ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197394.1| Oryza sativa (japonica cultivar-group) hypothet... 109 1e-20
2gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 109 1e-20
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
5dbj|AK103797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6gb|AY110488.1| Zea mays CL39475_1 mRNA sequence 72 2e-09
7gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, comple... 44 0.55
8gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 44 0.55
9gb|AC124471.4| Mus musculus BAC clone RP24-79D7 from 12, complet... 44 0.55
10gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 44 0.55
11ref|XM_658266.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.2
12gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, co... 42 2.2
13gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 2.2
14gb|AC114554.8| Mus musculus chromosome 5, clone RP23-414E14, com... 40 8.6
15gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, co... 40 8.6
16gb|AC165091.3| Mus musculus BAC clone RP23-25M19 from chromosome... 40 8.6
17gb|AC161762.4| Mus musculus BAC clone RP23-371K18 from chromosom... 40 8.6
18ref|XM_813200.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.6
19gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome... 40 8.6
20ref|XM_652194.1| Entamoeba histolytica HM-1:IMSS Viral A-type in... 40 8.6
21gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence 40 8.6
22emb|AL133352.12| Human DNA sequence from clone RP11-411B6 on chr... 40 8.6
23gb|AC102264.26| Mus musculus chromosome 7, clone RP24-230F10, co... 40 8.6
24gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 40 8.6
25gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, com... 40 8.6
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
27gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, co... 40 8.6
28gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, co... 40 8.6
29gb|AF489447.1| Chimpanzee papillomavirus isolate CAA11 major cap... 40 8.6
30dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
31gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing... 40 8.6
32gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell P... 40 8.6
33emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-9... 40 8.6
34emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 40 8.6 
>ref|NM_197394.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0018B10.17), mRNA
          Length = 657

 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Minus

                                                                       
Query: 280 tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
           |||| |||||| |||| |||||||||||||||||||| |||||| || |||| |||  ||
Sbjct: 584 tccaactcctccagagatgctttctgcacctcaacgaggcgagctaaagacgaccatgcc 525

                                                                       
Query: 340 tcacttggctgctcatgagcccagcatgtcatgaagaacagcttcctaccggcggcatgg 399
           ||| |||| ||||||||| ||||||||||||||||| ||| ||||||| | |||||| | 
Sbjct: 524 tcatttggttgctcatgaacccagcatgtcatgaagtacaacttcctatctgcggcacga 465

                  
Query: 400 agctttt 406
           |||||||
Sbjct: 464 agctttt 458



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                       
Query: 472 atgagcctgtggaagtcacacaatgcacaaaccactgcattgcctcctagggagaggatt 531
           ||||||||| |||||||||| |  |||||||| |  |||||||||||||  | ||| |  
Sbjct: 392 atgagcctgcggaagtcacagagggcacaaacaagcgcattgcctcctaacgtgagaagg 333

                                                             
Query: 532 ctgacgatatcatccacaagtccaatagcaaacctgaaacctccggtgtg 581
           |||| |||||||||||| ||  | ||||||||||||||||||||||||||
Sbjct: 332 ctgatgatatcatccacgagagctatagcaaacctgaaacctccggtgtg 283



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 213 ctcctcaataagaaccttggactgcgggttgttctttctacc 254
           ||||||||||||||||||||| || |  | ||||||||||||
Sbjct: 651 ctcctcaataagaaccttggattgggcatcgttctttctacc 610
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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
             sequence
          Length = 135789

 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                         
Query: 280   tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
             |||| |||||| |||| |||||||||||||||||||| |||||| || |||| |||  ||
Sbjct: 78981 tccaactcctccagagatgctttctgcacctcaacgaggcgagctaaagacgaccatgcc 79040

                                                                         
Query: 340   tcacttggctgctcatgagcccagcatgtcatgaagaacagcttcctaccggcggcatgg 399
             ||| |||| ||||||||| ||||||||||||||||| ||| ||||||| | |||||| | 
Sbjct: 79041 tcatttggttgctcatgaacccagcatgtcatgaagtacaacttcctatctgcggcacga 79100

                    
Query: 400   agctttt 406
             |||||||
Sbjct: 79101 agctttt 79107



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                         
Query: 472   atgagcctgtggaagtcacacaatgcacaaaccactgcattgcctcctagggagaggatt 531
             ||||||||| |||||||||| |  |||||||| |  |||||||||||||  | ||| |  
Sbjct: 79173 atgagcctgcggaagtcacagagggcacaaacaagcgcattgcctcctaacgtgagaagg 79232

                                                                         
Query: 532   ctgacgatatcatccacaagtccaatagcaaacctgaaacctccggtgtgtcggtaaaca 591
             |||| |||||||||||| ||  | |||||||||||||||||||||||||| | |||| | 
Sbjct: 79233 ctgatgatatcatccacgagagctatagcaaacctgaaacctccggtgtgcctgtaagcc 79292

                                                  
Query: 592   ggagagcatgtctcctctatgcacgtcgtgagcgctt 628
             || ||||||||||||||||| || | |||||| ||||
Sbjct: 79293 ggtgagcatgtctcctctatacatgccgtgagggctt 79329



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 213   ctcctcaataagaaccttggactgcgggttgttctttctacc 254
             ||||||||||||||||||||| || |  | ||||||||||||
Sbjct: 78914 ctcctcaataagaaccttggattgggcatcgttctttctacc 78955
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 280      tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
                |||| |||||| |||| |||||||||||||||||||| |||||| || |||| |||  ||
Sbjct: 19621790 tccaactcctccagagatgctttctgcacctcaacgaggcgagctaaagacgaccatgcc 19621849

                                                                            
Query: 340      tcacttggctgctcatgagcccagcatgtcatgaagaacagcttcctaccggcggcatgg 399
                ||| |||| ||||||||| ||||||||||||||||| ||| ||||||| | |||||| | 
Sbjct: 19621850 tcatttggttgctcatgaacccagcatgtcatgaagtacaacttcctatctgcggcacga 19621909

                       
Query: 400      agctttt 406
                |||||||
Sbjct: 19621910 agctttt 19621916



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                            
Query: 472      atgagcctgtggaagtcacacaatgcacaaaccactgcattgcctcctagggagaggatt 531
                ||||||||| |||||||||| |  |||||||| |  |||||||||||||  | ||| |  
Sbjct: 19621982 atgagcctgcggaagtcacagagggcacaaacaagcgcattgcctcctaacgtgagaagg 19622041

                                                                            
Query: 532      ctgacgatatcatccacaagtccaatagcaaacctgaaacctccggtgtgtcggtaaaca 591
                |||| |||||||||||| ||  | |||||||||||||||||||||||||| | |||| | 
Sbjct: 19622042 ctgatgatatcatccacgagagctatagcaaacctgaaacctccggtgtgcctgtaagcc 19622101

                                                     
Query: 592      ggagagcatgtctcctctatgcacgtcgtgagcgctt 628
                || ||||||||||||||||| || | |||||| ||||
Sbjct: 19622102 ggtgagcatgtctcctctatacatgccgtgagggctt 19622138



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 213      ctcctcaataagaaccttggactgcgggttgttctttctacc 254
                ||||||||||||||||||||| || |  | ||||||||||||
Sbjct: 19621723 ctcctcaataagaaccttggattgggcatcgttctttctacc 19621764
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 280      tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
                |||| |||||| |||| |||||||||||||||||||| |||||| || |||| |||  ||
Sbjct: 19633066 tccaactcctccagagatgctttctgcacctcaacgaggcgagctaaagacgaccatgcc 19633125

                                                                            
Query: 340      tcacttggctgctcatgagcccagcatgtcatgaagaacagcttcctaccggcggcatgg 399
                ||| |||| ||||||||| ||||||||||||||||| ||| ||||||| | |||||| | 
Sbjct: 19633126 tcatttggttgctcatgaacccagcatgtcatgaagtacaacttcctatctgcggcacga 19633185

                       
Query: 400      agctttt 406
                |||||||
Sbjct: 19633186 agctttt 19633192



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                            
Query: 472      atgagcctgtggaagtcacacaatgcacaaaccactgcattgcctcctagggagaggatt 531
                ||||||||| |||||||||| |  |||||||| |  |||||||||||||  | ||| |  
Sbjct: 19633258 atgagcctgcggaagtcacagagggcacaaacaagcgcattgcctcctaacgtgagaagg 19633317

                                                                            
Query: 532      ctgacgatatcatccacaagtccaatagcaaacctgaaacctccggtgtgtcggtaaaca 591
                |||| |||||||||||| ||  | |||||||||||||||||||||||||| | |||| | 
Sbjct: 19633318 ctgatgatatcatccacgagagctatagcaaacctgaaacctccggtgtgcctgtaagcc 19633377

                                                     
Query: 592      ggagagcatgtctcctctatgcacgtcgtgagcgctt 628
                || ||||||||||||||||| || | |||||| ||||
Sbjct: 19633378 ggtgagcatgtctcctctatacatgccgtgagggctt 19633414



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 213      ctcctcaataagaaccttggactgcgggttgttctttctacc 254
                ||||||||||||||||||||| || |  | ||||||||||||
Sbjct: 19632999 ctcctcaataagaaccttggattgggcatcgttctttctacc 19633040
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>dbj|AK103797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145P15, full
            insert sequence
          Length = 1568

 Score =  101 bits (51), Expect = 3e-18
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 280  tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
            |||| |||||| |||| ||||| |||||||||||||| |||||| || |||| |||  ||
Sbjct: 1288 tccaactcctccagagatgcttcctgcacctcaacgaggcgagctaaagacgaccatgcc 1229

                                                                        
Query: 340  tcacttggctgctcatgagcccagcatgtcatgaagaacagcttcctaccggcggcatgg 399
            ||| |||| ||||||||| ||||||||||||||||| ||| ||||||| | |||||| | 
Sbjct: 1228 tcatttggttgctcatgaacccagcatgtcatgaagtacaacttcctatctgcggcacga 1169

                   
Query: 400  agctttt 406
            |||||||
Sbjct: 1168 agctttt 1162



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                        
Query: 472  atgagcctgtggaagtcacacaatgcacaaaccactgcattgcctcctagggagaggatt 531
            ||||||||| |||||||||| |  |||||||| |  |||||||||||||  | ||| |  
Sbjct: 1096 atgagcctgcggaagtcacagagggcacaaacaagcgcattgcctcctaacgtgagaagg 1037

                                                                        
Query: 532  ctgacgatatcatccacaagtccaatagcaaacctgaaacctccggtgtgtcggtaaaca 591
            |||| |||||||||||| ||  | |||||||||||||||||||||||||| | |||| | 
Sbjct: 1036 ctgatgatatcatccacgagagctatagcaaacctgaaacctccggtgtgcctgtaagcc 977

                                                 
Query: 592  ggagagcatgtctcctctatgcacgtcgtgagcgctt 628
            || ||||||||||||||||| || | |||||| ||||
Sbjct: 976  ggtgagcatgtctcctctatacatgccgtgagggctt 940



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 213  ctcctcaataagaaccttggactgcgggttgttctttctacc 254
            ||||||||||||||||||||| || |  | ||||||||||||
Sbjct: 1355 ctcctcaataagaaccttggattgggcatcgttctttctacc 1314
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>gb|AY110488.1| Zea mays CL39475_1 mRNA sequence
          Length = 870

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                       
Query: 280 tccagctcctcaagagctgctttctgcacctcaacgatgcgagccaacgacggccacacc 339
           |||| |||||| | || ||||||||||||||  |||||| |||| || || |||||| ||
Sbjct: 653 tccaactcctccatagatgctttctgcacctggacgatgtgagctaaagatggccacgcc 594

                                                           
Query: 340 tcacttggctgctcatgagcccagcatgtcatgaagaacagcttccta 387
           |||  ||||||||||||  |||| || ||||||||||| |||||||||
Sbjct: 593 tcatctggctgctcatggacccaacaagtcatgaagaatagcttccta 546



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 537 gatatcatccacaagtccaatagcaaacctgaaacctccggtgtgtcggtaaacaggaga 596
           |||||| ||||| ||||||||||||||||||||||| || || || | |||| | || ||
Sbjct: 396 gatatcgtccacgagtccaatagcaaacctgaaaccaccagtatgcctgtaagctggtga 337

                             
Query: 597 gcatgtctcctctatgca 614
           |||||||||||| |||||
Sbjct: 336 gcatgtctcctcgatgca 319
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>gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, complete sequence
          Length = 103836

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 242   tgttctttctacctgccttcct 263
             ||||||||||||||||||||||
Sbjct: 24405 tgttctttctacctgccttcct 24426
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>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 204318

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 106    tgaaggtgaagaaaacaaggat 127
              ||||||||||||||||||||||
Sbjct: 199129 tgaaggtgaagaaaacaaggat 199150
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>gb|AC124471.4| Mus musculus BAC clone RP24-79D7 from 12, complete sequence
          Length = 179503

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 106    tgaaggtgaagaaaacaaggat 127
              ||||||||||||||||||||||
Sbjct: 171033 tgaaggtgaagaaaacaaggat 171012
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>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 106    tgaaggtgaagaaaacaaggat 127
              ||||||||||||||||||||||
Sbjct: 167752 tgaaggtgaagaaaacaaggat 167773
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>ref|XM_658266.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5754.2), mRNA
          Length = 1680

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 521  gggagaggattctgacgatatcatccaca 549
            ||||||||||||||| |||||| ||||||
Sbjct: 1525 gggagaggattctgaggatatcctccaca 1497
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>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence
          Length = 217253

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   tgagcctgtggaagtcacaca 493
             |||||||||||||||||||||
Sbjct: 42269 tgagcctgtggaagtcacaca 42249
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>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone
              KBrH020D15, complete sequence
          Length = 143633

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     taaactgtcacatcttccaaa 73
              |||||||||||||||||||||
Sbjct: 114777 taaactgtcacatcttccaaa 114797
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>gb|AC114554.8| Mus musculus chromosome 5, clone RP23-414E14, complete sequence
          Length = 204467

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    cagctcctcaagagctgctttctg 305
              |||| |||||||||||||||||||
Sbjct: 141377 cagcccctcaagagctgctttctg 141354
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>gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, complete sequence
          Length = 210235

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ttctttctacctgccttcct 263
              ||||||||||||||||||||
Sbjct: 123236 ttctttctacctgccttcct 123255
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>gb|AC165091.3| Mus musculus BAC clone RP23-25M19 from chromosome 17, complete sequence
          Length = 198085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    atgagcctgtggaagtcaca 491
              ||||||||||||||||||||
Sbjct: 166720 atgagcctgtggaagtcaca 166701
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>gb|AC161762.4| Mus musculus BAC clone RP23-371K18 from chromosome 7, complete sequence
          Length = 207870

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   gttctttctacctgccttcctcag 266
             |||||| |||||||||||||||||
Sbjct: 60681 gttcttcctacctgccttcctcag 60704
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>ref|XM_813200.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509437.80) partial mRNA
          Length = 1239

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 caacgacggccacacctcac 343
           ||||||||||||||||||||
Sbjct: 406 caacgacggccacacctcac 425
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>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete sequence
          Length = 185494

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     catcttccaaagatgacaat 82
              ||||||||||||||||||||
Sbjct: 109257 catcttccaaagatgacaat 109276
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>ref|XM_652194.1| Entamoeba histolytica HM-1:IMSS Viral A-type inclusion protein repeat
            (3.t00034) partial mRNA
          Length = 4164

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 111  gtgaagaaaacaaggatcaaatga 134
            |||||||||||||| |||||||||
Sbjct: 2024 gtgaagaaaacaagaatcaaatga 2047
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>gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    gaaggtgaagaaaacaaggatcaa 130
              |||| |||||||||||||||||||
Sbjct: 139469 gaagttgaagaaaacaaggatcaa 139446
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>emb|AL133352.12| Human DNA sequence from clone RP11-411B6 on chromosome 10 Contains the
             3' end of the WNT8B gene for wingless-type MMTV
             integration site family member 8B, the gene for secretory
             pathway component Sec31B-1 (SEC31B-1), the NDUFB8 gene for
             NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8,
             19kDa, the HIF1AN gene for hypoxia-inducible factor 1,
             alpha subunit inhibitor and four CpG islands, complete
             sequence
          Length = 157808

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   cctcacttggctgctcatgagccc 361
             |||||||||||| |||||||||||
Sbjct: 52928 cctcacttggctcctcatgagccc 52951
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>gb|AC102264.26| Mus musculus chromosome 7, clone RP24-230F10, complete sequence
          Length = 175968

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   gttctttctacctgccttcctcag 266
             |||||| |||||||||||||||||
Sbjct: 91360 gttcttcctacctgccttcctcag 91383
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>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   cttgaaggtgaagaaaacaaggat 127
             |||||| |||||||||||||||||
Sbjct: 85717 cttgaatgtgaagaaaacaaggat 85694
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>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence
          Length = 211621

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 282  cagctcctcaagagctgctttctg 305
            |||| |||||||||||||||||||
Sbjct: 1509 cagcccctcaagagctgctttctg 1486
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 75       atgacaatttatacatttaagcca 98
                |||| |||||||||||||||||||
Sbjct: 20181892 atgaaaatttatacatttaagcca 20181915
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>gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, complete sequence
          Length = 198848

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cagcttggatgagcctgtgg 483
              ||||||||||||||||||||
Sbjct: 138563 cagcttggatgagcctgtgg 138582
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>gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, complete sequence
          Length = 179084

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   catggagctttttgaagctc 414
             ||||||||||||||||||||
Sbjct: 73981 catggagctttttgaagctc 73962
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>gb|AF489447.1| Chimpanzee papillomavirus isolate CAA11 major capsid protein (L1)
           gene, partial cds
          Length = 437

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  cacatcttccaaagatgaca 80
           ||||||||||||||||||||
Sbjct: 260 cacatcttccaaagatgaca 279
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0047P18
          Length = 169128

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    atgacaatttatacatttaagcca 98
             |||| |||||||||||||||||||
Sbjct: 75392 atgaaaatttatacatttaagcca 75415
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>gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing gene for type 2 iodothyronine
              deiodinase (DIO2) gene, complete CDS, complete sequence
          Length = 154796

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     caaagatgacaatttataca 89
              ||||||||||||||||||||
Sbjct: 122836 caaagatgacaatttataca 122855
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>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159217

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    ccaaagatgacaatttatacattt 92
             |||| |||||||||||||||||||
Sbjct: 38604 ccaatgatgacaatttatacattt 38627
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>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168677

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    caaagatgacaatttataca 89
             ||||||||||||||||||||
Sbjct: 52316 caaagatgacaatttataca 52297
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
              sequence
          Length = 200375

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    gaaggtgaagaaaacaaggatcaa 130
              |||| |||||||||||||||||||
Sbjct: 196931 gaagttgaagaaaacaaggatcaa 196908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,825,464
Number of Sequences: 3902068
Number of extensions: 5825464
Number of successful extensions: 102065
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101910
Number of HSP's gapped (non-prelim): 150
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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