>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  139 bits (351), Expect = 6e-33
 Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
 Frame = -3

Query: 644  EYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWFALQATSDIPGNV 465
            ++  A NMT+  AAL+A        R+  + ++ +KW Q+ LV+ KWF LQATS     +
Sbjct: 702  QFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVL 761

Query: 464  ANVRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAKDGSGYKFLGEVVLQLDKINPQV 288
              VR LL H +F M NPN++ SLIG F GS P +FHA+DGSGY FL E++  L+  NPQV
Sbjct: 762  ETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQV 821

Query: 287  ASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLA 144
            ASR++    R +RYD  RQ   +A LE +     LS ++YE  +K+LA
Sbjct: 822  ASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 869

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  130 bits (328), Expect = 3e-30
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
 Frame = -3

Query: 641  YKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWFALQATSDIPGNVA 462
            Y +A NMT+  AAL+  ++     R+  L DF  KWQ D LV+ KWFALQAT      + 
Sbjct: 703  YNNANNMTDTLAALSVATKAALLCRDVLLADFEQKWQHDGLVMDKWFALQATRPDDNVLE 762

Query: 461  NVRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHAKDGSGYKFLGEVVLQLDKINPQVA 285
             ++ L+ HP+F+  NPN++ SL+G F    + +FH   GSGY+FL +V+++L++ NPQVA
Sbjct: 763  IIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVA 822

Query: 284  SRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 147
            +R++    R+ R+D  RQ L K  LE +     LS++++E   K+L
Sbjct: 823  ARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score =  123 bits (308), Expect = 5e-28
 Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 1/166 (0%)
 Frame = -3

Query: 641  YKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWFALQATSDIPGNVA 462
            + +A NMT+    L  +    G  RE AL  F++ W+ + LV+ KWFA+Q     P  + 
Sbjct: 697  FGAARNMTDMIGGLYPMVAMGGVPREKALESFHHAWRTEPLVLDKWFAVQGRDPNPDALE 756

Query: 461  NVRKLLAHPAFDMRNPNKVYSLIGGFCG-SPVSFHAKDGSGYKFLGEVVLQLDKINPQVA 285
             V  L  HP F+  NPN++ +L+  F   +P  FH   G+GY FL + +L++D  NP  A
Sbjct: 757  RVIALTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGAGYAFLADEILKVDAFNPMTA 816

Query: 284  SRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 147
            +R+V     WRRY      L +AQLE I++   LS+NV E+ASK+L
Sbjct: 817  ARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 36/127 (28%), Positives = 61/127 (48%)
 Frame = -3

Query: 545  YNKWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVS 366
            Y   + D L++ +W    + SD       ++KL      D +NPN + ++   F  +   
Sbjct: 950  YKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRR 1009

Query: 365  FHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANG 186
            FH   G GYK + EV+ + DK NP VA+++   F  W + D  RQ L   ++  ++    
Sbjct: 1010 FHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPN 1069

Query: 185  LSENVYE 165
            +S N+ E
Sbjct: 1070 ISNNLKE 1076

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -3

Query: 458 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 279
           +R+ + +  FDM N  KV+ LIG         H +DG        V   L+++N  + + 
Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542

Query: 278 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 150
             S+   W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +2

Query: 203 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 340
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 341 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 445
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,448,244
Number of Sequences: 219361
Number of extensions: 1959546
Number of successful extensions: 5053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5049
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)