ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21g15 |
|---|---|
| Clone Library Name | barley_pub |
>CSBC_BACSU (P46333) Probable metabolite transport protein csbC| Length = 461 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQASIN**FK 422 F+ +C L+ F VPETKGK++EEI+AS+ FK Sbjct: 411 FSVICLLSFFFAFYMVPETKGKSLEEIEASLKKRFK 446
>GTR8_MOUSE (Q9JIF3) Solute carrier family 2, facilitated glucose transporter| member 8 (Glucose transporter type 8) (Glucose transporter type X1) Length = 477 Score = 37.0 bits (84), Expect = 0.038 Identities = 15/28 (53%), Positives = 23/28 (82%) Frame = +3 Query: 318 ASVCALAILFIVKNVPETKGKTVEEIQA 401 A+ CAL++LF + VPETKG+T+E++ A Sbjct: 445 AAFCALSVLFTLTVVPETKGRTLEQVTA 472
>GTR8_RAT (Q9JJZ1) Solute carrier family 2, facilitated glucose transporter| member 8 (Glucose transporter type 8) (Glucose transporter type X1) Length = 478 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = +3 Query: 318 ASVCALAILFIVKNVPETKGKTVEEIQA 401 A+ C L++LF + VPETKG+T+E+I A Sbjct: 446 AAFCILSVLFTLTFVPETKGRTLEQITA 473
>GTR6_HUMAN (Q9UGQ3) Solute carrier family 2, facilitated glucose transporter| member 6 (Glucose transporter type 6) (Glucose transporter type 9) Length = 507 Score = 35.0 bits (79), Expect = 0.15 Identities = 13/30 (43%), Positives = 25/30 (83%) Frame = +3 Query: 312 FFASVCALAILFIVKNVPETKGKTVEEIQA 401 FFA++C ++++F VPETKG+++E+I++ Sbjct: 467 FFAAICLVSLVFTGCCVPETKGRSLEQIES 496
>YFIG_BACSU (P54723) Hypothetical metabolite transport protein yfiG| Length = 482 Score = 35.0 bits (79), Expect = 0.15 Identities = 15/30 (50%), Positives = 24/30 (80%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQAS 404 F ++ LAILF+ K VPETKG+++E+++ S Sbjct: 433 FVAMNILAILFVKKYVPETKGRSLEQLEHS 462
>XYLE_ECOLI (P0AGF4) D-xylose-proton symporter (D-xylose transporter)| Length = 491 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = +3 Query: 333 LAILFIVKNVPETKGKTVEEIQA 401 LA LF+ K VPETKGKT+EE++A Sbjct: 454 LAALFMWKFVPETKGKTLEELEA 476
>XYLE_ECO57 (P0AGF5) D-xylose-proton symporter (D-xylose transporter)| Length = 491 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = +3 Query: 333 LAILFIVKNVPETKGKTVEEIQA 401 LA LF+ K VPETKGKT+EE++A Sbjct: 454 LAALFMWKFVPETKGKTLEELEA 476
>GTR8_HUMAN (Q9NY64) Solute carrier family 2, facilitated glucose transporter| member 8 (Glucose transporter type 8) (Glucose transporter type X1) Length = 477 Score = 33.5 bits (75), Expect = 0.43 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 318 ASVCALAILFIVKNVPETKGKTVEEIQA 401 ++ C ++LF VPETKGKT+E+I A Sbjct: 445 SAFCIFSVLFTFSCVPETKGKTLEQITA 472
>GTR8_BOVIN (P58354) Solute carrier family 2, facilitated glucose transporter| member 8 (Glucose transporter type 8) (Glucose transporter type X1) Length = 478 Score = 33.5 bits (75), Expect = 0.43 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 318 ASVCALAILFIVKNVPETKGKTVEEIQA 401 ++ C +LF + VPETKGKT+E+I A Sbjct: 446 SAFCIFGVLFTLACVPETKGKTLEQITA 473
>GTR5_HORSE (Q863Y9) Solute carrier family 2, facilitated glucose transporter| member 5 (Glucose transporter type 5, small intestine) (Fructose transporter) Length = 501 Score = 32.7 bits (73), Expect = 0.73 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEI 395 FA +C L ++I VPETKGKT EI Sbjct: 445 FAVICLLTTIYIFLIVPETKGKTFVEI 471
>GTR5_MOUSE (Q9WV38) Solute carrier family 2, facilitated glucose transporter| member 5 (Glucose transporter type 5, small intestine) (Fructose transporter) Length = 501 Score = 32.3 bits (72), Expect = 0.95 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEI 395 FA++C L ++I VPETKG+T EI Sbjct: 444 FATICFLTTIYIFMVVPETKGRTFIEI 470
>MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-inositol| cotransporter) (Hmit) Length = 629 Score = 32.3 bits (72), Expect = 0.95 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 +A A+ +LFI +PETKGK +EEI++ Sbjct: 560 YAGFAAVGLLFIYGCLPETKGKKLEEIES 588
>MYCT_RAT (Q921A2) Proton myo-inositol cotransporter (H(+)-myo-inositol| cotransporter) (Hmit) Length = 618 Score = 32.0 bits (71), Expect = 1.2 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 +A A+ +LF+ +PETKGK +EEI++ Sbjct: 549 YAGFAAVGLLFVYGCLPETKGKKLEEIES 577
>GTR5_RAT (P43427) Solute carrier family 2, facilitated glucose transporter| member 5 (Glucose transporter type 5, small intestine) (Fructose transporter) Length = 502 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEI 395 FA +C L ++I VPETKG+T EI Sbjct: 444 FAIICLLTTIYIFMVVPETKGRTFVEI 470
>GTR2_PIG (O62786) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) (Fragment) Length = 120 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 FA V + LF VPETKGK+ EEI A Sbjct: 92 FAGVVLVFTLFTFFKVPETKGKSFEEIAA 120
>GTR2_MOUSE (P14246) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) Length = 523 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 FA V + LF VPETKGK+ EEI A Sbjct: 468 FAGVVLVFTLFTFFKVPETKGKSFEEIAA 496
>ARAE_BACSU (P96710) Arabinose-proton symporter (Arabinose transporter)| Length = 464 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQ 398 FA + L LF+V PETK K++EEI+ Sbjct: 432 FAVINILCFLFVVTICPETKNKSLEEIE 459
>YB91_YEAST (P38142) Probable metabolite transport protein YBR241C| Length = 488 Score = 30.8 bits (68), Expect = 2.8 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKT 383 FA++ A+ ++ K VPETKGKT Sbjct: 457 FAAIAAMFATYVYKRVPETKGKT 479
>STP10_ARATH (Q9LT15) Sugar transport protein 10 (Hexose transporter 10)| Length = 514 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 312 FFASVCALAILFIVKNVPETKGKTVEEI 395 FFAS+ A+ +FI +PETKG +EE+ Sbjct: 458 FFASMVAIMTVFIYFLLPETKGVPIEEM 485
>QUTD_EMENI (P15325) Quinate permease (Quinate transporter)| Length = 533 Score = 30.8 bits (68), Expect = 2.8 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +3 Query: 312 FFASVCALAILFIVKNVPETKGKTVEEIQ 398 FFAS+ L+I+F+ +PETKG +E ++ Sbjct: 459 FFASLMILSIVFVFFLIPETKGVPLESME 487
>GTR2_HUMAN (P11168) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) Length = 524 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 FA V LF VPETKGK+ EEI A Sbjct: 469 FAGVLLAFTLFTFFKVPETKGKSFEEIAA 497
>GTR2_CHICK (Q90592) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) Length = 533 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQAS 404 FA + + LF VPETKGK+ EEI A+ Sbjct: 481 FAVLLLVFFLFAYLKVPETKGKSFEEIAAA 510
>GTR5_HUMAN (P22732) Solute carrier family 2, facilitated glucose transporter| member 5 (Glucose transporter type 5, small intestine) (Fructose transporter) Length = 501 Score = 30.0 bits (66), Expect = 4.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEI 395 FA +C L ++I VPETK KT EI Sbjct: 445 FAVICLLTTIYIFLIVPETKAKTFIEI 471
>GTR2_RAT (P12336) Solute carrier family 2, facilitated glucose transporter| member 2 (Glucose transporter type 2, liver) Length = 522 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQA 401 FA V + LF VPETKGK+ +EI A Sbjct: 467 FAGVVLVFTLFTFFKVPETKGKSFDEIAA 495
>GLF_ZYMMO (P21906) Glucose facilitated diffusion protein| Length = 473 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +3 Query: 315 FASVCALAILFIVKNVPETKGKTVEEIQ 398 FA++ L L + + VPETKG++++EI+ Sbjct: 439 FAALSILGGLIVARFVPETKGRSLDEIE 466
>NCA12_XENLA (P36335) Neural cell adhesion molecule 1-B precursor| Length = 1092 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +3 Query: 306 TCFFASVCAL----AILFIVKNVPETKGKTVEEIQASIN 410 TCFF + C L A+ F K P KGK +EE +A+ + Sbjct: 726 TCFFLNKCGLLMCIAVNFCGKAGPGAKGKDIEEGKAAFS 764
>NCA11_XENLA (P16170) Neural cell adhesion molecule 1-A precursor| Length = 1088 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +3 Query: 306 TCFFASVCAL----AILFIVKNVPETKGKTVEEIQASIN 410 TCFF + C L A+ F K P KGK +EE +A+ + Sbjct: 726 TCFFLNKCGLLMCIAVNFCGKAGPGAKGKDIEEGKAAFS 764
>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)| Length = 3103 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 332 PGYSVHCEERARDKRQDRGRDSGFNKLII*TMSGLAISR 448 PG V C RA D GR+ N ++I T G+ + R Sbjct: 2432 PGSRVQCVARAVGSEGDAGREHPSNSIVISTTDGMCMPR 2470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,208,217 Number of Sequences: 219361 Number of extensions: 1608553 Number of successful extensions: 3411 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3411 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
