ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110131.1| Zea mays CL15186_1 mRNA sequence 135 2e-28
2ref|XM_477385.1| Oryza sativa (japonica cultivar-group), mRNA 111 3e-21
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 46 0.14
7ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transf... 44 0.54
8ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transf... 44 0.54
9emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.54
10gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 44 0.54
11gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 44 0.54
12gb|AC068760.12| Homo sapiens 3 BAC RP11-420J11 (Roswell Park Can... 42 2.1
13gb|AC025450.4|AC025450 Homo sapiens chromosome 5 clone CTD-2135E... 42 2.1
14gb|BC041442.1| Homo sapiens, clone IMAGE:5167229, mRNA 42 2.1
15gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosom... 40 8.4
16gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromo... 40 8.4
17gb|AC161937.4| Pan troglodytes BAC clone CH251-441C24 from chrom... 40 8.4
18ref|XM_974326.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 8.4
19ref|XM_487324.3| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 8.4
20ref|XM_981582.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 8.4
21gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosom... 40 8.4
22ref|XM_722094.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.4
23gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome... 40 8.4
24emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chro... 40 8.4
25gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, com... 40 8.4
26gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 40 8.4
27emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in ... 40 8.4
28dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 8.4
29dbj|AK170475.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 8.4
30gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 8.4
31ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 p... 40 8.4
32gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, com... 40 8.4
33ref|XM_341388.2| PREDICTED: Rattus norvegicus similar to polymer... 40 8.4
34emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 8.4
35gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q... 40 8.4
36emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50 40 8.4
37gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, comple... 40 8.4
38emb|BX571841.6| Zebrafish DNA sequence from clone DKEY-52H13 in ... 40 8.4
39dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.4
40dbj|AP005241.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.4
41dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.4
42gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, comple... 40 8.4
43gb|BC053071.1| Mus musculus polymerase (RNA) III (DNA directed) ... 40 8.4 
>gb|AY110131.1| Zea mays CL15186_1 mRNA sequence
          Length = 822

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Plus

                                                                       
Query: 321 tgtagtgaccctatatccgggacttcttcaataccttcagcaggctgcaggaattctaga 380
           ||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||| |
Sbjct: 599 tgtagtggccctatatctgggacttcttcaatacctacagcaggctgtagaaattctaaa 658

                                                                       
Query: 381 aggcaccacgcaaggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagct 440
           |||| |||    |||||||| ||||||||||| ||||||||||| || || ||||||| |
Sbjct: 659 aggcgccatagtaggtaattgatgatcataactaggcaaaacagttttccagcccaagat 718

                                                                       
Query: 441 ccacatgtgaggtatcggggaagatgatctagcaaattagtgtttgatgactgcattgca 500
           ||||| || || || || |||||  ||||||| ||||| ||  |||  || | |||||||
Sbjct: 719 ccacaagtaagataccgaggaaggcgatctagtaaatttgttgttggagattccattgca 778

                                                   
Query: 501 cgatcgtagacgatctccgttcttttcgcaacatcatccc 540
           ||||| || || ||||| |||||||| |||||||| ||||
Sbjct: 779 cgatcataaacaatctcagttcttttggcaacatcgtccc 818
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>ref|XM_477385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1317

 Score =  111 bits (56), Expect = 3e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                        
Query: 488  tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 547
            |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 1194 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 1135

                                                                        
Query: 548  gagttttttcatccggcgatgcataatttggggatctataccaggcagtatgtcgatagc 607
             || |||||||| ||  ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 1134 aagctttttcattcgaagatgcataacttggggatctatgccaggaagcatatcgatagc 1075



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 333  atatccgggacttcttcaataccttcag 360
            ||||| ||||| ||||||||||||||||
Sbjct: 1294 atatctgggacctcttcaataccttcag 1267
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 488      tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 547
                |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 10009368 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 10009427

                             
Query: 548      gagttttttcatc 560
                 || |||||||||
Sbjct: 10009428 aagctttttcatc 10009440



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 393      aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 452
                ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 10009163 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 10009222

                    
Query: 453      tatc 456
                ||||
Sbjct: 10009223 tatc 10009226



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 565      gatgcataatttggggatctataccaggcagtatgtcgatagc 607
                ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 10009613 gatgcataacttggggatctatgccaggaagcatatcgatagc 10009655



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 333      atatccgggacttcttcaataccttcag 360
                ||||| ||||| ||||||||||||||||
Sbjct: 10009031 atatctgggacctcttcaataccttcag 10009058
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>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0685B06
          Length = 140293

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                          
Query: 488    tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 547
              |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 138900 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 138959

                           
Query: 548    gagttttttcatc 560
               || |||||||||
Sbjct: 138960 aagctttttcatc 138972



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                          
Query: 393    aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 452
              ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 138695 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 138754

                  
Query: 453    tatc 456
              ||||
Sbjct: 138755 tatc 138758



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 565    gatgcataatttggggatctataccaggcagtatgtcgatagc 607
              ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 139145 gatgcataacttggggatctatgccaggaagcatatcgatagc 139187



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 333    atatccgggacttcttcaataccttcag 360
              ||||| ||||| ||||||||||||||||
Sbjct: 138563 atatctgggacctcttcaataccttcag 138590
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 488   tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 547
             |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 41017 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 41076

                          
Query: 548   gagttttttcatc 560
              || |||||||||
Sbjct: 41077 aagctttttcatc 41089



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 393   aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 452
             ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 40812 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 40871

                 
Query: 453   tatc 456
             ||||
Sbjct: 40872 tatc 40875



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 565   gatgcataatttggggatctataccaggcagtatgtcgatagc 607
             ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 41262 gatgcataacttggggatctatgccaggaagcatatcgatagc 41304



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 333   atatccgggacttcttcaataccttcag 360
             ||||| ||||| ||||||||||||||||
Sbjct: 40680 atatctgggacctcttcaataccttcag 40707
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 414     aggcaaaacagcttgcctgccca 436
               |||||||||||||||||||||||
Sbjct: 2617280 aggcaaaacagcttgcctgccca 2617302
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>ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.2 mRNA,
            complete cds
          Length = 1589

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 404  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 445
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.1 mRNA,
            complete cds
          Length = 1651

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 404  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 445
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3
          Length = 88010

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 404   gatcataacgaggcaaaacagcttgcctgcccaagctccaca 445
             ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 21411 gatcataaccatacaaaatagcttccctgcccaagctccaca 21370
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>gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1344

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 404  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 445
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1212 gatcataaccatacaaaatagcttccctgcccaagctccaca 1171
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>gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1549

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 404  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 445
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1309 gatcataaccatacaaaatagcttccctgcccaagctccaca 1268
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>gb|AC068760.12| Homo sapiens 3 BAC RP11-420J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193208

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     ataaaagacacctcagaaagt 40
              |||||||||||||||||||||
Sbjct: 160782 ataaaagacacctcagaaagt 160802
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>gb|AC025450.4|AC025450 Homo sapiens chromosome 5 clone CTD-2135E22, complete sequence
          Length = 127309

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    aaaagacacctcagaaagttg 42
             |||||||||||||||||||||
Sbjct: 54583 aaaagacacctcagaaagttg 54603
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>gb|BC041442.1| Homo sapiens, clone IMAGE:5167229, mRNA
          Length = 1027

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  ataaaagacacctcagaaagt 40
           |||||||||||||||||||||
Sbjct: 82  ataaaagacacctcagaaagt 102
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>gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosome 14, complete sequence
          Length = 197419

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    caaagatctgttctcaaagc 159
              ||||||||||||||||||||
Sbjct: 145723 caaagatctgttctcaaagc 145742
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>gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromosome unknown, complete
             sequence
          Length = 194692

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaattatttcataattatct 132
             ||||||||||||||||||||
Sbjct: 72721 aaattatttcataattatct 72702
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>gb|AC161937.4| Pan troglodytes BAC clone CH251-441C24 from chromosome 7, complete
              sequence
          Length = 160868

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aaattatttcataattatct 132
              ||||||||||||||||||||
Sbjct: 157773 aaattatttcataattatct 157754
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>ref|XM_974326.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A (Polr3a), mRNA
          Length = 4683

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2584 caaagatctgttctcaaagc 2565
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>ref|XM_487324.3| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A, transcript variant 1 (Polr3a), mRNA
          Length = 4683

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2584 caaagatctgttctcaaagc 2565
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>ref|XM_981582.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A (Polr3a), mRNA
          Length = 4685

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2594 caaagatctgttctcaaagc 2575
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>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   agtcactgcaggaccaggaa 179
             ||||||||||||||||||||
Sbjct: 58533 agtcactgcaggaccaggaa 58552
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>ref|XM_722094.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06525)
            partial mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  aaattatttcataattatct 132
            ||||||||||||||||||||
Sbjct: 1375 aaattatttcataattatct 1356
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>gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome 14, complete sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    caaagatctgttctcaaagc 159
              ||||||||||||||||||||
Sbjct: 182131 caaagatctgttctcaaagc 182112
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>emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chromosome 13, complete
             sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gcaggaattctagaaggcac 386
             ||||||||||||||||||||
Sbjct: 51592 gcaggaattctagaaggcac 51611
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>gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, complete sequence
          Length = 164964

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 473   caaattagtgtttgatgactgcat 496
             ||||| ||||||||||||||||||
Sbjct: 75560 caaataagtgtttgatgactgcat 75583
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   ccacaatggttgcaaaacag 271
             ||||||||||||||||||||
Sbjct: 53851 ccacaatggttgcaaaacag 53832
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>emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in linkage group 12, complete
              sequence
          Length = 155303

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     caatggcattacaactcaca 63
              ||||||||||||||||||||
Sbjct: 124174 caatggcattacaactcaca 124155
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 378     agaaggcaccacgcaaggta 397
               ||||||||||||||||||||
Sbjct: 1120627 agaaggcaccacgcaaggta 1120608
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>dbj|AK170475.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630105C13
            product:Polymerase (RNA) III (DNA directed) (155kD)
            homolog [Homo sapiens], full insert sequence
          Length = 4696

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2595 caaagatctgttctcaaagc 2576
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>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    agtcactgcaggaccaggaa 179
              ||||||||||||||||||||
Sbjct: 223839 agtcactgcaggaccaggaa 223858
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>ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 protein (LOC551689),
            mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  accgaaagaaattccagagtggga 205
            ||||||||||||| ||||||||||
Sbjct: 1685 accgaaagaaatttcagagtggga 1708
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>gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, complete sequence
          Length = 173504

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    agtcactgcaggaccaggaa 179
              ||||||||||||||||||||
Sbjct: 156603 agtcactgcaggaccaggaa 156584
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>ref|XM_341388.2| PREDICTED: Rattus norvegicus similar to polymerase (RNA) III (DNA
            directed) (155kD) (predicted) (RGD1305574_predicted),
            mRNA
          Length = 4251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2538 caaagatctgttctcaaagc 2519
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
             sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   agtcactgcaggaccaggaa 179
             ||||||||||||||||||||
Sbjct: 22528 agtcactgcaggaccaggaa 22509
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>gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q21-7q22, complete sequence
          Length = 94960

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaattatttcataattatct 132
             ||||||||||||||||||||
Sbjct: 32762 aaattatttcataattatct 32743
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>emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50
          Length = 170008

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaattatttcataattatct 132
             ||||||||||||||||||||
Sbjct: 46871 aaattatttcataattatct 46852
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>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence
          Length = 252791

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    ctagcccaaactaggcatca 230
              ||||||||||||||||||||
Sbjct: 122130 ctagcccaaactaggcatca 122149
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>emb|BX571841.6| Zebrafish DNA sequence from clone DKEY-52H13 in linkage group 18,
            complete sequence
          Length = 105977

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   agttggcaatggcattacaa 57
            ||||||||||||||||||||
Sbjct: 5935 agttggcaatggcattacaa 5954
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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
              sequence
          Length = 215986

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaaagacacctcagaaagtt 41
              ||||||||||||||||||||
Sbjct: 156757 aaaagacacctcagaaagtt 156738
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>dbj|AP005241.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-502P1, complete
              sequence
          Length = 183466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ttatttcataattatctggt 135
              ||||||||||||||||||||
Sbjct: 174274 ttatttcataattatctggt 174255
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>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete
             sequence
          Length = 181276

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ttatttcataattatctggt 135
             ||||||||||||||||||||
Sbjct: 58528 ttatttcataattatctggt 58509
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>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence
          Length = 163930

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    taaaagacacctcagaaagt 40
             ||||||||||||||||||||
Sbjct: 76233 taaaagacacctcagaaagt 76214
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>gb|BC053071.1| Mus musculus polymerase (RNA) III (DNA directed) polypeptide A, mRNA
            (cDNA clone IMAGE:6405202), complete cds
          Length = 4854

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  caaagatctgttctcaaagc 159
            ||||||||||||||||||||
Sbjct: 2561 caaagatctgttctcaaagc 2542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,862,725
Number of Sequences: 3902068
Number of extensions: 4862725
Number of successful extensions: 84862
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84723
Number of HSP's gapped (non-prelim): 137
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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