ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
2dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
3dbj|AK068892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
4dbj|AK067125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
5dbj|AK059690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
6gb|BT016701.1| Zea mays clone Contig534 mRNA sequence 72 2e-09
7gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, comple... 72 2e-09
8gb|AY105375.1| Zea mays PCO146209 mRNA sequence 72 2e-09
9gb|BT017025.1| Zea mays clone EK07D2312F09.c mRNA sequence 68 4e-08
10gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, comple... 44 0.56
11emb|AM049026.1| Curculio glandium mRNA for ribosomal protein L11... 42 2.2
12emb|AL732564.12| Mouse DNA sequence from clone RP23-442G9 on chr... 42 2.2
13gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 8.8
14gb|AC117949.5| Mus musculus BAC clone RP23-197M6 from chromosome... 40 8.8
15ref|XM_540611.2| PREDICTED: Canis familiaris similar to solute c... 40 8.8
16gb|BC056074.1| Xenopus laevis dimethylarginine dimethylaminohydr... 40 8.8
17gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, c... 40 8.8
18gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, c... 40 8.8
19gb|AC162940.4| Mus musculus BAC clone RP23-95D3 from chromosome ... 40 8.8
20emb|AL591896.6| Human DNA sequence from clone RP11-422P22 on chr... 40 8.8
21emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chr... 40 8.8
22emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 i... 40 8.8
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
24gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610... 40 8.8
25gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K... 40 8.8
26gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) gen... 40 8.8
27dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
28dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
29gb|AC131117.4| Mus musculus BAC clone RP24-351I18 from 13, compl... 40 8.8
30gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, compl... 40 8.8
31emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chro... 40 8.8
32gb|U34359.1|MMGM2AP4 Mus musculus GM2 activator protein (Gm2a) g... 40 8.8
33gb|L19526.1|MUSGM2ACT Mouse GM2 activator protein mRNA, complete... 40 8.8 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                            
Query: 382      ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 441
                |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 22519005 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 22519064

                                                                            
Query: 442      gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 501
                ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 22519065 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 22519118

                                
Query: 502      tgaccccatttgctgg 517
                 | |||||||||||||
Sbjct: 22519119 cggccccatttgctgg 22519134



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 181      ttcagctgtaggaaacaacat 201
                |||||||||||||||||||||
Sbjct: 22518800 ttcagctgtaggaaacaacat 22518820
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>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1720_F04
          Length = 105227

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                         
Query: 382   ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 441
             |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 62493 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 62552

                                                                         
Query: 442   gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 501
             ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 62553 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 62606

                             
Query: 502   tgaccccatttgctgg 517
              | |||||||||||||
Sbjct: 62607 cggccccatttgctgg 62622



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   ttcagctgtaggaaacaacat 201
             |||||||||||||||||||||
Sbjct: 62288 ttcagctgtaggaaacaacat 62308
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>dbj|AK068892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G22, full
            insert sequence
          Length = 2157

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Minus

                                                                        
Query: 382  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 441
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1708 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1649

                                                                        
Query: 442  gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 501
            ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 1648 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1595

                            
Query: 502  tgaccccatttgctgg 517
             | |||||||||||||
Sbjct: 1594 cggccccatttgctgg 1579



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 553  agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 602
            |||| ||||||||||||||| || |||||| | |||||||||||| ||||
Sbjct: 1522 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 1473



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  ttcagctgtaggaaacaacat 201
            |||||||||||||||||||||
Sbjct: 1913 ttcagctgtaggaaacaacat 1893
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>dbj|AK067125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J09, full
            insert sequence
          Length = 1741

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Minus

                                                                        
Query: 382  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 441
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1474 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1415

                                                                        
Query: 442  gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 501
            ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 1414 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1361

                            
Query: 502  tgaccccatttgctgg 517
             | |||||||||||||
Sbjct: 1360 cggccccatttgctgg 1345



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 553  agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 602
            |||| ||||||||||||||| || |||||| | |||||||||||| ||||
Sbjct: 1288 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 1239



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  ttcagctgtaggaaacaacat 201
            |||||||||||||||||||||
Sbjct: 1679 ttcagctgtaggaaacaacat 1659
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>dbj|AK059690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B02, full
            insert sequence
          Length = 1540

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 382  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 441
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1114 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1055

                   
Query: 442  gagaggg 448
            |||||||
Sbjct: 1054 gagaggg 1048



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 553 agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 602
           |||| ||||||||||||||| || |||||| | |||||||||||| ||||
Sbjct: 928 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 879



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  ttcagctgtaggaaacaacat 201
            |||||||||||||||||||||
Sbjct: 1319 ttcagctgtaggaaacaacat 1299
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>gb|BT016701.1| Zea mays clone Contig534 mRNA sequence
          Length = 1500

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 531  ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 590
            |||||||| ||| | |||||| |||||||||||||||||||  || |||||| | |||||
Sbjct: 1030 ccaaaaccgaaggtaccagaagagaagtcctgattgttgttagcaaccttggtggcacca 971

                            
Query: 591  ttctgtggtgctgctg 606
            ||||||| ||||||||
Sbjct: 970  ttctgtgctgctgctg 955



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 401  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 448
            |||||||||||| || |||||||| || |||||||| ||||| |||||
Sbjct: 1181 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1134
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>gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, complete sequence
          Length = 2173

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 531  ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 590
            |||||||||||| | |||||| | |||||||||||||||||  || |||||| | |||||
Sbjct: 1542 ccaaaaccaaaggtaccagaagaaaagtcctgattgttgtttgcaaccttggtggcacca 1483

                            
Query: 591  ttctgtggtgctgctg 606
            ||||||| ||||||||
Sbjct: 1482 ttctgtgctgctgctg 1467



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 401  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 448
            |||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1693 tccttgagttaacgaggaaaaatcgtaatctttgccagattgtgaggg 1646
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>gb|AY105375.1| Zea mays PCO146209 mRNA sequence
          Length = 2189

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 531  ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 590
            |||||||| ||| | |||||| |||||||||||||||||||  || |||||| | |||||
Sbjct: 1536 ccaaaaccgaaggtaccagaagagaagtcctgattgttgttagcaaccttggtggcacca 1477

                            
Query: 591  ttctgtggtgctgctg 606
            ||||||| ||||||||
Sbjct: 1476 ttctgtgctgctgctg 1461



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 401  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 448
            |||||||||||| || |||||||| || |||||||| ||||| |||||
Sbjct: 1687 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1640
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>gb|BT017025.1| Zea mays clone EK07D2312F09.c mRNA sequence
          Length = 965

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 383 tcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgattg 442
           ||||||||| | ||| | |||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 724 tcatcgcttggtgaaaaatccttgagttaacgaggaaaaatcgtaatctttgccagattg 665

                 
Query: 443 agaggg 448
            |||||
Sbjct: 664 tgaggg 659



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 531 ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 590
           |||||||||||| | |||||| ||| ||| ||||||||||||  | |||||| | |||||
Sbjct: 555 ccaaaaccaaaggtaccagaagagaggtcttgattgttgttcgaaaccttggtggcacca 496

                          
Query: 591 ttctgtggtgctgct 605
           ||||||| |||||||
Sbjct: 495 ttctgtgctgctgct 481
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>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence
          Length = 144135

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 532    caaaaccaaagtttccagaaaagaag 557
              ||||||||| ||||||||||||||||
Sbjct: 133629 caaaaccaaggtttccagaaaagaag 133604
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>emb|AM049026.1| Curculio glandium mRNA for ribosomal protein L11e (rpL11e gene)
          Length = 573

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 530 accaaaaccaaagtttccaga 550
           |||||||||||||||||||||
Sbjct: 357 accaaaaccaaagtttccaga 337
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>emb|AL732564.12| Mouse DNA sequence from clone RP23-442G9 on chromosome 2, complete
              sequence
          Length = 211657

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 534    aaaccaaagtttccagaaaag 554
              |||||||||||||||||||||
Sbjct: 107172 aaaccaaagtttccagaaaag 107152
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    tgggcgaaccaaaaccaaag 542
              ||||||||||||||||||||
Sbjct: 793461 tgggcgaaccaaaaccaaag 793442
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>gb|AC117949.5| Mus musculus BAC clone RP23-197M6 from chromosome 18, complete sequence
          Length = 196445

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    aaaccaaagtttccagaaaa 553
              ||||||||||||||||||||
Sbjct: 180985 aaaccaaagtttccagaaaa 180966
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>ref|XM_540611.2| PREDICTED: Canis familiaris similar to solute carrier family 43,
            member 1 (LOC483493), mRNA
          Length = 2200

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 446  gggcatggtagtagaagaggtagg 469
            ||||| ||||||||||||||||||
Sbjct: 1843 gggcacggtagtagaagaggtagg 1820
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>gb|BC056074.1| Xenopus laevis dimethylarginine dimethylaminohydrolase 1, mRNA
           (cDNA clone MGC:69055 IMAGE:4965611), complete cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 taggaaacaacatgagcagt 208
           ||||||||||||||||||||
Sbjct: 209 taggaaacaacatgagcagt 228
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>gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, complete sequence
          Length = 191809

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    aaaccaaagtttccagaaaa 553
              ||||||||||||||||||||
Sbjct: 180483 aaaccaaagtttccagaaaa 180502
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>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence
          Length = 248718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    aaaccaaagtttccagaaaa 553
              ||||||||||||||||||||
Sbjct: 172830 aaaccaaagtttccagaaaa 172811
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>gb|AC162940.4| Mus musculus BAC clone RP23-95D3 from chromosome 13, complete sequence
          Length = 218228

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   gaaccaaaaccaaagtttccagaa 551
             ||||||||||||||| ||||||||
Sbjct: 62274 gaaccaaaaccaaagattccagaa 62297
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>emb|AL591896.6| Human DNA sequence from clone RP11-422P22 on chromosome 1 Contains a
             gene for a novel protein containing Kelch motif and a
             putative novel gene, complete sequence
          Length = 117320

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   gaaccaaaaccaaagtttcc 547
             ||||||||||||||||||||
Sbjct: 68531 gaaccaaaaccaaagtttcc 68512
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>emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chromosome 13, complete
             sequence
          Length = 167477

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   ccaaagtttccagaaaagaa 556
             ||||||||||||||||||||
Sbjct: 86180 ccaaagtttccagaaaagaa 86161
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>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21,
             complete sequence
          Length = 171606

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tgcttatcgcccaatggagg 346
             ||||||||||||||||||||
Sbjct: 64629 tgcttatcgcccaatggagg 64648
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       atacaaagtaatggatatat 80
                ||||||||||||||||||||
Sbjct: 26867730 atacaaagtaatggatatat 26867749
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>gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610G5 map 15q15, complete
             sequence
          Length = 142121

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   tatccacaattggcaaagctgcct 279
             |||| |||||||||||||||||||
Sbjct: 23466 tatctacaattggcaaagctgcct 23489
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>gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K2 map 15q15, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    tatccacaattggcaaagctgcct 279
              |||| |||||||||||||||||||
Sbjct: 145801 tatctacaattggcaaagctgcct 145824
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>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence
          Length = 41352

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    caccctgaacaagagaaaaaagtt 117
             ||||||||| ||||||||||||||
Sbjct: 35733 caccctgaaaaagagaaaaaagtt 35710
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1001_D02
          Length = 129081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    atacaaagtaatggatatat 80
             ||||||||||||||||||||
Sbjct: 46273 atacaaagtaatggatatat 46292
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>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0516F12
          Length = 146364

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     atacaaagtaatggatatat 80
              ||||||||||||||||||||
Sbjct: 133783 atacaaagtaatggatatat 133802
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>gb|AC131117.4| Mus musculus BAC clone RP24-351I18 from 13, complete sequence
          Length = 193056

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 528    gaaccaaaaccaaagtttccagaa 551
              ||||||||||||||| ||||||||
Sbjct: 166273 gaaccaaaaccaaagattccagaa 166296
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>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence
          Length = 210193

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    aaaccaaagtttccagaaaa 553
              ||||||||||||||||||||
Sbjct: 164776 aaaccaaagtttccagaaaa 164795
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>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete
            sequence
          Length = 50643

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 485  gttagaacttgcagttgtga 504
            ||||||||||||||||||||
Sbjct: 5467 gttagaacttgcagttgtga 5486
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>gb|U34359.1|MMGM2AP4 Mus musculus GM2 activator protein (Gm2a) gene, exon 4 and complete
            cds
          Length = 726

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 cattctgtggtgctgctgcc 608
           ||||||||||||||||||||
Sbjct: 231 cattctgtggtgctgctgcc 212
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>gb|L19526.1|MUSGM2ACT Mouse GM2 activator protein mRNA, complete cds
          Length = 1113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 cattctgtggtgctgctgcc 608
           ||||||||||||||||||||
Sbjct: 618 cattctgtggtgctgctgcc 599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,199,977
Number of Sequences: 3902068
Number of extensions: 6199977
Number of successful extensions: 107267
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107117
Number of HSP's gapped (non-prelim): 150
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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