ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags21g12 |
|---|---|
| Clone Library Name | barley_pub |
>APH1_ARATH (Q8L9G7) Gamma-secretase subunit APH1-like| Length = 250 Score = 157 bits (398), Expect = 2e-38 Identities = 77/138 (55%), Positives = 100/138 (72%) Frame = -3 Query: 634 LTDKMLISXXXXXXXXXXXAVFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLV 455 LTDK+ I+ AVFFCLSLLTPAFG ATFYVERCS++PFFL+SAII+L F+ Sbjct: 110 LTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVT 169 Query: 454 IHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVMTLINLVPGGCLIGTPLLCVTAAMTLY 275 IHT SM+IAF GY + K DQI VPV+HL A ++TL+N GC+IG PLL + A++TL Sbjct: 170 IHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLV 229 Query: 274 HSWRVVGQRITEQQHRQS 221 H ++V QR+ E +++ S Sbjct: 230 HCGKMVWQRLLESRNQSS 247
>APH1B_PONPY (Q5RDM3) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| Length = 257 Score = 34.3 bits (77), Expect = 0.32 Identities = 22/78 (28%), Positives = 41/78 (52%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF ++ L+ + G T + S FFL SA ++L +++H I+ F+G ++K Sbjct: 130 VFSFVNTLSDSLGPGTVGIHGDSPQ-FFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGI 188 Query: 394 QIFVPVVHLIAAVMTLIN 341 + V + HL+ + T I+ Sbjct: 189 LLIVLLTHLLVSAQTFIS 206
>APH1B_HUMAN (Q8WW43) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| (Presenilin-stabilization factor-like) Length = 257 Score = 34.3 bits (77), Expect = 0.32 Identities = 22/78 (28%), Positives = 41/78 (52%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF ++ L+ + G T + S FFL SA ++L +++H I+ F+G ++K Sbjct: 130 VFSFVNTLSDSLGPGTVGIHGDSPQ-FFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGI 188 Query: 394 QIFVPVVHLIAAVMTLIN 341 + V + HL+ + T I+ Sbjct: 189 LLIVLLTHLLVSAQTFIS 206
>APH1_DROME (Q9VQG2) Gamma-secretase subunit Aph-1 (Presenilin-stabilization| factor) Length = 238 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/78 (25%), Positives = 40/78 (51%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 +F +++L G T ++ + + FF+ SA +L +++HT +I FN + Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIH 179 Query: 394 QIFVPVVHLIAAVMTLIN 341 +V HL +++TL+N Sbjct: 180 IGYVVFSHLFVSLITLLN 197
>APH1A_MOUSE (Q8BVF7) Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)| Length = 265 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/100 (25%), Positives = 47/100 (47%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF +++L A G + S +FL SA ++ +++HT ++ F+ R+ Sbjct: 131 VFSVINILADALGPGVVGIHGDSPY-YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWA 189 Query: 394 QIFVPVVHLIAAVMTLINLVPGGCLIGTPLLCVTAAMTLY 275 V HL+ + +T +N L+ P+ VT +M L+ Sbjct: 190 LGLVVGSHLLTSGLTFLNPWYEASLL--PIYAVTVSMGLW 227
>APH1A_HUMAN (Q96BI3) Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)| (Presenilin-stabilization factor) Length = 265 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/100 (25%), Positives = 47/100 (47%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF +++L A G + S +FL SA ++ +++HT ++ F+ R+ Sbjct: 131 VFSVINILADALGPGVVGIHGDSPY-YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWA 189 Query: 394 QIFVPVVHLIAAVMTLINLVPGGCLIGTPLLCVTAAMTLY 275 V HL+ + +T +N L+ P+ VT +M L+ Sbjct: 190 LGLVVGSHLLTSGLTFLNPWYEASLL--PIYAVTVSMGLW 227
>APH1B_MOUSE (Q8C7N7) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| Length = 257 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/78 (25%), Positives = 40/78 (51%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF ++ L+ + G T + S FFL SA ++L +++H ++ F+G + K Sbjct: 130 VFSFVNTLSNSLGPGTVGIHGDSPQ-FFLNSAFMTLVVIMLHVFWGVVFFDGCEKNKWYT 188 Query: 394 QIFVPVVHLIAAVMTLIN 341 + V + HL+ + T ++ Sbjct: 189 LLTVLLTHLVVSTQTFLS 206
>APH1C_MOUSE (Q9DCZ9) Putative gamma-secretase subunit APH-1C| Length = 258 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/78 (25%), Positives = 40/78 (51%) Frame = -3 Query: 574 VFFCLSLLTPAFGRATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRD 395 VF ++ L+ + G T + S FFL SA ++L +++H ++ F+G + K Sbjct: 131 VFSFVNTLSNSLGPGTVGIHGDSPQ-FFLNSAFMTLVVIMLHVFWGVVFFDGCEKNKWYT 189 Query: 394 QIFVPVVHLIAAVMTLIN 341 + V + HL+ + T ++ Sbjct: 190 LLTVLLTHLVVSTQTFLS 207
>VATI_METTH (O27041) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 658 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/69 (28%), Positives = 37/69 (53%) Frame = -3 Query: 475 ISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVMTLINLVPGGCLIGTPLLCV 296 +++G L I+ ++ A N R+ + +V LI + ++ LV GG + G PL+ + Sbjct: 480 LTVGVLHINFGLILGARNNIRLGNMREALGSQIVWLILELGIILYLV-GGMIFGAPLIIL 538 Query: 295 TAAMTLYHS 269 AM LY++ Sbjct: 539 AFAMLLYYN 547
>G137B_HUMAN (O60478) Protein GPR137B (Transmembrane 7 superfamily member 1)| Length = 399 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Frame = -3 Query: 571 FFCLSLLTPAFGRATFYVERCS-------RMPFFLVSAIISLGFLVIHTSSMIIAFNGYG 413 FF L+L+ F + F + R+P +L S ISL FL+++ + ++ G Sbjct: 126 FFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLVKTGNW 185 Query: 412 ERK 404 ERK Sbjct: 186 ERK 188
>ISP3_SCHPO (P40899) Sexual differentiation process protein isp3 (Meiotic| expression up-regulated protein 4) Length = 182 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -2 Query: 407 KEERPNFCPSGSPDCCCNDVNQPCARR--LPHRYTFT------VCDSCDD 282 ++++P C P CC ++ N C RR L R F CD C++ Sbjct: 81 EKKKPKCCEKKKPKCCESEQNNGCGRRNQLARRLAFLGSFGDGDCDGCNE 130
>PHOSP_PI1HC (P28054) Phosphoprotein (Protein P)| Length = 568 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 60 PPIIRASDSRGHRSTRSGLHKMTSPLASGKTTRSTYSCP 176 P IIR + +R R+ S LHK TS +S +T + P Sbjct: 231 PTIIRRNQTRSERTQNSELHKSTSENSSNLEDHNTKTSP 269
>PHOSP_PI1HB (P32530) Phosphoprotein (Protein P)| Length = 568 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 60 PPIIRASDSRGHRSTRSGLHKMTSPLASGKTTRSTYSCP 176 P IIR + +R R+ S LHK TS +S +T + P Sbjct: 231 PTIIRRNQTRSERTQNSELHKSTSENSSNLEDHNTKTSP 269 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,510,147 Number of Sequences: 219361 Number of extensions: 1872432 Number of successful extensions: 4652 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4652 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
