>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                          
Query: 345    ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 404
              ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 140781 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 140840

                
Query: 405    at 406
              ||
Sbjct: 140841 at 140842



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                          
Query: 452    ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaggaactc 511
              ||||||||||||||||||||||||| ||| | |||| || |||||||||| |||||| ||
Sbjct: 141641 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 141700

                 
Query: 512    ctg 514
              |||
Sbjct: 141701 ctg 141703



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 511    cctgtaactgctgctggctgaacaagtgcatcatcccanaatctgatgaagcaac 565
              |||| |||||||| ||||||||||| ||||| || ||| | || |||||||||||
Sbjct: 141786 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaagcaac 141840

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 345      ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 404
                ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 24681707 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 24681648

                  
Query: 405      at 406
                ||
Sbjct: 24681647 at 24681646



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 452      ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaggaactc 511
                ||||||||||||||||||||||||| ||| | |||| || |||||||||| |||||| ||
Sbjct: 24680847 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 24680788

                   
Query: 512      ctg 514
                |||
Sbjct: 24680787 ctg 24680785



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 511      cctgtaactgctgctggctgaacaagtgcatcatcccanaatctgatgaagcaac 565
                |||| |||||||| ||||||||||| ||||| || ||| | || |||||||||||
Sbjct: 24680702 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaagcaac 24680648

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 345      ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 404
                ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 24993377 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 24993318

                  
Query: 405      at 406
                ||
Sbjct: 24993317 at 24993316



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 452      ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaggaactc 511
                ||||||||||||||||||||||||| ||| | |||| || |||||||||| |||||| ||
Sbjct: 24992517 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 24992458

                   
Query: 512      ctg 514
                |||
Sbjct: 24992457 ctg 24992455



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 511      cctgtaactgctgctggctgaacaagtgcatcatcccanaatctgatgaagcaac 565
                |||| |||||||| ||||||||||| ||||| || ||| | || |||||||||||
Sbjct: 24992372 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaagcaac 24992318

>gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosome 8, complete sequence
          Length = 191336

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 319   cctctgtttgtgccctggctattctg 344
             ||||||||| ||||||||||||||||
Sbjct: 32847 cctctgtttttgccctggctattctg 32872

>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 319    cctctgtttgtgccctggctattctg 344
              ||||||||| ||||||||||||||||
Sbjct: 187405 cctctgtttttgccctggctattctg 187430

>ref|NM_180250.1| Arabidopsis thaliana unknown protein AT3G14120 transcript variant
            AT3G14120.2 mRNA, complete cds
          Length = 3596

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 487  actccctctcaaaaatcaggaactcctgtaactgctgctggctgaacaa 535
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3366 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3318

>ref|NM_112268.2| Arabidopsis thaliana unknown protein AT3G14120 transcript variant
            AT3G14120.1 mRNA, complete cds
          Length = 3668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 487  actccctctcaaaaatcaggaactcctgtaactgctgctggctgaacaa 535
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3438 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3390

>gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, complete sequence
          Length = 141824

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    catgcttctttgcctctgttt 327
              |||||||||||||||||||||
Sbjct: 117727 catgcttctttgcctctgttt 117707

>gb|AY139761.1| Arabidopsis thaliana AT3g14120/MAG2_7 mRNA, complete cds
          Length = 3669

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 487  actccctctcaaaaatcaggaactcctgtaactgctgctggctgaacaa 535
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3438 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3390

>gb|AC118556.2| Homo sapiens chromosome 1 clone RP11-421I6, complete sequence
          Length = 9890

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 307  catgcttctttgcctctgttt 327
            |||||||||||||||||||||
Sbjct: 9764 catgcttctttgcctctgttt 9784

>gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, complete sequence
          Length = 159838

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    catgcttctttgcctctgttt 327
              |||||||||||||||||||||
Sbjct: 159100 catgcttctttgcctctgttt 159080

>gb|BT006367.1| Arabidopsis thaliana AT3g14120/MAG2_7 gene, complete cds
          Length = 3234

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 487  actccctctcaaaaatcaggaactcctgtaactgctgctggctgaacaa 535
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3187 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3139

>emb|BX822747.1|CNS0A4PQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB61ZB11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2006

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 487  actccctctcaaaaatcaggaactcctgtaactgctgctggctgaacaa 535
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 1760 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 1712

>gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target subunit 2 (MYPT2) gene, exons 11
              through 24, and complete cds
          Length = 150000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    catgcttctttgcctctgttt 327
              |||||||||||||||||||||
Sbjct: 149633 catgcttctttgcctctgttt 149613

>gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y, complete sequence
          Length = 171834

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    catgcttctttgcctctgttt 327
              |||||||||||||||||||||
Sbjct: 132625 catgcttctttgcctctgttt 132605

>gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, complete sequence
          Length = 184959

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 309   tgcttctttgcctctgtttgt 329
             |||||||||||||||||||||
Sbjct: 45874 tgcttctttgcctctgtttgt 45894

>gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, complete sequence
          Length = 172121

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gtttttgtctaatacatgaa 231
             ||||||||||||||||||||
Sbjct: 71163 gtttttgtctaatacatgaa 71144

>gb|DQ165379.1| Dendroctonus rufipennis microsatellite 54 sequence
          Length = 170

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 cttctttgcctctgtttgtg 330
           ||||||||||||||||||||
Sbjct: 43  cttctttgcctctgtttgtg 24

>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence
          Length = 191753

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   tgctgctggctgaacaagtg 538
             ||||||||||||||||||||
Sbjct: 27236 tgctgctggctgaacaagtg 27255

>gb|AC162295.3| Mus musculus chromosome 1, clone RP24-232K22, complete sequence
          Length = 180957

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gtttttgtctaatacatgaa 231
             ||||||||||||||||||||
Sbjct: 22892 gtttttgtctaatacatgaa 22911

>gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complete sequence
          Length = 79475

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   ctccattttacatatgaagc 486
             ||||||||||||||||||||
Sbjct: 66247 ctccattttacatatgaagc 66228

>gb|AY643071.1| Capnocytophaga canimorsus strain 24231 RNA polymerase beta subunit
           (rpoB) gene, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 gagattcaggcttcaataaa 409
           ||||||||||||||||||||
Sbjct: 564 gagattcaggcttcaataaa 545

>gb|AY643069.1| Capnocytophaga canimorsus strain CIP 103936 RNA polymerase beta
           subunit (rpoB) gene, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 gagattcaggcttcaataaa 409
           ||||||||||||||||||||
Sbjct: 564 gagattcaggcttcaataaa 545

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 482     gaagcactccctctcaaaaa 501
               ||||||||||||||||||||
Sbjct: 5555116 gaagcactccctctcaaaaa 5555135

>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   ctgctcttcctcaagctcca 471
             ||||||||||||||||||||
Sbjct: 77362 ctgctcttcctcaagctcca 77381

>gb|BC025667.1| Homo sapiens, clone IMAGE:5200887, mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 452  ctgctcttcctcaagctcca 471
            ||||||||||||||||||||
Sbjct: 1253 ctgctcttcctcaagctcca 1272

>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   ctgctcttcctcaagctcca 471
             ||||||||||||||||||||
Sbjct: 22767 ctgctcttcctcaagctcca 22748

>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   ctgctcttcctcaagctcca 471
             ||||||||||||||||||||
Sbjct: 31829 ctgctcttcctcaagctcca 31810

>gb|AC025423.32| Homo sapiens 12 BAC RP11-611O2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150579

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   ataatttaaaccatgagtgg 432
             ||||||||||||||||||||
Sbjct: 47270 ataatttaaaccatgagtgg 47251

>emb|AL109985.5|CNS018P2 Human chromosome 14 DNA sequence BAC R-370E23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 186548

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tgtgaagaacgtgccagaga 369
             ||||||||||||||||||||
Sbjct: 35621 tgtgaagaacgtgccagaga 35602

>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   gaagcactccctctcaaaaa 501
             ||||||||||||||||||||
Sbjct: 12323 gaagcactccctctcaaaaa 12342

>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
              complete sequence
          Length = 150283

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    gaagcactccctctcaaaaa 501
              ||||||||||||||||||||
Sbjct: 109746 gaagcactccctctcaaaaa 109765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,174,305
Number of Sequences: 3902068
Number of extensions: 5174305
Number of successful extensions: 101351
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101212
Number of HSP's gapped (non-prelim): 139
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)