ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full ... 50 0.002
2gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence 42 0.46
3gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.26... 42 0.46
4gb|AY157024.2| Homo sapiens peroxisome proliferative activated r... 38 7.2
5emb|AL109825.23|HSJ148H17 Human DNA sequence from clone RP1-148H... 38 7.2
6gb|AC027126.4|AC027126 Homo sapiens chromosome 3 clone RP11-586C... 38 7.2
7gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p... 38 7.2

>gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full insert mRNA
           sequence
          Length = 984

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                               
Query: 58  aactacaagggcggaagcagacanaca-gaaacaaaatcacgcaatccaggg 108
           |||||||||||||||||||| || |||  ||| |||||||| ||||||||||
Sbjct: 819 aactacaagggcggaagcaggcaaacataaaaaaaaatcacacaatccaggg 768



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>gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 9   gagcaatggaaagggaaaagg 29
           |||||||||||||||||||||
Sbjct: 247 gagcaatggaaagggaaaagg 227



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>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence
          Length = 163685

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    aatggaaagggaaaaggcgac 33
             |||||||||||||||||||||
Sbjct: 62792 aatggaaagggaaaaggcgac 62812



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>gb|AY157024.2| Homo sapiens peroxisome proliferative activated receptor gamma (PPARG)
              gene, complete cds
          Length = 148828

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     agcaatggaaagggaaaag 28
              |||||||||||||||||||
Sbjct: 125674 agcaatggaaagggaaaag 125692



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>emb|AL109825.23|HSJ148H17 Human DNA sequence from clone RP1-148H17 on chromosome 20 Contains a
             novel gene, complete sequence
          Length = 83840

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 70    ggaagcagacanacagaaacaa 91
             ||||||||||| ||||||||||
Sbjct: 72311 ggaagcagacagacagaaacaa 72332



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>gb|AC027126.4|AC027126 Homo sapiens chromosome 3 clone RP11-586C12 map 3p, complete sequence
          Length = 185608

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     agcaatggaaagggaaaag 28
              |||||||||||||||||||
Sbjct: 129428 agcaatggaaagggaaaag 129410



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>gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p, complete sequence
          Length = 166049

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    agcaatggaaagggaaaag 28
             |||||||||||||||||||
Sbjct: 85211 agcaatggaaagggaaaag 85193


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 819,058
Number of Sequences: 3902068
Number of extensions: 819058
Number of successful extensions: 49630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49617
Number of HSP's gapped (non-prelim): 13
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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