| Clone Name | rbags21h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 551 bits (278), Expect = e-153 Identities = 446/502 (88%) Strand = Plus / Minus Query: 140 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 199 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848 Query: 200 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 259 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788 Query: 260 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 319 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2728 Query: 320 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 379 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2727 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2668 Query: 380 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 439 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2667 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2608 Query: 440 gagccagtaacttccgaacattggctacatttccaggaatgtccgaggtagcttgaagag 499 || | |||||||| |||| || || ||||||||||| ||||| || ||||||||||||| Sbjct: 2607 gaccaagtaacttttgaacgttagcaacatttccagggatgtctgatgtagcttgaagag 2548 Query: 500 caaaccacttgcttacaaccaaataatcttgctgccatttgttatagaagtccaaaaggg 559 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2547 caaaccacttgcttacaaccaaataatcatgctgccatttgttatagaagtccagaaggg 2488 Query: 560 catcctcacggacttgacctggattttgagacaatgctgctaatgcagcaaactgctcgg 619 || ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 2487 tgtcatcacgaacttggcctggattttgagacaatgctgctagtgcagcaaactgctccg 2428 Query: 620 tcatgttagtagcagacttgta 641 |||||||||||||||||||||| Sbjct: 2427 tcatgttagtagcagacttgta 2406
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 551 bits (278), Expect = e-153 Identities = 446/502 (88%) Strand = Plus / Minus Query: 140 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 199 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266 Query: 200 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 259 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206 Query: 260 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 319 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2146 Query: 320 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 379 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2145 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2086 Query: 380 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 439 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2085 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2026 Query: 440 gagccagtaacttccgaacattggctacatttccaggaatgtccgaggtagcttgaagag 499 || | |||||||| |||| || || ||||||||||| ||||| || ||||||||||||| Sbjct: 2025 gaccaagtaacttttgaacgttagcaacatttccagggatgtctgatgtagcttgaagag 1966 Query: 500 caaaccacttgcttacaaccaaataatcttgctgccatttgttatagaagtccaaaaggg 559 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 1965 caaaccacttgcttacaaccaaataatcatgctgccatttgttatagaagtccagaaggg 1906 Query: 560 catcctcacggacttgacctggattttgagacaatgctgctaatgcagcaaactgctcgg 619 || ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1905 tgtcatcacgaacttggcctggattttgagacaatgctgctagtgcagcaaactgctccg 1846 Query: 620 tcatgttagtagcagacttgta 641 |||||||||||||||||||||| Sbjct: 1845 tcatgttagtagcagacttgta 1824
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 551 bits (278), Expect = e-153 Identities = 446/502 (88%) Strand = Plus / Minus Query: 140 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 199 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884 Query: 200 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 259 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824 Query: 260 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 319 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2764 Query: 320 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 379 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2763 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2704 Query: 380 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 439 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2703 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2644 Query: 440 gagccagtaacttccgaacattggctacatttccaggaatgtccgaggtagcttgaagag 499 || | |||||||| |||| || || ||||||||||| ||||| || ||||||||||||| Sbjct: 2643 gaccaagtaacttttgaacgttagcaacatttccagggatgtctgatgtagcttgaagag 2584 Query: 500 caaaccacttgcttacaaccaaataatcttgctgccatttgttatagaagtccaaaaggg 559 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2583 caaaccacttgcttacaaccaaataatcatgctgccatttgttatagaagtccagaaggg 2524 Query: 560 catcctcacggacttgacctggattttgagacaatgctgctaatgcagcaaactgctcgg 619 || ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 2523 tgtcatcacgaacttggcctggattttgagacaatgctgctagtgcagcaaactgctccg 2464 Query: 620 tcatgttagtagcagacttgta 641 |||||||||||||||||||||| Sbjct: 2463 tcatgttagtagcagacttgta 2442
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 444 bits (224), Expect = e-121 Identities = 410/472 (86%) Strand = Plus / Minus Query: 175 ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 234 ||||| ||||| |||||||| || | |||||||||| |||||||||||||||||||||| Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922 Query: 235 ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 294 || |||| ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862 Query: 295 ggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatct 354 || ||||| ||||| ||||| ||||| | ||||||||||||||||| |||||||||||| Sbjct: 2861 gggtttatcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatct 2802 Query: 355 ttcgcgtgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttc 414 |||||||| || |||||||||| ||||| || || || |||| ||||| |||||||| Sbjct: 2801 ttcgcgtggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttg 2742 Query: 415 ggattccgcatgtcaaaagcaggatgagccagtaacttccgaacattggctacatttcca 474 ||||||| || ||| |||||||| |||| ||| | |||| ||||||| || ||||||||| Sbjct: 2741 ggattcctcaggtcgaaagcagggtgagacagcagcttctgaacatttgcaacatttcca 2682 Query: 475 ggaatgtccgaggtagcttgaagagcaaaccacttgcttacaaccaaataatcttgctgc 534 ||||| || || ||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 2681 ggaatctctgaagtagcttgaagagcaaaccacttgcttacaaccaagtattcatgctgc 2622 Query: 535 catttgttatagaagtccaaaagggcatcctcacggacttgacctggattttgagacaat 594 || ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| || ||| Sbjct: 2621 cacttgttatagaaatccaagagggcatcatcacgaacttggcctggattttgggataat 2562 Query: 595 gctgctaatgcagcaaactgctcggtcatgttagtagcagacttgtactcat 646 ||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 2561 gctgctaatgcagcaaactgctctgtcatgttagtcgcagacttgtactcat 2510
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 440 bits (222), Expect = e-120 Identities = 405/466 (86%) Strand = Plus / Minus Query: 181 gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 240 ||||| |||||||| || | |||||||||| |||||||||||||||||||||||| ||| Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790 Query: 241 tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggattt 300 | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730 Query: 301 attttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatctttcgcg 360 || ||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||| Sbjct: 1729 atcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatctttcgcg 1670 Query: 361 tgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttcggattc 420 || || |||||||||| ||||| || || || |||| ||||| |||||||| |||||| Sbjct: 1669 tggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttgggattc 1610 Query: 421 cgcatgtcaaaagcaggatgagccagtaacttccgaacattggctacatttccaggaatg 480 | || ||| |||||||| |||| ||| | |||| ||||||| || |||||||||||||| Sbjct: 1609 ctcaggtcgaaagcagggtgagacagcagcttctgaacatttgcaacatttccaggaatc 1550 Query: 481 tccgaggtagcttgaagagcaaaccacttgcttacaaccaaataatcttgctgccatttg 540 || || ||||||||||||||||||||||||||||||||||| || || |||||||| ||| Sbjct: 1549 tctgaagtagcttgaagagcaaaccacttgcttacaaccaagtattcatgctgccacttg 1490 Query: 541 ttatagaagtccaaaagggcatcctcacggacttgacctggattttgagacaatgctgct 600 |||||||| ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||| Sbjct: 1489 ttatagaaatccaagagggcatcatcacgaacttggcctggattttgggataatgctgct 1430 Query: 601 aatgcagcaaactgctcggtcatgttagtagcagacttgtactcat 646 ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 1429 aatgcagcaaactgctctgtcatgttagtcgcagacttgtactcat 1384
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 176 bits (89), Expect = 6e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 517 accaaataatcttgctgccatttgttatagaagtccaaaagggcatcctcacggacttga 576 ||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct: 28167075 accaaataatcatgctgccatttgttatagaagtccagaagggtgtcatcacgaacttgg 28167134 Query: 577 cctggattttgagacaatgctgctaatgcagcaaactgctcggtcatgttagtagcagac 636 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 28167135 cctggattttgagacaatgctgctagtgcagcaaactgctccgtcatgttagtagcagac 28167194 Query: 637 ttgta 641 ||||| Sbjct: 28167195 ttgta 28167199 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 289 acctgaggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 348 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 28166653 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 28166712 Query: 349 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 397 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 28166713 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 28166761 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 404 ataccttgttcggattccgcatgtcaaaagcaggatgagccagtaacttccgaacattgg 463 |||||||||||||||||| ||||||||||||||| ||| | |||||||| |||| || | Sbjct: 28166842 ataccttgttcggattcctcatgtcaaaagcagggtgaccaagtaacttttgaacgttag 28166901 Query: 464 ctacatttccaggaatgtccgaggtagcttgaagagcaaaccacttgcttacaacc 519 | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct: 28166902 caacatttccagggatgtctgatgtagcttgaagagcaaaccacttgcttacaacc 28166957 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 218 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 277 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554 Query: 278 tgcgggatgccacct 292 ||||||| ||||||| Sbjct: 28166555 tgcgggaggccacct 28166569 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Plus Query: 140 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 199 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399 Query: 200 taatcatctccaactgggcct 220 |||||||||| ||| |||| Sbjct: 28166400 cgatcatctccagctgagcct 28166420
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 176 bits (89), Expect = 6e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 517 accaaataatcttgctgccatttgttatagaagtccaaaagggcatcctcacggacttga 576 ||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct: 50548 accaaataatcatgctgccatttgttatagaagtccagaagggtgtcatcacgaacttgg 50607 Query: 577 cctggattttgagacaatgctgctaatgcagcaaactgctcggtcatgttagtagcagac 636 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 50608 cctggattttgagacaatgctgctagtgcagcaaactgctccgtcatgttagtagcagac 50667 Query: 637 ttgta 641 ||||| Sbjct: 50668 ttgta 50672 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 289 acctgaggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 348 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 50126 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 50185 Query: 349 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 397 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 50186 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 50234 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 404 ataccttgttcggattccgcatgtcaaaagcaggatgagccagtaacttccgaacattgg 463 |||||||||||||||||| ||||||||||||||| ||| | |||||||| |||| || | Sbjct: 50315 ataccttgttcggattcctcatgtcaaaagcagggtgaccaagtaacttttgaacgttag 50374 Query: 464 ctacatttccaggaatgtccgaggtagcttgaagagcaaaccacttgcttacaacc 519 | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct: 50375 caacatttccagggatgtctgatgtagcttgaagagcaaaccacttgcttacaacc 50430 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 218 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 277 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027 Query: 278 tgcgggatgccacct 292 ||||||| ||||||| Sbjct: 50028 tgcgggaggccacct 50042 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Plus Query: 140 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 199 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872 Query: 200 taatcatctccaactgggcct 220 |||||||||| ||| |||| Sbjct: 49873 cgatcatctccagctgagcct 49893
>emb|AJ234438.1|HVU234438 Hordeum vulgare partial mRNA; clone cMWG0721 Length = 376 Score = 168 bits (85), Expect = 1e-38 Identities = 85/85 (100%) Strand = Plus / Plus Query: 565 tcacggacttgacctggattttgagacaatgctgctaatgcagcaaactgctcggtcatg 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24 tcacggacttgacctggattttgagacaatgctgctaatgcagcaaactgctcggtcatg 83 Query: 625 ttagtagcagacttgtactcattta 649 ||||||||||||||||||||||||| Sbjct: 84 ttagtagcagacttgtactcattta 108 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 546 gaagtccaaaagggcatcctcac 568 ||||||||||||||||||||||| Sbjct: 25 gaagtccaaaagggcatcctcac 3
>ref|NM_105053.3| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.1 mRNA, complete cds Length = 3229 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 271 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 330 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2811 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2752 Query: 331 aagaacttgtaaccagaaccatc 353 |||||||||||||| || ||||| Sbjct: 2751 aagaacttgtaacctgatccatc 2729 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 514 acaaccaaataatcttgctgccatttgttatagaagtc 551 |||||||| ||||| | |||||| |||||||||||||| Sbjct: 2564 acaaccaagtaatcgtcctgccacttgttatagaagtc 2527
>gb|BT010361.1| Arabidopsis thaliana At1g63770 mRNA, complete cds Length = 2652 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 271 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 330 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2519 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2460 Query: 331 aagaacttgtaaccagaaccatc 353 |||||||||||||| || ||||| Sbjct: 2459 aagaacttgtaacctgatccatc 2437 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 514 acaaccaaataatcttgctgccatttgttatagaagtc 551 |||||||| ||||| | |||||| |||||||||||||| Sbjct: 2276 acaaccaagtaatcgtcctgccacttgttatagaagtc 2239
>gb|AY960336.1| Arabidopsis thaliana M1 aminopeptidase mRNA, complete cds, alternatively spliced Length = 3051 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 271 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 330 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2747 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2688 Query: 331 aagaacttgtaaccagaaccatc 353 |||||||||||||| || ||||| Sbjct: 2687 aagaacttgtaacctgatccatc 2665 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 514 acaaccaaataatcttgctgccatttgttatagaagtc 551 |||||||| ||||| | |||||| |||||||||||||| Sbjct: 2504 acaaccaagtaatcgtcctgccacttgttatagaagtc 2467
>gb|BT002074.1| Arabidopsis thaliana putative aminopeptidase (At1g63770) mRNA, complete cds Length = 3056 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 271 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 330 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2749 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2690 Query: 331 aagaacttgtaaccagaaccatc 353 |||||||||||||| || ||||| Sbjct: 2689 aagaacttgtaacctgatccatc 2667 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 514 acaaccaaataatcttgctgccatttgttatagaagtc 551 |||||||| ||||| | |||||| |||||||||||||| Sbjct: 2506 acaaccaagtaatcgtcctgccacttgttatagaagtc 2469
>ref|NM_202354.1| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.2 mRNA, complete cds Length = 3331 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 514 acaaccaaataatcttgctgccatttgttatagaagtc 551 |||||||| ||||| | |||||| |||||||||||||| Sbjct: 2564 acaaccaagtaatcgtcctgccacttgttatagaagtc 2527 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 tcacccaagaacttgtaaccagaaccatc 353 |||||||||||||||||||| || ||||| Sbjct: 2753 tcacccaagaacttgtaacctgatccatc 2725
>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3, complete sequence Length = 94749 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 cttgtaaccagaaccatctttc 357 |||||||||||||||||||||| Sbjct: 49323 cttgtaaccagaaccatctttc 49302
>gb|AC095014.1| Drosophila melanogaster, chromosome 3R, region 83F-84A, BAC clone BACR19D23, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gaagagcaaaccacttgctta 514 ||||||||||||||||||||| Sbjct: 43001 gaagagcaaaccacttgctta 42981
>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone BACR19I14, complete sequence Length = 175648 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gaagagcaaaccacttgctta 514 ||||||||||||||||||||| Sbjct: 174694 gaagagcaaaccacttgctta 174674
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence Length = 429825 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 gaagagcaaaccacttgctta 514 ||||||||||||||||||||| Sbjct: 347769 gaagagcaaaccacttgctta 347789
>emb|BX817670.1|CNS0AE3V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZA11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 654 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 tcacccaagaacttgtaaccagaaccatc 353 |||||||||||||||||||| || ||||| Sbjct: 187 tcacccaagaacttgtaacctgatccatc 159
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 tcacccaagaacttgtaaccagaaccatc 353 |||||||||||||||||||| || ||||| Sbjct: 10530 tcacccaagaacttgtaacctgatccatc 10502
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 520 aaataatcttgctgccatttg 540 ||||||||||||||||||||| Sbjct: 4832963 aaataatcttgctgccatttg 4832983
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete sequence Length = 298020 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gaagagcaaaccacttgctta 514 ||||||||||||||||||||| Sbjct: 228838 gaagagcaaaccacttgctta 228818
>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete sequence Length = 85757 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gaagagcaaaccacttgctta 514 ||||||||||||||||||||| Sbjct: 82057 gaagagcaaaccacttgctta 82037
>ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_2697), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 aggatttattttgtcgagct 313 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_10212), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 aggatttattttgtcgagct 313 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>gb|AC005047.3| Homo sapiens BAC clone CTB-14E15 from 7, complete sequence Length = 154016 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 attttgagacaatgctgcta 601 |||||||||||||||||||| Sbjct: 102695 attttgagacaatgctgcta 102676
>gb|AC005550.1| Homo sapiens PAC clone RP4-620P6 from 7, complete sequence Length = 133237 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 ttgctgccatttgttatagaagtc 551 |||||| ||||||||||||||||| Sbjct: 82498 ttgctgtcatttgttatagaagtc 82475
>gb|AC147099.2| Pan troglodytes BAC clone RP43-50K9 from 7, complete sequence Length = 170612 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 attttgagacaatgctgcta 601 |||||||||||||||||||| Sbjct: 60549 attttgagacaatgctgcta 60530
>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5, complete sequence Length = 182066 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tggcagaatcaaatttgttt 122 |||||||||||||||||||| Sbjct: 9480 tggcagaatcaaatttgttt 9461
>emb|AL034551.17|HS606P22 Human DNA sequence from clone RP4-606P22 on chromosome 20p12 Contains part of the PLCB1 gene for phospholipase C beta 1 (phosphoinositide-specific), complete sequence Length = 137723 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 atttgttatagaagtccaaa 555 |||||||||||||||||||| Sbjct: 112818 atttgttatagaagtccaaa 112799
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 taaatacagcagaatatatt 56 |||||||||||||||||||| Sbjct: 89696 taaatacagcagaatatatt 89677
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 taaatacagcagaatatatt 56 |||||||||||||||||||| Sbjct: 45601 taaatacagcagaatatatt 45620
>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence Length = 43180 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 36 ctaaatacagcagaatatattcagttaa 63 |||||| |||||||||||||||| |||| Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 agacattttcagagagtcca 189 |||||||||||||||||||| Sbjct: 33908 agacattttcagagagtcca 33927
>emb|AL806512.9| Mouse DNA sequence from clone RP23-354A20 on chromosome 4, complete sequence Length = 211131 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 cttgcttacaaccaaataat 526 |||||||||||||||||||| Sbjct: 105332 cttgcttacaaccaaataat 105351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,759,913 Number of Sequences: 3902068 Number of extensions: 5759913 Number of successful extensions: 118456 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118338 Number of HSP's gapped (non-prelim): 118 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)