ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21g23 |
|---|---|
| Clone Library Name | barley_pub |
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 154 bits (390), Expect = 2e-37 Identities = 72/123 (58%), Positives = 88/123 (71%), Gaps = 1/123 (0%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXVKDD- 438 ID++S+ TL+SFGF EDV+R ALKA GG+IE+AT+WVF++P + Sbjct: 671 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPNASVSDMDVSSSNSAQTPA 730 Query: 437 NSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAASVDLPKDMGYL 258 S + DG G+YKL VSHMGTS HCGHYVAHILK+GRW IFND+KV S D PKDMGY+ Sbjct: 731 QSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKVGISTDPPKDMGYV 790 Query: 257 YFF 249 YFF Sbjct: 791 YFF 793
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 122 bits (307), Expect = 7e-28 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 9/140 (6%) Frame = -2 Query: 626 AEDTIDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXV 447 A D E + T+VS GF D + AL+A ++ERA +W+FSH + Sbjct: 719 AADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGR 778 Query: 446 KDDNS---------HISDGSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVA 294 +S + DG G+Y+L AF+SHMGTST CGHYV HI K+GRW I+ND KV Sbjct: 779 SAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVC 838 Query: 293 ASVDLPKDMGYLYFFXXISS 234 AS PKD+GY+YF+ ++S Sbjct: 839 ASEKPPKDLGYIYFYQRVAS 858 Score = 32.7 bits (73), Expect = 0.94 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGN-IERATEWVFSH 495 +DE+ + LV GFP D R A+ G + E A WV SH Sbjct: 655 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 695
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 121 bits (303), Expect = 2e-27 Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 9/140 (6%) Frame = -2 Query: 626 AEDTIDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXV 447 A D E + T+VS GF D + AL+A ++ERA +W+FSH + Sbjct: 719 AADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGR 778 Query: 446 KDDNS---------HISDGSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVA 294 S + DG G+Y+L AF+SHMGTST CGHYV HI K+GRW I+ND KV Sbjct: 779 SAAESISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVC 838 Query: 293 ASVDLPKDMGYLYFFXXISS 234 AS PKD+GY+YF+ + S Sbjct: 839 ASEKPPKDLGYIYFYQRVVS 858 Score = 32.7 bits (73), Expect = 0.94 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGN-IERATEWVFSH 495 +DE+ + LV GFP D R A+ G + E A WV SH Sbjct: 655 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 695
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 120 bits (302), Expect = 3e-27 Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 9/134 (6%) Frame = -2 Query: 608 EASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXX---------XXXXXX 456 E + + S GF + + AL+A N+ERA +W+FSHPE Sbjct: 730 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANII 789 Query: 455 XXVKDDNSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAASVDLP 276 K + + DGSG Y+L AF+SHMGTST GHY+ HI K+GRW I+ND+KV AS P Sbjct: 790 SEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPP 849 Query: 275 KDMGYLYFFXXISS 234 KD+GY+YF+ I S Sbjct: 850 KDLGYMYFYRRIPS 863 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGG-NIERATEWVFSHPE 489 IDE+S+ L GFP + R A+ G E A W+ H E Sbjct: 653 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHME 695
>UBPA_DICDI (P54201) Ubiquitin carboxyl-terminal hydrolase A (EC 3.1.2.15)| (Ubiquitin thioesterase A) (Ubiquitin-specific-processing protease A) (Deubiquitinating enzyme A) Length = 837 Score = 100 bits (249), Expect = 4e-21 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 10/127 (7%) Frame = -2 Query: 599 LQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXVKDDNSHI-- 426 + ++ GF + +++ALK GN+ERA +W+FSH + + S I Sbjct: 706 VDNIIGMGFTDSQAKLALKNTKGNLERAADWLFSHIDNLDELVAKDNASTSSINPSLIPQ 765 Query: 425 --------SDGSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAASVDLPKD 270 SDG G+Y+L F+SH+G + CGHYV HI K+ RW FND V S PK+ Sbjct: 766 STTSLQPVSDGVGKYELLGFISHLGNNVTCGHYVCHIKKNNRWIKFNDRHVQLSEQPPKE 825 Query: 269 MGYLYFF 249 +GY+YF+ Sbjct: 826 LGYIYFY 832 Score = 33.1 bits (74), Expect = 0.72 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 623 EDTIDEASLQTLVSFGFPEDVSRMALKAXGG-NIERATEWVFSHPE 489 E + ++ L TL+S FP + AL A GG + E A W+F H E Sbjct: 626 EPSFNQEVLDTLLSMDFPLVRCKKALLATGGKDAELAMNWIFEHTE 671
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 84.7 bits (208), Expect = 2e-16 Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 10/136 (7%) Frame = -2 Query: 626 AEDTIDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHP-EXXXXXXXXXXXXX 450 A+ ++ E ++Q+L FGF +R L NIERA +W+ +HP E Sbjct: 636 ADSSVSEENVQSLCEFGFTVAQARKGLLESNNNIERAVDWILNHPDESFEEPPLEGSDSS 695 Query: 449 VKDDNSHISDGSG---RYKLTAFVSHMGTSTHCGHYVAHILK--DGR--WTIFNDNKV-- 297 +K++N + + Y L A +SH G+S H GHYVA I K DG+ W +FND KV Sbjct: 696 IKNENMGSWESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQ 755 Query: 296 AASVDLPKDMGYLYFF 249 AS++ K GY+Y F Sbjct: 756 VASLEEAKTTGYVYLF 771
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 73.2 bits (178), Expect = 6e-13 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXVKDDN 435 +DE SL +++S G ++ R AL G++ R+ EWVF++ + + Sbjct: 672 VDEVSLTSMLSMGLNPNLCRKALILNNGDVNRSVEWVFNNMDDDGTFPEPEVPNEEQQQK 731 Query: 434 SHISDGSGR-YKLTAFVSHMGTSTHCGHYVAHILK----DGRWTIFNDNKVAA--SVDLP 276 + + + Y LTA + H G S H GHYV I K +W ++ND K+ A S++ Sbjct: 732 KDLGYSTAKPYALTAVICHKGNSVHSGHYVVFIRKLVADKWKWVLYNDEKLVAADSIEDM 791 Query: 275 KDMGYLYFF 249 K GY+YF+ Sbjct: 792 KKNGYIYFY 800
>UBP3_MOUSE (Q91W36) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) Length = 520 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAASVD--LPKDMGYLYFF 249 Y L A V H G+ GHY A+ + +GRW FND+ V + + + K Y+ F+ Sbjct: 454 YDLAAVVVHHGSGVGSGHYTAYAVHEGRWFHFNDSTVTVTDEETVGKAKAYILFY 508
>UBP14_CAEEL (Q17361) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) Length = 489 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -2 Query: 425 SDGSGRYKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNKV 297 S+ SG Y L ++H G S+ GHYVA + +DG+W +F+D V Sbjct: 386 SNNSGFYDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHV 430
>UBP3_HUMAN (Q9Y6I4) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) Length = 521 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAASVD--LPKDMGYLYFF 249 Y L A V H G+ GHY A+ +GRW FND+ V + + + K Y+ F+ Sbjct: 455 YDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFY 509
>UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (EC 3.1.2.15)| (Ubiquitin thioesterase 37) (Ubiquitin-specific-processing protease 37) (Deubiquitinating enzyme 37) Length = 979 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 7/60 (11%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNKVA----ASVDLPKD-MGYLYFF 249 Y+L + VSH+G+++ GHY++ + +K W +ND +V+ A+V +D GY++F+ Sbjct: 889 YRLISVVSHIGSTSSSGHYISDVYDIKKQAWFTYNDLEVSKIQEAAVQSDRDRSGYIFFY 948
>UBP14_HUMAN (P54578) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) Length = 493 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -2 Query: 425 SDGSGRYKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAASVDLPKDM 267 S+ G Y L A ++H G S+ GHYV+ + K W F+D+KV S+ P+D+ Sbjct: 411 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKV--SIVTPEDI 462
>UBP14_PANTR (P60051) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) Length = 492 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -2 Query: 425 SDGSGRYKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAASVDLPKDM 267 S+ G Y L A ++H G S+ GHYV+ + K W F+D+KV S+ P+D+ Sbjct: 411 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKV--SIVTPEDI 462
>UBP14_MOUSE (Q9JMA1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) Length = 492 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -2 Query: 425 SDGSGRYKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAASVDLPKDM 267 S+ G Y L A ++H G S+ GHYV+ + K W F+D+KV S+ P+D+ Sbjct: 410 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVRRKQDEWIKFDDDKV--SIVTPEDI 461
>UBP14_RABIT (P40826) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) Length = 492 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -2 Query: 425 SDGSGRYKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAASVDLPKDM 267 S+ G Y L A ++H G S+ GHYV+ + K W F+D+KV S+ P+D+ Sbjct: 410 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKHDEWIKFDDDKV--SIVTPEDI 461
>UBP29_MOUSE (Q9ES63) Ubiquitin carboxyl-terminal hydrolase 29 (EC 3.1.2.15)| (Ubiquitin thioesterase 29) (Ubiquitin-specific-processing protease 29) (Deubiquitinating enzyme 29) Length = 869 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Frame = -2 Query: 437 NSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNKVAASVDLP---- 276 + + D Y+L + VSH G+S + GHYV+ + + W +++D +V S D Sbjct: 754 DGEMGDDLQNYRLVSVVSHFGSSPNSGHYVSDVYDFQKQAWLLYSDVQVFESSDPSIQEN 813 Query: 275 -KDMGYLYFF 249 + GY++F+ Sbjct: 814 RLNSGYIFFY 823
>UBP8_YEAST (P50102) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)| (Ubiquitin thioesterase 8) (Ubiquitin-specific processing protease 8) (Deubiquitinating enzyme 8) Length = 471 Score = 38.1 bits (87), Expect = 0.022 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Frame = -2 Query: 446 KDDNSHISDGSGR---YKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVA--ASV 285 K+ + H +G Y+L VSH GT GHY+A + G+W FND+ V+ + Sbjct: 395 KEKDKHSENGKVPDIIYELIGIVSHKGTVNE-GHYIAFCKISGGQWFKFNDSMVSSISQE 453 Query: 284 DLPKDMGYLYFF 249 ++ K+ YL F+ Sbjct: 454 EVLKEQAYLLFY 465
>UBP49_HUMAN (Q70CQ1) Ubiquitin carboxyl-terminal hydrolase 49 (EC 3.1.2.15)| (Ubiquitin thioesterase 49) (Ubiquitin-specific-processing protease 49) (Deubiquitinating enzyme 49) Length = 688 Score = 36.6 bits (83), Expect = 0.065 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Frame = -2 Query: 446 KDDNSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNK--VAASVDL 279 +D S + + Y L+A V H G GHY A+ + G W ND+K V + ++ Sbjct: 585 RDMLSSLDKETFAYDLSAVVMHHGKGFGSGHYTAYCYNTEGGFWVHCNDSKLNVCSVEEV 644 Query: 278 PKDMGYLYFFX--XISS*SRRFEVIVHAHISSGSMADGR 168 K Y+ F+ + +R E + A + S + +GR Sbjct: 645 CKTQAYILFYTQRTVQGNARISETHLQAQVQSSNNDEGR 683
>UBP21_HUMAN (Q9UK80) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)| (Ubiquitin thioesterase 21) (Ubiquitin-specific-processing protease 21) (Deubiquitinating enzyme 21) (NEDD8-specific protease) Length = 565 Score = 36.2 bits (82), Expect = 0.085 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 419 GSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVA--ASVDLPKDMGYLYFF 249 GS Y+L A +H G S H GHY A W ++ND++V+ + + GY+ F+ Sbjct: 498 GSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 555
>UBP6_YEAST (P43593) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6) (Deubiquitinating enzyme 6) Length = 499 Score = 36.2 bits (82), Expect = 0.085 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHI---LKDGRWTIFNDNKVA 294 Y L ++H G ++ GHY A I L + +W FND+KV+ Sbjct: 430 YNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVS 470
>UBP21_MOUSE (Q9QZL6) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)| (Ubiquitin thioesterase 21) (Ubiquitin-specific processing protease 21) (Deubiquitinating enzyme 21) Length = 566 Score = 36.2 bits (82), Expect = 0.085 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 419 GSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVA--ASVDLPKDMGYLYFF 249 GS Y+L A +H G S H GHY A W ++ND++V+ + + GY+ F+ Sbjct: 499 GSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFY 556
>UBP10_YEAST (P53874) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)| (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) (Deubiquitinating enzyme 10) (Disrupter of telomere silencing protein 4) Length = 792 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -2 Query: 410 RYKLTAFVSHMGTSTHCGHYVAHILK-DGRWTIFNDNKV 297 +Y+L + V H G S GHY+AH + DG W ++D + Sbjct: 673 KYQLLSVVVHEGRSLSSGHYIAHCKQPDGSWATYDDEYI 711
>UBP18_HUMAN (Q9UMW8) Ubl carboxyl-terminal hydrolase 18 (EC 3.1.2.-) (Ubl| thioesterase 18) (ISG15-specific-processing protease) (43 kDa ISG15-specific protease) (hUBP43) Length = 372 Score = 35.4 bits (80), Expect = 0.15 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -2 Query: 413 GRYKLTAFVSHMGTSTHCGHYVAHILK--DGRWTIFNDNKV 297 G+Y+L A ++H+G + GHY +I DG+W FND+ + Sbjct: 300 GQYELFAVIAHVGMADS-GHYCVYIRNAVDGKWFCFNDSNI 339
>UBP29_HUMAN (Q9HBJ7) Ubiquitin carboxyl-terminal hydrolase 29 (EC 3.1.2.15)| (Ubiquitin thioesterase 29) (Ubiquitin-specific-processing protease 29) (Deubiquitinating enzyme 29) Length = 922 Score = 35.0 bits (79), Expect = 0.19 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Frame = -2 Query: 437 NSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNKVAASVDLPKD-- 270 N + D Y+L + VSH+G+S + GHY++ + + W +ND V+ + Sbjct: 813 NVKMGDPLQAYRLISVVSHIGSSPNSGHYISDVYDFQKQAWFTYNDLCVSEISETKMQEA 872 Query: 269 ---MGYLYFF 249 GY++F+ Sbjct: 873 RLHSGYIFFY 882
>UBP49_MOUSE (Q6P9L4) Ubiquitin carboxyl-terminal hydrolase 49 (EC 3.1.2.15)| (Ubiquitin thioesterase 49) (Ubiquitin-specific-processing protease 49) (Deubiquitinating enzyme 49) Length = 685 Score = 34.7 bits (78), Expect = 0.25 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Frame = -2 Query: 446 KDDNSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHI--LKDGRWTIFNDNK--VAASVDL 279 +D S + + Y L+A V H G GHY A+ + G W ND+K V + ++ Sbjct: 582 RDMLSSLDKETFAYDLSAVVMHHGKGFGSGHYTAYCYNTEGGFWVHCNDSKLDVCSVEEV 641 Query: 278 PKDMGYLYFFX--XISS*SRRFEVIVHAHISSGSMADGRRT 162 K Y+ F+ + ++ E + A + S S D RRT Sbjct: 642 CKTQAYILFYTRRTVQGSAKLSEPHLQAQVHSSS-KDERRT 681
>UBP18_MOUSE (Q9WTV6) Ubl carboxyl-terminal hydrolase 18 (EC 3.1.2.-) (Ubl| thioesterase 18) (ISG15-specific-processing protease) (43 kDa ISG15-specific protease) Length = 368 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILK--DGRWTIFNDNKV 297 Y+L A ++H+G + GHY A+I DG+W FND+ V Sbjct: 298 YELFAVIAHVGMADF-GHYCAYIRNPVDGKWFCFNDSHV 335
>UBP46_MOUSE (P62069) Ubiquitin carboxyl-terminal hydrolase 46 (EC 3.1.2.15)| (Ubiquitin thioesterase 46) (Ubiquitin-specific-processing protease 46) (Deubiquitinating enzyme 46) Length = 366 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 Y L A V H G+ + GHY+ + G W +F+D+ V Sbjct: 296 YDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIV 332
>UBP46_HUMAN (P62068) Ubiquitin carboxyl-terminal hydrolase 46 (EC 3.1.2.15)| (Ubiquitin thioesterase 46) (Ubiquitin-specific-processing protease 46) (Deubiquitinating enzyme 46) Length = 366 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 Y L A V H G+ + GHY+ + G W +F+D+ V Sbjct: 296 YDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIV 332
>UBP4_ARATH (Q8LAM0) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (AtUBP4) Length = 365 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 Y L A V H+G+ + GHYV+ + W F+D V Sbjct: 293 YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESV 329
>UBP3_ARATH (O24454) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) (AtUBP3) Length = 371 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 Y L A V H+G+ + GHYV+ + W F+D V Sbjct: 298 YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENV 334
>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)| (Ubiquitin-protein ligase 1) Length = 3684 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGN-IERATEWVFSHPE 489 +DE+ + +V GF + +AL+ G N +E A +W+F++PE Sbjct: 1270 LDESIVGMIVEMGFSRSRAEIALRRVGTNSVEMAMDWLFTNPE 1312
>UBPX_CAEEL (P34547) Probable ubiquitin carboxyl-terminal hydrolase R10E11.3| (EC 3.1.2.15) (Ubiquitin thioesterase) (Ubiquitin-specific processing protease) (Deubiquitinating enzyme) Length = 410 Score = 33.9 bits (76), Expect = 0.42 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 419 GSGRYKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 G Y L A V H G + + GHY+ + + W +F+D+ V Sbjct: 321 GDRMYDLVATVVHCGATPNRGHYITLVKSNSFWLVFDDDIV 361
>UBP6_SCHPO (Q92353) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thiolesterase 6) (Ubiquitin-specific processing protease 6) (Deubiquitinating enzyme 6) Length = 467 Score = 33.5 bits (75), Expect = 0.55 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -2 Query: 416 SGRYKLTAFVSHMGTSTHCGHYVAHILKD---GRWTIFNDNKVA 294 +G Y L +SH G S GHY A I W FND KV+ Sbjct: 394 TGLYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVS 437
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 33.5 bits (75), Expect = 0.55 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAAS 288 Y L A + H G S H GHY ++ +G+W ND+ V +S Sbjct: 365 YGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSS 405
>UBP26_HUMAN (Q9BXU7) Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.1.2.15)| (Ubiquitin thioesterase 26) (Ubiquitin-specific-processing protease 26) (Deubiquitinating enzyme 26) Length = 913 Score = 33.5 bits (75), Expect = 0.55 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Frame = -2 Query: 446 KDDNSHISDGSGRYKLTAFVSHMGTSTHCGHYV--AHILKDGRWTIFNDNKVAA--SVDL 279 K+ + G Y+L + VSH+G + GHY+ A+ + W ++D +V + Sbjct: 811 KETKRNDDKGDHTYRLISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQM 870 Query: 278 PKD---MGYLYFF 249 +D GY++F+ Sbjct: 871 QEDRRCTGYIFFY 883
>UBP12_HUMAN (O75317) Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)| (Ubiquitin thioesterase 12) (Ubiquitin-specific-processing protease 12) (Deubiquitinating enzyme 12) (Ubiquitin hydrolyzing enzyme 1) Length = 355 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV 297 Y L A V H G+ + GHY+A + W +F+D+ V Sbjct: 285 YDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIV 321
>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)| (Ubiquitin-protein ligase 2) Length = 3658 Score = 32.7 bits (73), Expect = 0.94 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = -2 Query: 611 DEASLQTLVSFGFPEDVSRMALKAXGGN-IERATEWVFSHPE 489 DEA + +V GF + AL+ G N +E A +W+F++PE Sbjct: 1273 DEAIVGMIVEMGFSRSRAEDALRRVGTNSVEMAMDWLFTNPE 1314
>UBP3_YEAST (Q01477) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)| (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) Length = 912 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = -2 Query: 446 KDDNSHISDGSGRYKLTAFVSHMGTSTHCGHYVAHIL--KDGRWTIFNDNKVAASVD 282 K++ S I D RYKLT + H G S+ GHY A + + +W +D + D Sbjct: 833 KNNTSGIDDR--RYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELED 887
>UBP9_SCHPO (Q9P7V9) Probable ubiquitin carboxyl-terminal hydrolase 9 (EC| 3.1.2.15) (Ubiquitin thioesterase 9) (Ubiquitin-specific processing protease 9) (Deubiquitinating enzyme 9) Length = 585 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAASVDLPKDMGYLYFF 249 Y L++ + H+G H GHYV+ + K W +F+D V P + YL F Sbjct: 358 YYLSSVIVHVGGGPHRGHYVSIVRTKTYGWVLFDDENVT-----PVNENYLQRF 406
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHI-LKDGRWTIFNDNKVAAS 288 Y L A + H G + H GHY +I +G W ND+ V+ S Sbjct: 354 YVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTS 394
>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)| (Ubiquitin thioesterase 35) (Ubiquitin-specific-processing protease 35) (Deubiquitinating enzyme 35) Length = 1017 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 27/87 (31%) Frame = -2 Query: 428 ISDGSGR-YKLTAFVSHMGTSTHCGHYVAHILK-----------------DGRWTIFNDN 303 ++ G G+ Y L + V H G S+ GHY + + + +W +FND Sbjct: 836 LAGGRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAASLGTADRPEPENQWYLFNDT 895 Query: 302 KVAAS---------VDLPKDMGYLYFF 249 +V+ S PKD Y+ F+ Sbjct: 896 RVSFSSFESVSNVTSFFPKDTAYVLFY 922
>NUB1_HUMAN (Q9Y5A7) NEDD8 ultimate buster 1 (NY-REN-18 antigen)| Length = 615 Score = 31.6 bits (70), Expect = 2.1 Identities = 21/91 (23%), Positives = 34/91 (37%) Frame = -2 Query: 614 IDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSHPEXXXXXXXXXXXXXVKDDN 435 ID + + L+ GF +R+ L+A GN++ A + + E + Sbjct: 375 IDPSKVDNLLQLGFTAQEARLGLRACDGNVDHAATHITNRREELAQIRKEEKEKKRR--- 431 Query: 434 SHISDGSGRYKLTAFVSHMGTSTHCGHYVAH 342 R + F+ MG STH V H Sbjct: 432 --------RLENIRFLKGMGYSTHAAQQVLH 454
>YJH0_YEAST (P40361) Protein YJL070C| Length = 888 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +1 Query: 394 AVSLYLPLPSDMCELSSFTVLVEESADTELDASGWLKTHSVALSI 528 A S+YL P+D+CELS +VL S+ E GW K H + + + Sbjct: 792 AASIYLLNPTDLCELSRTSVL---SSGYE----GWYKAHWIGVGV 829
>TDRD3_HUMAN (Q9H7E2) Tudor domain-containing protein 3| Length = 651 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 620 DTIDEASLQTLVSFGFPEDVSRMALKAXGGNIERA 516 + +DE +L+ + GF ++ SR AL G N+E A Sbjct: 192 ELVDEKALKHITEMGFSKEASRQALMDNGNNLEAA 226
>UBP44_HUMAN (Q9H0E7) Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15)| (Ubiquitin thioesterase 44) (Ubiquitin-specific-processing protease 44) (Deubiquitinating enzyme 44) Length = 712 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHIL--KDGRWTIFNDNKVAASV--DLPKDMGYLYFF 249 Y L+A V H G GHY A+ + G W ND+K++ ++ K Y+ F+ Sbjct: 619 YDLSAVVMHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMDEVCKAQAYILFY 675
>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)| Length = 428 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 617 TIDEASLQTLVSFGFPEDVSRMALKAXGGNIERATEWVF 501 T E +++ L+ GFP D ALK GN E A +F Sbjct: 389 TFPEQTIKQLMDLGFPRDAVVKALKQTNGNAEFAASLLF 427
>UBP11_SCHPO (Q9UUD6) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) Length = 350 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKVAAS 288 Y L + ++H G+ T+ GHY+ + L+D W ND+ + S Sbjct: 286 YILRSLITHSGSVTY-GHYLCYRLQDDIWWKANDSLITKS 324
>DHAS_BACSU (Q04797) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 346 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +1 Query: 313 KIVHLPSLRIWAT*CPQCVEVPMWLTNAVSLYLPLPSDMCELSSFTVLVEESADTEL 483 KI+H+P L++ AT CV +P+ ++ S+Y+ + D + L++E+ L Sbjct: 228 KIMHMPDLQVAAT----CVRLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTL 280
>UBAP1_RAT (Q5XIS7) Ubiquitin-associated protein 1 (UBAP)| Length = 502 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -2 Query: 599 LQTLVSFGFPEDVSRMALKAXGGNIERATEWVFSH 495 ++T+V+ G+ D A+K G NIE+ +++F+H Sbjct: 396 VETVVNMGYSYDCVLRAMKKKGENIEQILDYLFAH 430
>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC| 3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific processing protease 8) (Deubiquitinating enzyme 8) Length = 449 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -2 Query: 407 YKLTAFVSHMGTSTHCGHYVAHILKDGRWTIFNDNKV--AASVDLPKDMGYLYFF 249 Y+L + V H GT GHY+A+ +W + +D + ++ YL F+ Sbjct: 379 YQLYSVVCHKGT-LDTGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAYLLFY 432
>UAS3_DROME (Q9VCE9) Protein UBASH3A homolog| Length = 751 Score = 30.0 bits (66), Expect = 6.1 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -2 Query: 599 LQTLVSFGFPEDVSRMALKAXGG-NIERATEWVFSH 495 LQTL+ GFP + AL + G ++ A++W+ +H Sbjct: 25 LQTLLQMGFPRHRAEKALASTGNRGVQIASDWLLAH 60
>UBP13_YEAST (P38187) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) Length = 688 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 410 RYKLTAFVSHMGTSTHCGHYVAHILKDGR--WTIFNDNKVAA 291 +Y+L V HMG GHYV+ + K + W +F+D V A Sbjct: 601 KYELAGIVVHMGGGPQHGHYVS-LCKHEKFGWLLFDDETVEA 641
>UBP15_MOUSE (Q8R5H1) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)| (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15) (Deubiquitinating enzyme 15) Length = 981 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = -2 Query: 419 GSGRYKLTAFVSHMGTSTHCGHYVAHILK--DGRWTIFNDNKV--AASVDLPKDMGYLYF 252 G RY L A +H G GHY A DG+W F+D+ V A+ + Y+ F Sbjct: 871 GPCRYNLIAVSNHYG-GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF 929 Query: 251 F 249 + Sbjct: 930 Y 930
>UBP15_HUMAN (Q9Y4E8) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)| (Ubiquitin thioesterase 15) (Ubiquitin-specific-processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) Length = 981 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = -2 Query: 419 GSGRYKLTAFVSHMGTSTHCGHYVAHILK--DGRWTIFNDNKV--AASVDLPKDMGYLYF 252 G RY L A +H G GHY A DG+W F+D+ V A+ + Y+ F Sbjct: 871 GPCRYNLIAVSNHYG-GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF 929 Query: 251 F 249 + Sbjct: 930 Y 930
>HEMK_VIBCH (Q9KQ26) Protein hemK homolog (EC 2.1.1.-) (M.VchAHemK2P)| Length = 286 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Frame = -2 Query: 446 KDDNSHISDGSGRYK----LTAFVSHMGTSTHCGHYVAHILKDGRWTIFN---DNKVAAS 288 ++++ H+S G R++ L A + + H + H L DG W +F D VA Sbjct: 193 EENDPHLSLGDVRFEPKSALVAAENGLADIRHISTHAPHFLLDGGWLLFEHGYDQGVAVR 252 Query: 287 VDLPKDMGY 261 L +D+GY Sbjct: 253 TIL-RDLGY 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,168,828 Number of Sequences: 219361 Number of extensions: 2024907 Number of successful extensions: 4772 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 4631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4757 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
