| Clone Name | rbags21g23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA sequence Length = 1200 Score = 866 bits (437), Expect = 0.0 Identities = 583/627 (92%), Gaps = 10/627 (1%) Strand = Plus / Minus Query: 18 cacatggtactaagccataaacgtaactgtaagttgccaatgcata--acgtctgaacca 75 ||||||||||||||| |||||||||| | |||||||||||||||| |||||||||||| Sbjct: 1080 cacatggtactaagc-ataaacgtaaagg-aagttgccaatgcatataacgtctgaacca 1023 Query: 76 acaaagcagtatcccgcatgatcagcctagaaaccagcacgtcaggatgcggcgaaatgg 135 ||||||| ||||||| | ||||||||||| | ||||||||||||||||| |||||| ||| Sbjct: 1022 acaaagcggtatcccacgtgatcagccta-agaccagcacgtcaggatgtggcgaagtgg 964 Query: 136 tcgcttcaagtcagatttgcaccaagagtccttcgaccatccgccatgctcccggatgat 195 ||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||| Sbjct: 963 tcgcttcaagtcagatttgca---atagtccttcgagcatccgccatgctcctggatgat 907 Query: 196 atgtgtgcatgaactatgacttcaaaccttctgctttaactgcttatnctntgaaagaaa 255 ||| ||||||||||| ||||||| |||||||| ||||||||||| || ||||||||| Sbjct: 906 atgcatgcatgaactacgacttcat--cttctgctctaactgcttatcctctgaaagaaa 849 Query: 256 tagaggtatcccatgtccttgggcaggtcaacagatgcagccaccttattgtcgttgaag 315 ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| Sbjct: 848 tagaggtatcccatgtccttgggcaggtcgaccgatgcagcaaccttattgtcattgaag 789 Query: 316 attgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtagaggtt 375 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 788 atcgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtagaggtt 729 Query: 376 cccatgtggctcacaaatgccgtcagcttgtatctgccacttccatctgatatgtgcgag 435 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 728 cccatgtggctcacaaatgccatcagcttgtatctgccacttccatctgatatgtgcgag 669 Query: 436 ttgtcatcttttacagtgcttgttgaagaatcagcagatacagagttagatgcttcaggg 495 | ||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||| Sbjct: 668 tcgtcatcttttacattgtttgttgaagagtcagcagatacagagctagatgcttcaggg 609 Query: 496 tggctgaaaacccactccgtggctctctcaatatttccaccanaagctttcaaggccatt 555 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 608 tggctgaaaacccactccgtggctctctcaatatttccaccggaagctttcaaggccatt 549 Query: 556 cgggaaacatcttctggaaagccaaaggaaacaagagtttgaagacttgcttcatcaata 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 cgggaaacatcttctggaaagccaaaggaaacaagagtttgaagacttgcttcatcaata 489 Query: 616 gtgtcttctgcangcattgnatnttga 642 |||||||||||| |||||| || |||| Sbjct: 488 gtgtcttctgcaggcattggatcttga 462
>ref|XM_550320.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2910 Score = 258 bits (130), Expect = 2e-65 Identities = 301/359 (83%) Strand = Plus / Minus Query: 240 tatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 299 ||| || ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448 Query: 300 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 359 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388 Query: 360 acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccacttcc 419 ||| || |||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||| Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatctgccacttcc 2328 Query: 420 atctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagatacaga 479 ||||| |||||| | | ||||||| | | |||||||||||||||||| || ||| || Sbjct: 2327 atctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatcagtaggtactga 2268 Query: 480 gttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccaccana 539 | || | || ||||||||||| |||| ||| || || |||||||| |||||||||||| | Sbjct: 2267 gctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgatatttccaccaga 2208 Query: 540 agctttcaaggccattcgggaaacatcttctggaaagccaaaggaaacaagagtttgaa 598 |||| ||||||| |||| | |||||||||| |||| || ||||||||||||||||||| Sbjct: 2207 agctgccaaggcctttcgagcaacatcttcttgaaatccgaaggaaacaagagtttgaa 2149
>dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full insert sequence Length = 2910 Score = 258 bits (130), Expect = 2e-65 Identities = 301/359 (83%) Strand = Plus / Minus Query: 240 tatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 299 ||| || ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448 Query: 300 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 359 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388 Query: 360 acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccacttcc 419 ||| || |||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||| Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatctgccacttcc 2328 Query: 420 atctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagatacaga 479 ||||| |||||| | | ||||||| | | |||||||||||||||||| || ||| || Sbjct: 2327 atctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatcagtaggtactga 2268 Query: 480 gttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccaccana 539 | || | || ||||||||||| |||| ||| || || |||||||| |||||||||||| | Sbjct: 2267 gctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgatatttccaccaga 2208 Query: 540 agctttcaaggccattcgggaaacatcttctggaaagccaaaggaaacaagagtttgaa 598 |||| ||||||| |||| | |||||||||| |||| || ||||||||||||||||||| Sbjct: 2207 agctgccaaggcctttcgagcaacatcttcttgaaatccgaaggaaacaagagtttgaa 2149
>gb|BT019035.1| Zea mays clone Contig552.F mRNA sequence Length = 1262 Score = 248 bits (125), Expect = 2e-62 Identities = 314/378 (83%) Strand = Plus / Minus Query: 236 tgcttatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 295 |||| || || ||||||||||||||||| ||||| ||||||||||||||||||||| | | Sbjct: 1034 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 975 Query: 296 ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 355 | ||||| ||||||| ||||||||||||||||| |||||||||| ||| || || |||| Sbjct: 974 cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 915 Query: 356 gcccacagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccac 415 |||| ||||| |||||||| ||||| |||||||| || ||| |||||||||||||||||| Sbjct: 914 gcccgcagtgggtagaggtgcccatatggctcacgaacgccatcagcttgtatctgccac 855 Query: 416 ttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagata 475 ||||||||| || | | || ||| | |||||| |||| || ||||||||||||||| Sbjct: 854 ttccatctggaatatatgtgtcatcagcatttacattgctagtggaagaatcagcagatg 795 Query: 476 cagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccac 535 | ||| |||||||||| ||||||||||||| ||| || || ||| |||| ||||| |||| Sbjct: 794 ctgaggtagatgcttcggggtggctgaaaatccagtctgtagctttctcgatattaccac 735 Query: 536 canaagctttcaaggccattcgggaaacatcttctggaaagccaaaggaaacaagagttt 595 || ||||||||| |||| || || || ||||| | || |||||||| | ||||||| Sbjct: 734 cagaagctttcagggcctttatggcaatgtcttcctggaatccaaaggagatgagagttt 675 Query: 596 gaagacttgcttcatcaa 613 ||| ||||||||| |||| Sbjct: 674 gaacacttgcttcgtcaa 657
>gb|AY105079.1| Zea mays PCO107820 mRNA sequence Length = 2648 Score = 248 bits (125), Expect = 2e-62 Identities = 314/378 (83%) Strand = Plus / Minus Query: 236 tgcttatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 295 |||| || || ||||||||||||||||| ||||| ||||||||||||||||||||| | | Sbjct: 2437 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 2378 Query: 296 ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 355 | ||||| ||||||| ||||||||||||||||| |||||||||| ||| || || |||| Sbjct: 2377 cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 2318 Query: 356 gcccacagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccac 415 |||| ||||| |||||||| ||||| |||||||| || ||| |||||||||||||||||| Sbjct: 2317 gcccgcagtgggtagaggtgcccatatggctcacgaacgccatcagcttgtatctgccac 2258 Query: 416 ttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagata 475 ||||||||| || | | || ||| | |||||| |||| || ||||||||||||||| Sbjct: 2257 ttccatctggaatatatgtgtcatcagcatttacattgctagtggaagaatcagcagatg 2198 Query: 476 cagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccac 535 | ||| |||||||||| ||||||||||||| ||| || || ||| |||| ||||| |||| Sbjct: 2197 ctgaggtagatgcttcggggtggctgaaaatccagtctgtagctttctcgatattaccac 2138 Query: 536 canaagctttcaaggccattcgggaaacatcttctggaaagccaaaggaaacaagagttt 595 || ||||||||| |||| || || || ||||| | || |||||||| | ||||||| Sbjct: 2137 cagaagctttcagggcctttatggcaatgtcttcctggaatccaaaggagatgagagttt 2078 Query: 596 gaagacttgcttcatcaa 613 ||| ||||||||| |||| Sbjct: 2077 gaacacttgcttcgtcaa 2060
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 2e-28 Identities = 144/170 (84%) Strand = Plus / Minus Query: 240 tatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 299 ||| || ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 3993995 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 3993936 Query: 300 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 359 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 3993935 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 3993876 Query: 360 acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatc 409 ||| || |||||||| ||||| ||||||||||| ||| ||| ||||||| Sbjct: 3993875 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatc 3993826 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Minus Query: 409 ctgccacttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatca 468 |||||||||||||||| |||||| | | ||||||| | | ||||||||||||||||| Sbjct: 3993373 ctgccacttccatctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatca 3993314 Query: 469 gcagatacagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaata 528 | || ||| ||| || | || ||||||||||| |||| ||| || || |||||||| ||| Sbjct: 3993313 gtaggtactgagctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgata 3993254 Query: 529 tttccacc 536 |||||||| Sbjct: 3993253 tttccacc 3993246 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 546 caaggccattcgggaaacatcttctggaaagccaaaggaaacaagagtttgaa 598 ||||||| |||| | |||||||||| |||| || ||||||||||||||||||| Sbjct: 3993026 caaggcctttcgagcaacatcttcttgaaatccgaaggaaacaagagtttgaa 3992974
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 135 bits (68), Expect = 2e-28 Identities = 144/170 (84%) Strand = Plus / Minus Query: 240 tatnctntgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 299 ||| || ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 115899 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 115840 Query: 300 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 359 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 115839 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 115780 Query: 360 acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatc 409 ||| || |||||||| ||||| ||||||||||| ||| ||| ||||||| Sbjct: 115779 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatc 115730 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Minus Query: 409 ctgccacttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatca 468 |||||||||||||||| |||||| | | ||||||| | | ||||||||||||||||| Sbjct: 115277 ctgccacttccatctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatca 115218 Query: 469 gcagatacagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaata 528 | || ||| ||| || | || ||||||||||| |||| ||| || || |||||||| ||| Sbjct: 115217 gtaggtactgagctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgata 115158 Query: 529 tttccacc 536 |||||||| Sbjct: 115157 tttccacc 115150 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 546 caaggccattcgggaaacatcttctggaaagccaaaggaaacaagagtttgaa 598 ||||||| |||| | |||||||||| |||| || ||||||||||||||||||| Sbjct: 114930 caaggcctttcgagcaacatcttcttgaaatccgaaggaaacaagagtttgaa 114878
>emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-185P18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163096 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 321 ccacctcccatctttgaggata 342 |||||||||||||||||||||| Sbjct: 135328 ccacctcccatctttgaggata 135349
>emb|AL512665.11| Human DNA sequence from clone RP11-88H9 on chromosome 1 Contains the 5' end of the KCND3 gen for potassium voltage-gated channel Shal-related subfamily member 3, two novel genes and two CpG islands, complete sequence Length = 169599 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 460 gaagaatcagcagatacagagttag 484 |||||||||| |||||||||||||| Sbjct: 119926 gaagaatcaggagatacagagttag 119950
>gb|AC121565.4| Mus musculus BAC clone RP23-223J11 from chromosome 6, complete sequence Length = 170000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 559 gaaacatcttctggaaagcca 579 ||||||||||||||||||||| Sbjct: 1716 gaaacatcttctggaaagcca 1736
>gb|AC173480.1| Mus musculus BAC clone RP23-422D12 from chromosome 6, complete sequence Length = 185966 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 559 gaaacatcttctggaaagcca 579 ||||||||||||||||||||| Sbjct: 20883 gaaacatcttctggaaagcca 20863
>gb|AC124441.5| Mus musculus BAC clone RP24-176L17 from chromosome 18, complete sequence Length = 190119 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gtagaggttcccatgtggct 386 |||||||||||||||||||| Sbjct: 146899 gtagaggttcccatgtggct 146880
>gb|AC122885.4| Mus musculus BAC clone RP23-90H14 from chromosome 14, complete sequence Length = 186387 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tgttgaagaatcagcagata 475 |||||||||||||||||||| Sbjct: 119865 tgttgaagaatcagcagata 119846
>emb|CR713366.2|CNS0GDDU Tetraodon nigroviridis full-length cDNA Length = 491 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 251 agaaatagaggtatcccatgtccttggg 278 |||| ||||||||||||||||| ||||| Sbjct: 65 agaagtagaggtatcccatgtctttggg 38
>ref|XM_962063.1| PREDICTED: Tribolium castaneum similar to CG12082-PA (LOC655510), mRNA Length = 2385 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 agccaccttattgtcgttgaagat 317 |||||||||||||||||| ||||| Sbjct: 2328 agccaccttattgtcgttaaagat 2305
>emb|AL714011.12| Mouse DNA sequence from clone RP23-380O17 on chromosome 4 Contains a CpG island, complete sequence Length = 166093 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 592 gtttgaagacttgcttcatcaatagtgt 619 ||||||||| |||||||||||| ||||| Sbjct: 146026 gtttgaagatttgcttcatcaaaagtgt 145999
>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence Length = 198295 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ccatgtccttgggcaggtca 285 |||||||||||||||||||| Sbjct: 120698 ccatgtccttgggcaggtca 120679
>gb|AC154618.2| Mus musculus BAC clone RP23-321M11 from chromosome 14, complete sequence Length = 209522 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgttgaagaatcagcagata 475 |||||||||||||||||||| Sbjct: 143082 tgttgaagaatcagcagata 143101
>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete sequence Length = 174983 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aatgcataacgtctgaacca 75 |||||||||||||||||||| Sbjct: 62564 aatgcataacgtctgaacca 62583
>gb|AC154584.3| Mus musculus BAC clone RP23-248M3 from chromosome 13, complete sequence Length = 166580 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cagatacagagttagatgct 489 |||||||||||||||||||| Sbjct: 61869 cagatacagagttagatgct 61850
>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174860 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccttctgctttaactgctta 241 |||||||||||||||||||| Sbjct: 104548 ccttctgctttaactgctta 104529
>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aaaccagcacgtcaggatgc 125 |||||||||||||||||||| Sbjct: 95282 aaaccagcacgtcaggatgc 95263
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 atgtccttgggcaggtcaac 287 |||||||||||||||||||| Sbjct: 1541008 atgtccttgggcaggtcaac 1541027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,158,220 Number of Sequences: 3902068 Number of extensions: 5158220 Number of successful extensions: 87785 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87697 Number of HSP's gapped (non-prelim): 83 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)