521 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 4343525 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 4343466 Query: 522 gaacttaagtagacgatcggttgg 545 |||||||| |||| |||||||||| Sbjct: 4343465 gaacttaattagatgatcggttgg 4343442
>gb|AY962222.1| Hevea brasiliensis clone hmct52 microsatellite sequence Length = 813 Score = 67.9 bits (34), Expect = 3e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 293 tgacttcggctttagtaatgaataaattcgctttgtcgaaatccctataatgagttgcat 352 |||||||||||||| |||||| |||||| ||| || |||| || ||| ||| | |||| Sbjct: 124 tgacttcggctttactaatgattaaattgacttcgttgaaacccatattgtgactagcat 65 Query: 353 ttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgag 410 |||| ||||| ||||||| ||| || || | ||||||| |||||||||| |||||||| Sbjct: 64 ttgctgctgcagaataaatcaatttaaaaaggggataacatgctcgataaggcatgag 7
>emb|AJ315790.1|OSA315790 Oryza sativa partial BP-73 gene for SAP-like protein Length = 5896 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 462 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaac 515 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| Sbjct: 3410 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcgttgaaaac 3463
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 43 gttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccgagtggat 102 |||||||||||||| |||| | | ||||||||| ||||||||||||||| ||||||| Sbjct: 61062 gttgtgcgaaccaatgggaacgatcattttgggttacaccaagtctaaaaccaagtggat 61121 Query: 103 ttatttt 109 ||||||| Sbjct: 61122 ttatttt 61128
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 75 gttgtaccaagtctaaaaccgagtggatttattttttg 112 |||||||||||||| |||||||| |||||||||||||| Sbjct: 88602 gttgtaccaagtctgaaaccgaggggatttattttttg 88639
>gb|U92462.1|PAU92462 Picea abies ribosomal protein L16 (rpl16) partial cds, ribosomal proteins S3 (rps3), L22 (rpl22), S19 (rps19), L2 (rpl2), and L23 (rpl23) genes, complete cds, tRNA-Ile (trnI) gene, complete sequence and psbA, ndhC and ndhK pseudogenes, chloroplast genes encoding chloroplast products Length = 4723 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 69 ttttgggttgtaccaagtctaaaaccgagtggatttatttt 109 ||||||||| ||||||||||||||| |||||||||||||| Sbjct: 764 ttttgggttacaccaagtctaaaaccaagtggatttatttt 804
>gb|DQ069458.1| Ginkgo biloba ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||| |||| |||||| |||||| |||| | || ||||||||| ||||||||||| Sbjct: 88 aataatattttttttgtgcaaaccaatgggaacgatgattttgggttacaccaagtctaa 29 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| |||||||| ||| | |||||||| Sbjct: 28 aaccaagtggattaattctctgtcccat 1
>dbj|AB087471.1| Anthoceros formosae chloroplast rps3, rpl22 mRNA for ribosomal protein S3, ribosomal protein L22, complete and partial cds Length = 735 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatat 120 ||||||| |||||| |||||||| |||||||||||||||| Sbjct: 638 ccaagtcgaaaaccaagtggattaattttttgtcccatat 677
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 81 ccaagtctaaaaccgagtggatttattttttgtcccatat 120 ||||||| |||||| |||||||| |||||||||||||||| Sbjct: 102506 ccaagtcgaaaaccaagtggattaattttttgtcccatat 102545
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 31 aataattttttggttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaa 90 |||||||||||||||| || |||||| | ||||| || || || || |||||||| || Sbjct: 82268 aataattttttggttgcgcaaaccaataagaatgatgattctgagtgacaccaagtcgaa 82327 Query: 91 aaccgagtggatttattttttgtcccat 118 |||| ||||| || |||||||||||||| Sbjct: 82328 aaccaagtgggttaattttttgtcccat 82355
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 44 ttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccgagtggatt 103 ||||||||||||| | ||| || ||||| ||||||||||||| ||| || ||||||| Sbjct: 81742 ttgtgcgaaccaataagaacaatgattttgagttgtaccaagtcgaaatccaagtggatg 81801 Query: 104 tattttttgtcccata 119 ||||||||||||||| Sbjct: 81802 gattttttgtcccata 81817
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 43 gttgtgcgaaccaaaaggaatggtgtttttgggttgtaccaagtctaaaaccgagtggat 102 |||||||||||||| |||| | | ||||| ||| ||||||||||||||| ||||||| Sbjct: 62953 gttgtgcgaaccaatgggaacgctcattttgagttacaccaagtctaaaaccaagtggat 63012 Query: 103 ttatttt 109 ||||||| Sbjct: 63013 ttatttt 63019
>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10, complete sequence Length = 155106 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 ctttgtcgaaatccctataatgagttgcatttg 355 |||||| |||||||||||||||||| ||||||| Sbjct: 91188 ctttgttgaaatccctataatgagtagcatttg 91220
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 323 ctttgtcgaaatccctataatgagttgcatttg 355 |||||| |||||||||||||||||| ||||||| Sbjct: 5176685 ctttgttgaaatccctataatgagtagcatttg 5176717
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 83 aagtctaaaaccgagtggatttattttttgtccca 117 |||||||||||| | |||||||| ||||||||||| Sbjct: 102131 aagtctaaaacctaatggatttactttttgtccca 102097
>gb|AF389766.1| Uncultured bacterium clone NIW3-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtct 266 |||||||||||||||||||||| Sbjct: 192 tacgtcctcgagctcgaggtct 171
>gb|AY424708.1| Uncultured bacterium isolate DGGE band BDS17 NifH (nifH) gene, partial cds Length = 221 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtct 266 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>gb|AY424700.1| Uncultured bacterium isolate DGGE band BRS9 NifH (nifH) gene, partial cds Length = 231 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtct 266 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>gb|AY424699.1| Uncultured bacterium isolate DGGE band BDS8 NifH (nifH) gene, partial cds Length = 216 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtct 266 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 326 tgtcgaaatccctataatgagttgcatttg 355 ||||||||||| |||||||||| ||||||| Sbjct: 89462 tgtcgaaatccatataatgagtagcatttg 89433
>gb|AY386787.1| Bradyrhizobium liaoningense strain Spr3-7 nitrogenase Fe protein (nifH) gene, partial cds Length = 356 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 198 tacgtcctcgagctcgaggtc 178
>gb|AE007235.1| Sinorhizobium meliloti 1021 plasmid pSymA section 41 of 121 of the complete plasmid sequence Length = 10370 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 8029 acgtcctcgagctcgaggtct 8009
>gb|DQ480974.1| Uncultured bacterium clone RT-CLY_20 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480958.1| Uncultured bacterium clone RT-075_39 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480915.1| Uncultured bacterium clone UT-CLY_37 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480883.1| Uncultured bacterium clone UT-600_30 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AF389770.1| Uncultured bacterium clone NIS16-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389775.1| Uncultured bacterium clone NIS15-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389778.1| Uncultured bacterium clone NIS14-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389779.1| Uncultured bacterium clone NIS14-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389783.1| Uncultured bacterium clone NIS13-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389790.1| Uncultured bacterium clone NIS11-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AY424732.1| Uncultured bacterium isolate DGGE band BDS41 NifH (nifH) gene, partial cds Length = 234 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 93 acgtcctcgagctcgaggtct 73
>gb|AY424697.1| Uncultured bacterium isolate DGGE band BDS6 NifH (nifH) gene, partial cds Length = 249 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtc 74
>gb|AY221812.1| Xanthobacter flavus clone CC1080A1 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AY232321.1| Uncultured bacterium clone GN2018A1_RT dinitrogenase reductase (nifH) mRNA, partial cds Length = 324 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AY159600.1| Uncultured Sinorhizobium sp. clone nifH102 NifH (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>gb|AY159587.1| Uncultured Sinorhizobium sp. clone nifH11 NifH (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>gb|AY360976.1| Uncultured bacterium cluster O NifH (nifH) gene, partial cds Length = 317 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 90 acgtcctcgagctcgaggtct 70
>gb|AY196404.1| Uncultured nitrogen-fixing bacterium clone g1-HW13 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>gb|AC119828.9| Mus musculus chromosome 10, clone RP23-186A24, complete sequence Length = 205915 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 agggatacgtttttgtgctttgaaa 513 |||||||||||||||||| |||||| Sbjct: 176607 agggatacgtttttgtgccttgaaa 176583
>emb|AJ716367.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-54B Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716364.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-44A Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716363.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-41B Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716347.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERE-22A Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716276.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone GYMC-29B Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 114 tacgtcctcgagctcgaggtc 94
>emb|AJ716274.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone GYMC-22B Length = 357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 114 tacgtcctcgagctcgaggtc 94
>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19, complete sequence Length = 187155 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tattttttgtcccatattttt 124 ||||||||||||||||||||| Sbjct: 96103 tattttttgtcccatattttt 96123
>gb|AF484656.1| Sinorhizobium sp. xhj12s nitrogenase iron protein-like protein (nifH) gene, partial sequence Length = 447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 85 acgtcctcgagctcgaggtct 65
>gb|AF484635.1| Bradyrhizobium sp. 48b nitrogenase iron protein-like protein (nifH) gene, partial sequence Length = 447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484634.1| Bradyrhizobium sp. 48a nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484633.1| Bradyrhizobium sp. 49b nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484632.1| Bradyrhizobium sp. 40a nitrogenase iron protein-like protien (nifH) gene, partial sequence Length = 450 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484631.1| Bradyrhizobium sp. 125e nitrogenase iron protein (nifH) gene, partial cds Length = 445 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484629.1| Bradyrhizobium sp. 108a1 nitrogenase iron protein (nifH) gene, partial cds Length = 445 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484628.1| Bradyrhizobium sp. 123b nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 tacgtcctcgagctcgaggtc 265 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25, complete sequence Length = 181520 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tattttttgtcccatattttt 124 ||||||||||||||||||||| Sbjct: 138118 tattttttgtcccatattttt 138098
>dbj|AB217474.1| Sphingomonas azotifigens nifH gene for dinitrogenase reductase subunit, partial cds Length = 726 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 192 acgtcctcgagctcgaggtct 172
>dbj|AB182914.1| Pleomorphomonas oryzae nifH gene for Fe protein of nitrogenase-nifH, partial cds, strain:F-4 Length = 418 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 203 acgtcctcgagctcgaggtct 183
>gb|DQ413016.1| Sinorhizobium meliloti isolate RP254 NifH (nifH) gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 165 acgtcctcgagctcgaggtct 145
>gb|DQ426077.1| Uncultured bacterium clone 25.101 NifH-like (nifH) gene, partial sequence Length = 331 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>gb|DQ425401.1| Uncultured bacterium clone 4.77 NifH-like (nifH) gene, partial sequence Length = 239 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 98 acgtcctcgagctcgaggtct 78
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 1704617 acgtcctcgagctcgaggtct 1704637
>dbj|AB208384.1| Uncultured nitrogen-fixing bacterium mRNA for dinitrogenase reductase, partial cds, clone: NE5L-ROR32 Length = 390 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 203 acgtcctcgagctcgaggtct 183
>gb|AF296349.1|AF296349 Xanthobacter autotrophicus clone p11xa dinitrogenase reductase (nifH) gene, partial cds Length = 403 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 177 acgtcctcgagctcgaggtct 157
>gb|AF296348.1|AF296348 Xanthobacter autotrophicus clone p10xa dinitrogenase reductase (nifH) gene, partial cds Length = 403 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 177 acgtcctcgagctcgaggtct 157
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 90 aaaccgagtggatttattttttgtcccat 118 ||||||| |||||||| |||||||||||| Sbjct: 765377 aaaccgattggatttactttttgtcccat 765349
>gb|AY795615.1| Uncultured bacterium clone nifH.Pucci.S8 dinitrogenase reductase (nifH) gene, partial cds Length = 355 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AC091522.23| Mus musculus strain C57BL/6J chromosome 10 clone rp23-199g2, complete sequence Length = 214798 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 agggatacgtttttgtgctttgaaa 513 |||||||||||||||||| |||||| Sbjct: 27852 agggatacgtttttgtgccttgaaa 27828
>gb|AY724114.2| Uncultured bacterium clone DUNnif031 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724113.2| Uncultured bacterium clone DUNnif030 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724112.2| Uncultured bacterium clone DUNnif029 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724109.2| Uncultured bacterium clone DUNnif026 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724102.2| Uncultured bacterium clone DUNnif021 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724101.2| Uncultured bacterium clone DUNnif020 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY934877.1| Sinorhizobium sp. CCBAU 53044B nitrogenase reductase (nifH) gene, partial cds Length = 755 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 174 acgtcctcgagctcgaggtct 154
>gb|AF115283.1|AF115283 Leptospira interrogans S10-spc-alpha locus, complete sequence Length = 20709 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 90 aaaccgagtggatttattttttgtcccat 118 ||||||| |||||||| |||||||||||| Sbjct: 8933 aaaccgattggatttactttttgtcccat 8905
>gb|AY912768.1| Uncultured forest soil bacterium clone DUNnif377 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912583.1| Uncultured forest soil bacterium clone DUNnif192 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912577.1| Uncultured forest soil bacterium clone DUNnif186 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912569.1| Uncultured forest soil bacterium clone DUNnif178 dinitrogenase reductase (nifH) gene, partial cds Length = 353 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 172 acgtcctcgagctcgaggtct 152
>gb|AY912555.1| Uncultured forest soil bacterium clone DUNnif164 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtct 266 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>emb|CR792419.10| Zebrafish DNA sequence from clone DKEY-11A2 in linkage group 3, complete sequence Length = 61995 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tattttttgtcccatattttt 124 ||||||||||||||||||||| Sbjct: 5909 tattttttgtcccatattttt 5929
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 90 aaaccgagtggatttattttttgtcccat 118 ||||||| |||||||| |||||||||||| Sbjct: 3466038 aaaccgattggatttactttttgtcccat 3466066
>gb|AY829685.1| Uncultured bacterium clone TF25011 nitrogenase iron protein (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ224696.1| Uncultured bacterium clone nif1004424L92 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AY787583.1| Uncultured bacterium clone 52_Z65C nitrogenase iron protein (nifH) gene, partial cds Length = 359 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtc 94
>gb|DQ059362.1| Uncultured bacterium clone 1C-4 dinitrogenase reductase (nifH) gene, partial cds Length = 383 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 209 acgtcctcgagctcgaggtc 190
>gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete sequence Length = 111889 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 tattttttgtcccatatttttcta 127 ||||||||||||||||| |||||| Sbjct: 80643 tattttttgtcccatatgtttcta 80666
>gb|DQ481381.1| Uncultured microorganism clone 19390A6 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481379.1| Uncultured microorganism clone 19390A3 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481376.1| Uncultured microorganism clone 19390A15 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481374.1| Uncultured microorganism clone 19390A13 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481034.1| Uncultured bacterium clone LT-CLY_21 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ480917.1| Uncultured bacterium clone UT-CLY_45 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 attttttgtcccatattttt 124 |||||||||||||||||||| Sbjct: 26139 attttttgtcccatattttt 26158
>gb|AF389713.1| Uncultured bacterium clone SIW2-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtc 172
>gb|AF315428.1| Uncultured temperate forest soil bacterium CF018a dinitrogenase reductase (nifH) gene, partial cds Length = 397 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtc 152
>gb|AF035492.1| Uncultured bacterium NR1608 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF035505.1| Uncultured bacterium NR1621 dinitrogenase reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AY581120.1| Sitobion avenae cell division cycle protein 42 (cdc42) mRNA, complete cds Length = 661 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 tgtgcgaaccaaaaggaatggtgttttt 72 ||||| |||||| ||||||||||||||| Sbjct: 395 tgtgccaaccaacaggaatggtgttttt 368
>gb|AY574638.1| Rhopalosiphum padi Rho family small GTP binding protein cdc42 mRNA, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 tgtgcgaaccaaaaggaatggtgttttt 72 ||||| |||||| ||||||||||||||| Sbjct: 541 tgtgccaaccaacaggaatggtgttttt 514
>gb|AY221811.1| Sinorhizobium meliloti clone CC1079A1 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 cgtcctcgagctcgaggtct 266 |||||||||||||||||||| Sbjct: 94 cgtcctcgagctcgaggtct 75
>gb|AY196461.1| Uncultured nitrogen-fixing bacterium clone f1-PA3 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196457.1| Uncultured nitrogen-fixing bacterium clone f1-HW9 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196456.1| Uncultured nitrogen-fixing bacterium clone f1-HW8 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196454.1| Uncultured nitrogen-fixing bacterium clone f1-HW5 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196452.1| Uncultured nitrogen-fixing bacterium clone f1-HW3 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196451.1| Uncultured nitrogen-fixing bacterium clone f1-HW2 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196450.1| Uncultured nitrogen-fixing bacterium clone f1-HW10 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196422.1| Uncultured nitrogen-fixing bacterium clone g1-HA1 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY458644.1| Uncultured bacterium 562 clone EBAC000-45B06 genomic sequence Length = 61185 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 79 taccaagtctaaaaccgagtggatttattttttgtcccat 118 |||| ||||||||||| |||||||| |||||||||||| Sbjct: 40344 tacctagtctaaaacctgttggatttactttttgtcccat 40305
>emb|CR762383.11| Zebrafish DNA sequence from clone DKEY-28M7 in linkage group 6, complete sequence Length = 101572 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ttgtcccatatttttctattctat 133 |||||||||||||| ||||||||| Sbjct: 63262 ttgtcccatattttactattctat 63285
>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8, complete sequence Length = 192705 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tttagatttctttactatat 199 |||||||||||||||||||| Sbjct: 139207 tttagatttctttactatat 139226
>gb|AY372454.1| Uncultured marine gamma proteobacterium EB000-45B06 fosmid clone Length = 61173 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 79 taccaagtctaaaaccgagtggatttattttttgtcccat 118 |||| ||||||||||| |||||||| |||||||||||| Sbjct: 40343 tacctagtctaaaacctgttggatttactttttgtcccat 40304
>emb|AL356374.13| Human DNA sequence from clone RP11-454P17 on chromosome 6, complete sequence Length = 21183 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 gatttattttttgtcccatatttt 123 ||||||||||||| |||||||||| Sbjct: 10235 gatttattttttgacccatatttt 10212
>emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E19 on chromosome 6q23.2-24.2, complete sequence Length = 110885 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 aactctttgtgctttgaaaa 481 |||||||||||||||||||| Sbjct: 86786 aactctttgtgctttgaaaa 86767
>emb|Z47547.1|MTCCGNME Chondrus crispus complete mitochondrial genome Length = 25836 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 75 gttgtaccaagtctaaaaccgagtggatttattttttgtcccat 118 ||||| ||||||||||||| | |||||| ||||||||| |||| Sbjct: 6346 gttgttccaagtctaaaacttattggattaattttttgtgccat 6303
>gb|AC149070.3| Xenopus tropicalis clone ISB1-185H2, complete sequence Length = 99046 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tttctttactatatttagtacaat 209 ||||||||||||||| |||||||| Sbjct: 9200 tttctttactatattgagtacaat 9223
>dbj|AB188119.1| Rubrivivax gelatinosus nifH gene for iron protein of nitrogenase, partial cds, strain:IAM 14808 Length = 416 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 182 acgtcctcgagctcgaggtc 163
>gb|DQ398434.1| Uncultured cyanobacterium clone FALLSnif02D05 dinitrogen reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ398411.1| Uncultured cyanobacterium clone FALLSnif02A03 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ413230.1| Acyrthosiphon pisum isolate WHAP0364 putative Rho family small GTP binding protein cdc42 mRNA, complete cds Length = 576 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 tgtgcgaaccaaaaggaatggtgttttt 72 ||||| |||||| ||||||||||||||| Sbjct: 345 tgtgccaaccaacaggaatggtgttttt 318
>gb|DQ426402.1| Uncultured bacterium clone 29.170 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426393.1| Uncultured bacterium clone 29.160 NifH-like (nifH) gene, partial sequence Length = 339 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|DQ426380.1| Uncultured bacterium clone 29.145 NifH-like (nifH) gene, partial sequence Length = 336 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtc 94
>gb|DQ426374.1| Uncultured bacterium clone 29.138 NifH-like (nifH) gene, partial sequence Length = 330 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 107 acgtcctcgagctcgaggtc 88
>gb|DQ426367.1| Uncultured bacterium clone 29.130 NifH-like (nifH) gene, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 110 acgtcctcgagctcgaggtc 91
>gb|DQ426354.1| Uncultured bacterium clone 29.116 NifH-like (nifH) gene, partial sequence Length = 288 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 65 acgtcctcgagctcgaggtc 46
>gb|DQ426352.1| Uncultured bacterium clone 29.114 NifH-like (nifH) gene, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 110 acgtcctcgagctcgaggtc 91
>gb|DQ426346.1| Uncultured bacterium clone 29.105 NifH-like (nifH) gene, partial sequence Length = 338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 114 acgtcctcgagctcgaggtc 95
>gb|DQ426320.1| Uncultured bacterium clone 29.76 NifH-like (nifH) gene, partial sequence Length = 318 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426319.1| Uncultured bacterium clone 29.75 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426309.1| Uncultured bacterium clone 29.65 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426297.1| Uncultured bacterium clone 29.53 NifH-like (nifH) gene, partial sequence Length = 312 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426294.1| Uncultured bacterium clone 29.48 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426289.1| Uncultured bacterium clone 29.43 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426283.1| Uncultured bacterium clone 29.36 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426270.1| Uncultured bacterium clone 29.12 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ425739.1| Uncultured bacterium clone 7.142 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ140599.1| Uncultured bacterium clone nif1003301M15 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|U97122.1|U97122 Azoarcus tolulyticus nitrogenase iron protein (nifH) gene, partial cds Length = 336 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 179 acgtcctcgagctcgaggtc 160
>gb|AF216931.1|AF216931 Unidentified nitrogen-fixing bacteria clone F2 dinitrogenase reductase (nifH) gene, partial cds Length = 417 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtc 172
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ttgtcccatatttttctatt 129 |||||||||||||||||||| Sbjct: 111779 ttgtcccatatttttctatt 111798
>emb|AL954710.27| Mouse DNA sequence from clone RP23-275J10 on chromosome 4, complete sequence Length = 202551 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 gtgctttgaaaacagacataggga 493 |||||||||||||| ||||||||| Sbjct: 115047 gtgctttgaaaacaaacataggga 115024
>gb|AF046840.1|AF046840 Marine proteobacterium 'Sippewissett 2-21' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF046836.1|AF046836 Marine proteobacterium 'Bird Shoal 8-1' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF046830.1|AF046830 Marine proteobacterium 'Bird Shoal 1-2' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acgtcctcgagctcgaggtc 265 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>emb|CT010450.15| Mouse DNA sequence from clone RP23-443B9 on chromosome 12, complete sequence Length = 193155 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ctatatttagtacaattgtt 213 |||||||||||||||||||| Sbjct: 36287 ctatatttagtacaattgtt 36268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,279,761 Number of Sequences: 3902068 Number of extensions: 5279761 Number of successful extensions: 91507 Number of sequences better than 10.0: 236 Number of HSP's better than 10.0 without gapping: 239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90374 Number of HSP's gapped (non-prelim): 1071 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
