| Clone Name | rbags21g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 1905 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1846 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1845 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1786 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1785 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1726 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1725 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1666 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1665 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1606 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1605 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1546 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1545 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1486 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 1485 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 1426 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 1425 gatcactgcctccgtctcac 1406
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 42311 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 42252 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 42251 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 42192 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 42191 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 42132 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 42131 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 42072 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 42071 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 42012 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 42011 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 41952 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 41951 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 41892 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 41891 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 41832 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 41831 gatcactgcctccgtctcac 41812
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 16163422 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16163363 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 16163362 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16163303 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 16163302 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16163243 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 16163242 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16163183 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 16163182 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16163123 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 16163122 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16163063 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 16163062 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16163003 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 16163002 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 16162943 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 16162942 gatcactgcctccgtctcac 16162923
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 2008 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1949 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1948 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1889 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1888 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1829 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1828 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1769 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1768 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1709 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1708 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1649 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1648 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1589 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 1588 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 1529 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 1528 gatcactgcctccgtctcac 1509
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 1948 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1889 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1888 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1829 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1828 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1769 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1768 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1709 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1708 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1649 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1648 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1589 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1588 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1529 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 1528 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 1469 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 1468 gatcactgcctccgtctcac 1449
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 309 bits (156), Expect = 7e-81 Identities = 414/500 (82%) Strand = Plus / Minus Query: 217 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgattgtctccaacttcct 276 ||||||||||||||||| |||||| || || || || ||| ||| ||||||||| ||||| Sbjct: 16171663 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16171604 Query: 277 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 336 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 16171603 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16171544 Query: 337 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 396 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 16171543 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16171484 Query: 397 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 456 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 16171483 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16171424 Query: 457 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 516 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 16171423 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16171364 Query: 517 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 576 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 16171363 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16171304 Query: 577 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 636 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 16171303 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16171244 Query: 637 aatggcagacacaatctccatcaagcggcgcgacttccacaagaaatgccatggccgttt 696 |||||||||||| ||||||||||| || ||||| |||||||| |||| |||||| || || Sbjct: 16171243 aatggcagacacgatctccatcaatcgacgcgatttccacaataaataccatgggcgctt 16171184 Query: 697 gatcatggcctctgtctcac 716 ||||| ||||| ||||||| Sbjct: 16171183 gatcactgcctccgtctcac 16171164
>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence Length = 888 Score = 297 bits (150), Expect = 3e-77 Identities = 442/541 (81%) Strand = Plus / Plus Query: 176 tcagctcaccttactcaaccaggtattcaggaggaggctgcgcatgtattgacaccatcc 235 ||||||||||||| | |||| | ||||||| || |||| ||||||||| || |||||| Sbjct: 222 tcagctcaccttagcccaccaaatgttcaggaagaagctgagcatgtattcacgccatcc 281 Query: 236 ttgcagtcgcgtgttaggtcattgattgtctccaacttcctcttccccctgaggaacacc 295 ||||| || ||||| || || |||| |||||||| | |||||| | | ||| ||| Sbjct: 282 ttgcaatcacgtgtaagctcgttgaatgtctccacatgcctcttnnnnntcaagaatacc 341 Query: 296 tcagtgtcgactgcaaccctcatgtaaccatcgaactccaccggtttgccattgttgagc 355 |||||||| ||||||| |||||| || ||||| || || || || | |||||| | ||| Sbjct: 342 tcagtgtcaactgcaatcctcatatagccatcaaattctactggctgaccattgctcagc 401 Query: 356 tccttagtttcagcataccagtcactattttcatcccaaagatccttgaaatcatccagg 415 ||||||||||||| |||| |||||||| |||||||| || | |||||||||||| ||| Sbjct: 402 tccttagtttcagtgaaccactcactattctcatcccacaggtacttgaaatcatcaagg 461 Query: 416 aaacgcgtcttgtacttgttcttcagcgggtcgaagaacgatttatcggactcatcggta 475 || | || || ||||| | ||| || |||| ||||||||||| || | |||| |||| Sbjct: 462 aagtgtgttttatacttttccttgagtgggttaaagaacgatttgtcaggttcattggta 521 Query: 476 gcaatgtacaaataccgtccagcaccaaccttatcattgagtgtcgtaaggagattttct 535 ||||||||||||||||| |||||||||||||||||||| |||| | |||||||| | ||| Sbjct: 522 gcaatgtacaaataccggccagcaccaaccttatcattaagtgccataaggagactgtct 581 Query: 536 ggcgaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctc 595 || ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 582 ggtgaggtatctctgtcaaggtttggccaaagttgtgtgttctgcgctttctcccctctg 641 Query: 596 acaacatgcatcgagtcgaaatcccaactcattcgggaggcaatggcagacacaatctcc 655 |||||||| | |||||| || ||||| |||| || |||||||||||||| ||||||||| Sbjct: 642 acaacatggaccgagtcaaagtcccagttcatccgtgaggcaatggcagatacaatctcc 701 Query: 656 atcaagcggcgcgacttccacaagaaatgccatggccgtttgatcatggcctctgtctca 715 |||||||| || || ||||||| |||||||||||| || ||||| || |||| |||||| Sbjct: 702 atcaagcgacgagatttccacaggaaatgccatgggcgcttgattattccctcagtctca 761 Query: 716 c 716 | Sbjct: 762 c 762
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE Length = 111128 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 539 gaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctcaca 598 ||||||| ||||||||| ||||||||||||| | ||||| || || |||||||||||| Sbjct: 20763 gaggtatgtgcatcaagatttggccaaagctctttgttcctcgccttttctcctctcaca 20704 Query: 599 acatg 603 ||||| Sbjct: 20703 acatg 20699
>dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-792P2, complete sequence Length = 50359 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 259 gattgtctccaacttcctcttcc 281 ||||||||||||||||||||||| Sbjct: 39280 gattgtctccaacttcctcttcc 39302
>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152737 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 373 ccagtcactattttcatcccaa 394 |||||||||||||||||||||| Sbjct: 94894 ccagtcactattttcatcccaa 94915
>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence Length = 183917 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 ccagtcactattttcatcccaa 394 |||||||||||||||||||||| Sbjct: 35054 ccagtcactattttcatcccaa 35033
>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8, complete sequence Length = 153753 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 cgtgaatgaattaagtaaact 55 ||||||||||||||||||||| Sbjct: 691 cgtgaatgaattaagtaaact 671
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 cgtgaatgaattaagtaaact 55 ||||||||||||||||||||| Sbjct: 149875 cgtgaatgaattaagtaaact 149855
>gb|AC009411.2| Homo sapiens BAC clone RP11-342D1 from 2, complete sequence Length = 170804 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 tcattgattgtctccaacttc 274 ||||||||||||||||||||| Sbjct: 170052 tcattgattgtctccaacttc 170032
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 catcgaactccaccggtttgc 344 ||||||||||||||||||||| Sbjct: 383400 catcgaactccaccggtttgc 383380
>ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 aagatccttgaaatcatcca 413 |||||||||||||||||||| Sbjct: 145 aagatccttgaaatcatcca 126
>gb|AF047656.1| Caenorhabditis elegans cosmid F17E9, complete sequence Length = 25543 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 taaactagtgttacttcaaa 69 |||||||||||||||||||| Sbjct: 9040 taaactagtgttacttcaaa 9021
>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research Institute) complete sequence Length = 237199 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 atcaaggtttggccaaagct 569 |||||||||||||||||||| Sbjct: 208196 atcaaggtttggccaaagct 208177
>gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome 7, complete sequence Length = 221548 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 669 acttccacaagaaatgccat 688 |||||||||||||||||||| Sbjct: 61704 acttccacaagaaatgccat 61723
>gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, complete cds Length = 738 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 aagatccttgaaatcatcca 413 |||||||||||||||||||| Sbjct: 72 aagatccttgaaatcatcca 53
>emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BAC clone K10A8 (ESSA project) Length = 43387 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 aagatccttgaaatcatcca 413 |||||||||||||||||||| Sbjct: 11605 aagatccttgaaatcatcca 11624
>gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, complete sequence Length = 178030 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tctccaacttcctcttcccc 283 |||||||||||||||||||| Sbjct: 33537 tctccaacttcctcttcccc 33518
>gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/73 vir region, complete sequence Length = 32495 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 ttcctcttccccctgaggaacacc 295 ||||||||||||| |||||||||| Sbjct: 25787 ttcctcttcccccagaggaacacc 25764
>gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 mRNA, complete cds Length = 994 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 aagatccttgaaatcatcca 413 |||||||||||||||||||| Sbjct: 145 aagatccttgaaatcatcca 126
>gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C17, complete sequence Length = 72259 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tctccaacttcctcttcccc 283 |||||||||||||||||||| Sbjct: 67126 tctccaacttcctcttcccc 67145
>emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZD12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1012 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 aagatccttgaaatcatcca 413 |||||||||||||||||||| Sbjct: 108 aagatccttgaaatcatcca 89
>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence Length = 182776 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tctccaacttcctcttcccc 283 |||||||||||||||||||| Sbjct: 158092 tctccaacttcctcttcccc 158111
>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence Length = 226595 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 669 acttccacaagaaatgccat 688 |||||||||||||||||||| Sbjct: 5368 acttccacaagaaatgccat 5349
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete sequence Length = 148202 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 ttcaaaaacactctatcaagaataataa 168 |||||| ||| ||||||||||||||||| Sbjct: 17065 ttcaaatacattctatcaagaataataa 17092
>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete sequence Length = 182829 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 574 gttctgggctttctctcctctcac 597 ||||||||||||||||| |||||| Sbjct: 18318 gttctgggctttctctcatctcac 18295
>emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chromosome 2, complete sequence Length = 107752 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ggtttgccattgttgagctc 357 |||||||||||||||||||| Sbjct: 45761 ggtttgccattgttgagctc 45742 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,878,304 Number of Sequences: 3902068 Number of extensions: 5878304 Number of successful extensions: 114572 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114434 Number of HSP's gapped (non-prelim): 136 length of query: 716 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 693 effective length of database: 17,143,297,704 effective search space: 11880305308872 effective search space used: 11880305308872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)