ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags21g18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026K14, full insert sequence Length = 2403 Score = 137 bits (69), Expect = 4e-29 Identities = 222/274 (81%), Gaps = 3/274 (1%) Strand = Plus / Minus Query: 196 aggcacgcgttcggctcctggcctgtgacttcccacttgaggttgaagcttttgacgagg 255 ||||| ||||| |||||||||||| | |||||||||||| ||||| |||| ||| || Sbjct: 1831 aggcatgcgtttggctcctggcctatagattcccacttgagcttgaaactttcgactaga 1772 Query: 256 ttcacttggtaggagatgatggtcgatggncngggcaggagctgcacgctctcccctttc 315 | ||| ||| | | ||||||| | | ||| | |||||| ||||||||||| || ||||| Sbjct: 1771 tccacctgggaagcgatgatgcttggtggtctgggcagtagctgcacgctttcacctttt 1712 Query: 316 gggatcactacctgctcgactgccagtcttgcttcctccagagcatcggtttcctctgat 375 ||||||||||| ||||||| ||||| ||| |||||||||| |||||| |||||||| || Sbjct: 1711 gggatcactacttgctcgattgccaatctagcttcctccaaagcatcagtttcctccgaa 1652 Query: 376 gatcttacttccaccttatcttcaacatcgatcaacccatccacgtgatcatcgacaagg 435 ||||| |||| | ||||||||| ||| |||||||||||| ||||||||| |||||| Sbjct: 1651 gatctcactt---cagtatcttcaaaatccatcaacccatccgtgtgatcatcaacaagg 1595 Query: 436 acgcgaagngccctggnaattngcaccagggagt 469 | ||||| ||||| ||| |||||||||||| Sbjct: 1594 gcacgaagtgcccttctgatttgcaccagggagt 1561
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 1e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 196 aggcacgcgttcggctcctggcctgtgacttcccacttgaggttgaagcttttgacgagg 255 ||||| ||||| |||||||||||| | |||||||||||| ||||| |||| ||| || Sbjct: 2866093 aggcatgcgtttggctcctggcctatagattcccacttgagcttgaaactttcgactaga 2866034 Query: 256 ttcacttggtaggagatgatggtcgatggncngggcaggagctgcacgctctcccctttc 315 | ||| ||| | | ||||||| | | ||| | |||||| ||||||||||| || ||||| Sbjct: 2866033 tccacctgggaagcgatgatgcttggtggtctgggcagtagctgcacgctttcacctttt 2865974 Query: 316 gggatcactacctgctcgactgccagtcttgcttcct 352 ||||||||||| ||||||| ||||| ||| ||||||| Sbjct: 2865973 gggatcactacttgctcgattgccaatctagcttcct 2865937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/78 (83%) Strand = Plus / Minus Query: 392 tatcttcaacatcgatcaacccatccacgtgatcatcgacaaggacgcgaagngccctgg 451 ||||||||| ||| |||||||||||| ||||||||| |||||| | ||||| ||||| Sbjct: 2865788 tatcttcaaaatccatcaacccatccgtgtgatcatcaacaagggcacgaagtgcccttc 2865729 Query: 452 naattngcaccagggagt 469 ||| |||||||||||| Sbjct: 2865728 tgatttgcaccagggagt 2865711
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 85.7 bits (43), Expect = 1e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 196 aggcacgcgttcggctcctggcctgtgacttcccacttgaggttgaagcttttgacgagg 255 ||||| ||||| |||||||||||| | |||||||||||| ||||| |||| ||| || Sbjct: 109574 aggcatgcgtttggctcctggcctatagattcccacttgagcttgaaactttcgactaga 109515 Query: 256 ttcacttggtaggagatgatggtcgatggncngggcaggagctgcacgctctcccctttc 315 | ||| ||| | | ||||||| | | ||| | |||||| ||||||||||| || ||||| Sbjct: 109514 tccacctgggaagcgatgatgcttggtggtctgggcagtagctgcacgctttcacctttt 109455 Query: 316 gggatcactacctgctcgactgccagtcttgcttcct 352 ||||||||||| ||||||| ||||| ||| ||||||| Sbjct: 109454 gggatcactacttgctcgattgccaatctagcttcct 109418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/78 (83%) Strand = Plus / Minus Query: 392 tatcttcaacatcgatcaacccatccacgtgatcatcgacaaggacgcgaagngccctgg 451 ||||||||| ||| |||||||||||| ||||||||| |||||| | ||||| ||||| Sbjct: 109269 tatcttcaaaatccatcaacccatccgtgtgatcatcaacaagggcacgaagtgcccttc 109210 Query: 452 naattngcaccagggagt 469 ||| |||||||||||| Sbjct: 109209 tgatttgcaccagggagt 109192
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 85.7 bits (43), Expect = 1e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 196 aggcacgcgttcggctcctggcctgtgacttcccacttgaggttgaagcttttgacgagg 255 ||||| ||||| |||||||||||| | |||||||||||| ||||| |||| ||| || Sbjct: 26239 aggcatgcgtttggctcctggcctatagattcccacttgagcttgaaactttcgactaga 26180 Query: 256 ttcacttggtaggagatgatggtcgatggncngggcaggagctgcacgctctcccctttc 315 | ||| ||| | | ||||||| | | ||| | |||||| ||||||||||| || ||||| Sbjct: 26179 tccacctgggaagcgatgatgcttggtggtctgggcagtagctgcacgctttcacctttt 26120 Query: 316 gggatcactacctgctcgactgccagtcttgcttcct 352 ||||||||||| ||||||| ||||| ||| ||||||| Sbjct: 26119 gggatcactacttgctcgattgccaatctagcttcct 26083 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/78 (83%) Strand = Plus / Minus Query: 392 tatcttcaacatcgatcaacccatccacgtgatcatcgacaaggacgcgaagngccctgg 451 ||||||||| ||| |||||||||||| ||||||||| |||||| | ||||| ||||| Sbjct: 25934 tatcttcaaaatccatcaacccatccgtgtgatcatcaacaagggcacgaagtgcccttc 25875 Query: 452 naattngcaccagggagt 469 ||| |||||||||||| Sbjct: 25874 tgatttgcaccagggagt 25857
>gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, complete sequence Length = 230772 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 gaggaagggtagcctggtgag 92 ||||||||||||||||||||| Sbjct: 126864 gaggaagggtagcctggtgag 126844
>emb|AL162503.12| Human DNA sequence from clone RP11-420F12 on chromosome 10 Contains the GAD2 gene for glutamate decarboxylase 2 (pancreatic islets and brain 65kDa), the 3' end of the MYO3A gene for myosin IIIA and two CpG islands, complete sequence Length = 175594 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 agaagaggcacacggcaaagg 40 ||||||||||||||||||||| Sbjct: 20258 agaagaggcacacggcaaagg 20278 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,916,203 Number of Sequences: 3902068 Number of extensions: 2916203 Number of successful extensions: 49339 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49299 Number of HSP's gapped (non-prelim): 40 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
