ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
2dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mR... 101 2e-18
5dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
7gb|AY105847.1| Zea mays PCO081230 mRNA sequence 64 3e-07
8gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 46 0.080
9ref|XM_464548.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
11dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
12emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 42 1.2
13emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364 42 1.2
14ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.2
15ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.9
16ref|XM_482186.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
17gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat rece... 40 4.9
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
19gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.9
20emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025... 40 4.9
21gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 4.9
22emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in... 40 4.9
23gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
24dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.9
25gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.9
26gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157... 40 4.9
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.9
31gb|AC063945.16| Homo sapiens 12 BAC RP11-417A9 (Roswell Park Can... 40 4.9
32gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Can... 40 4.9
33dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
34dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
35dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
36dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mR... 40 4.9
37dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
38dbj|AK111680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
39dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
40dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
41emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.9
42gb|AF031882.1|AF031882 Euprymna morsei internal transcribed spac... 40 4.9
43gb|AF031881.1|AF031881 Euprymna scolopes internal transcribed sp... 40 4.9 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                            
Query: 291      gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
                ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 10790685 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 10790626

                           
Query: 351      ttggtcttggt 361
                ||| |||||||
Sbjct: 10790625 ttgctcttggt 10790615



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 189      catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
                ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 10790781 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 10790722

                              
Query: 249      gcgacgagcacggc 262
                ||||||||| ||||
Sbjct: 10790721 gcgacgagcgcggc 10790708



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                                
Query: 100      gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
                |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 10790860 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 10790815
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                         
Query: 291   gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
             ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 14408 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 14349

                        
Query: 351   ttggtcttggt 361
             ||| |||||||
Sbjct: 14348 ttgctcttggt 14338



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 189   catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
             ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 14504 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 14445

                           
Query: 249   gcgacgagcacggc 262
             ||||||||| ||||
Sbjct: 14444 gcgacgagcgcggc 14431



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                             
Query: 100   gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
             |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 14583 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 14538
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                          
Query: 291    gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
              ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 127303 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 127244

                         
Query: 351    ttggtcttggt 361
              ||| |||||||
Sbjct: 127243 ttgctcttggt 127233



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 189    catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
              ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 127399 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 127340

                            
Query: 249    gcgacgagcacggc 262
              ||||||||| ||||
Sbjct: 127339 gcgacgagcgcggc 127326



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                              
Query: 100    gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
              |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 127478 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 127433
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>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD
            interacting protein 103, complete cds
          Length = 2366

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 291  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
            ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1885 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1826

                       
Query: 351  ttggtcttggt 361
            ||| |||||||
Sbjct: 1825 ttgctcttggt 1815



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 189  catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
            ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 1981 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 1922

                          
Query: 249  gcgacgagcacggc 262
            ||||||||| ||||
Sbjct: 1921 gcgacgagcgcggc 1908



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 100  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 2060 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2015
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>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full
            insert sequence
          Length = 2295

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 291  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
            ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1887 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1828

                       
Query: 351  ttggtcttggt 361
            ||| |||||||
Sbjct: 1827 ttgctcttggt 1817



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 189  catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
            ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 1983 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 1924

                          
Query: 249  gcgacgagcacggc 262
            ||||||||| ||||
Sbjct: 1923 gcgacgagcgcggc 1910



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 100  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 2062 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2017
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>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full
           insert sequence
          Length = 1352

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                       
Query: 291 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 350
           ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 963 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 904

                      
Query: 351 ttggtcttggt 361
           ||| |||||||
Sbjct: 903 ttgctcttggt 893



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 189  catcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagg 248
            ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | || ||||||
Sbjct: 1059 catcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacggcaagcagg 1000

                          
Query: 249  gcgacgagcacggc 262
            ||||||||| ||||
Sbjct: 999  gcgacgagcgcggc 986



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 100  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 147
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 1138 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 1093
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>gb|AY105847.1| Zea mays PCO081230 mRNA sequence
          Length = 1699

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 191  tcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagggc 250
            |||||||||||   |||| ||| |||||||||||||||| |||||| ||||||| |||||
Sbjct: 1370 tcagttgctggcattcgctgggaggtagtactggtagtatcccagcaccgcgaggagggc 1311

                        
Query: 251  gacgagcacggc 262
             || ||||||||
Sbjct: 1310 aaccagcacggc 1299



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 291  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctt 337
            |||||||||| ||| ||||| || |||||||||||||||||||||||
Sbjct: 1276 gcccatgaccagtaggactgcgccttcttcctcttcaggatcgcctt 1230



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  tctcacctgcaaaattggtct 141
            |||||||||||||||||||||
Sbjct: 1440 tctcacctgcaaaattggtct 1420
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 341     cagcggggccttggtcttggtga 363
               |||||||||||||||||||||||
Sbjct: 2663170 cagcggggccttggtcttggtga 2663148
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>ref|XM_464548.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 846

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 248 ggcgacgagcacggccacggcg 269
           ||||||||||||||||||||||
Sbjct: 339 ggcgacgagcacggccacggcg 318
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 248     ggcgacgagcacggccacggcg 269
               ||||||||||||||||||||||
Sbjct: 5819104 ggcgacgagcacggccacggcg 5819125



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      agcttctccagtcttttcag 83
               ||||||||||||||||||||
Sbjct: 2940472 agcttctccagtcttttcag 2940491
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 248   ggcgacgagcacggccacggcg 269
             ||||||||||||||||||||||
Sbjct: 48906 ggcgacgagcacggccacggcg 48927
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   agcgccgcgagcagggcgacg 254
             |||||||||||||||||||||
Sbjct: 14231 agcgccgcgagcagggcgacg 14211
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>emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364
          Length = 14999

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   gctttcttcctcttcaggatc 332
             |||||||||||||||||||||
Sbjct: 13769 gctttcttcctcttcaggatc 13749
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>ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC364.01),
           partial mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 312 gctttcttcctcttcaggatc 332
           |||||||||||||||||||||
Sbjct: 336 gctttcttcctcttcaggatc 356
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>ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group), P0671F11.9 mRNA
          Length = 2293

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  tttcttcctcttcaggatcgcctt 337
            ||||||||||||||||| ||||||
Sbjct: 1858 tttcttcctcttcaggaccgcctt 1835
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>ref|XM_482186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  tttcttcctcttcaggatcgcctt 337
            ||||||||||||||||| ||||||
Sbjct: 1893 tttcttcctcttcaggaccgcctt 1870
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>gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat receptor-like kinases and
             ternary complex factor MIP1-like genes, complete cds;
             retrotransposon putative membrane-associated protein and
             gag-pol precursor, pseudogenes, complete sequence; and
             unknown genes
          Length = 102522

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agcttctccagtcttttcag 83
             ||||||||||||||||||||
Sbjct: 44105 agcttctccagtcttttcag 44086
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      caaaattggtctagtaagattcat 153
                |||||||| |||||||||||||||
Sbjct: 12464532 caaaattgctctagtaagattcat 12464555
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>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03,
              from chromosome 3, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    caaaattggtctagtaagattcat 153
              |||||||| |||||||||||||||
Sbjct: 123409 caaaattgctctagtaagattcat 123386
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>emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025A1 on chromosome 20p11.21-11.23
             Contains the 5' part of the ACAS2L gene for
             acetyl-Coenzyme A synthetase (AMP forming)-like, the VSX1
             gene for visual system homeobox 1 (zebrafish) homolog
             (CHX10-like), variants L1 and S1 and four CpG islands,
             complete sequence
          Length = 94664

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gttgctctcacctgcaaaat 135
             ||||||||||||||||||||
Sbjct: 56474 gttgctctcacctgcaaaat 56455
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     ctggtagtagcccagcgccg 240
               ||||||||||||||||||||
Sbjct: 2771610 ctggtagtagcccagcgccg 2771591
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>emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in linkage group 25,
              complete sequence
          Length = 189510

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    ctgggctttcttcctcttcaggat 331
              ||||||||||||||| ||||||||
Sbjct: 164613 ctgggctttcttccttttcaggat 164636
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    caaaattggtctagtaagattcat 153
              |||||||| |||||||||||||||
Sbjct: 122214 caaaattgctctagtaagattcat 122237
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gttgctggtgctcgccgggc 213
              ||||||||||||||||||||
Sbjct: 251688 gttgctggtgctcgccgggc 251669
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 237     gccgcgagcagggcgacgagcacg 260
               ||||||||||| ||||||||||||
Sbjct: 1908821 gccgcgagcagcgcgacgagcacg 1908844
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>gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157I4, complete sequence
          Length = 165948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     accaaaattaactgcaactt 24
             ||||||||||||||||||||
Sbjct: 30150 accaaaattaactgcaactt 30131
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 314      tttcttcctcttcaggatcgcctt 337
                ||||||||||||||||| ||||||
Sbjct: 18473105 tttcttcctcttcaggaccgcctt 18473082
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      caaaattggtctagtaagattcat 153
                |||||||| |||||||||||||||
Sbjct: 18561772 caaaattgctctagtaagattcat 18561795
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 130      caaaattggtctagtaagattcat 153
                |||||||| |||||||||||||||
Sbjct: 12461295 caaaattgctctagtaagattcat 12461318
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     agcagggcgacgagcacggc 262
               ||||||||||||||||||||
Sbjct: 3123448 agcagggcgacgagcacggc 3123467
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>gb|AC063945.16| Homo sapiens 12 BAC RP11-417A9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 32993

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   actccacccaacaaacagaa 52
            ||||||||||||||||||||
Sbjct: 1150 actccacccaacaaacagaa 1169
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>gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 59907

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    actccacccaacaaacagaa 52
             ||||||||||||||||||||
Sbjct: 59052 actccacccaacaaacagaa 59071
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   caaaattggtctagtaagattcat 153
             |||||||| |||||||||||||||
Sbjct: 14314 caaaattgctctagtaagattcat 14337
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>dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0463E12
          Length = 161081

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    agcttctccagtcttttcag 83
             ||||||||||||||||||||
Sbjct: 66111 agcttctccagtcttttcag 66130
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   caaaattggtctagtaagattcat 153
             |||||||| |||||||||||||||
Sbjct: 90528 caaaattgctctagtaagattcat 90551
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>dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mRNA for BRI1-KD
            interacting protein 131, complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  tttcttcctcttcaggatcgcctt 337
            ||||||||||||||||| ||||||
Sbjct: 1864 tttcttcctcttcaggaccgcctt 1841
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>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   tttcttcctcttcaggatcgcctt 337
             ||||||||||||||||| ||||||
Sbjct: 55128 tttcttcctcttcaggaccgcctt 55105
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>dbj|AK111680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168E03, full
           insert sequence
          Length = 3393

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  agcttctccagtcttttcag 83
           ||||||||||||||||||||
Sbjct: 965 agcttctccagtcttttcag 946
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>dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113F23, full
            insert sequence
          Length = 2281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  tttcttcctcttcaggatcgcctt 337
            ||||||||||||||||| ||||||
Sbjct: 1893 tttcttcctcttcaggaccgcctt 1870
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>dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G07, full
            insert sequence
          Length = 2293

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  tttcttcctcttcaggatcgcctt 337
            ||||||||||||||||| ||||||
Sbjct: 1858 tttcttcctcttcaggaccgcctt 1835
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   gggcgacgagcacggccacg 266
             ||||||||||||||||||||
Sbjct: 10389 gggcgacgagcacggccacg 10370
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>gb|AF031882.1|AF031882 Euprymna morsei internal transcribed spacer region
          Length = 1285

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 236  cgccgcgagcagggcgacgagcacggcc 263
            |||| ||||||| |||||||||||||||
Sbjct: 991  cgcctcgagcagcgcgacgagcacggcc 1018
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>gb|AF031881.1|AF031881 Euprymna scolopes internal transcribed spacer region
          Length = 1359

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 236  cgccgcgagcagggcgacgagcacggcc 263
            |||| ||||||| |||||||||||||||
Sbjct: 1069 cgcctcgagcagcgcgacgagcacggcc 1096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,205,876
Number of Sequences: 3902068
Number of extensions: 3205876
Number of successful extensions: 72609
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71989
Number of HSP's gapped (non-prelim): 614
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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