ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORAV1_MOUSE (Q8CH62) Oral cancer overexpressed protein 1 homolog 54 4e-07
2ORAV1_HUMAN (Q8WV07) Oral cancer overexpressed protein 1 (Tumor ... 51 3e-06
3SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250) 33 0.93
4UVRB_CLOAB (Q97LQ2) UvrABC system protein B (Protein uvrB) (Exci... 31 2.7
5SLK_MOUSE (O54988) STE20-like serine/threonine-protein kinase (E... 30 4.6
6YN00_YEAST (P53846) Hypothetical 23.3 kDa protein in ORC5-ATX1 i... 30 6.0

>ORAV1_MOUSE (Q8CH62) Oral cancer overexpressed protein 1 homolog|
          Length = 137

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 28/97 (28%), Positives = 49/97 (50%)
 Frame = -3

Query: 633 EGRQVGLKNGFQVGEELGFYQGCLDVWMSIIRLDQDAFSARVRKYIEQLAALVSNYPLSD 454
           EG++ G+ +G ++G E+G Y+G    W  ++        +R  K +E L AL+ ++P  D
Sbjct: 37  EGKRYGMVHGAKIGSEIGCYRGFALAWKCLLHSGAGEKDSRKMKVVEALIALLQDFPYDD 96

Query: 453 PEDEQLQGMMREIRLKFSVITGSLGAKLGYEGRPTSS 343
           P  E+L   +  IR KF  +   L  +  ++  P  S
Sbjct: 97  PTYEKLHEDLDRIRGKFRQLCSLLNVQPDFKVTPGGS 133



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>ORAV1_HUMAN (Q8WV07) Oral cancer overexpressed protein 1 (Tumor amplified and|
           overexpressed sequence 1)
          Length = 137

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = -3

Query: 633 EGRQVGLKNGFQVGEELGFYQGCLDVWMSIIRLDQDAFSARVRKYIEQLAALVSNYPLSD 454
           EGRQ G  +G ++G E+G YQG    W  ++        +R  K +E L  ++  +P  D
Sbjct: 37  EGRQHGTLHGAKIGSEIGCYQGFAFAWKCLLHSCTTEKDSRKMKVLESLIGMIQKFPYDD 96

Query: 453 PEDEQLQGMMREIRLKF 403
           P  ++L   + +IR KF
Sbjct: 97  PTYDKLHEDLDKIRGKF 113



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>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)|
          Length = 2170

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
 Frame = +3

Query: 171  RYPSGSTIRETEHHHKYKIKRE-TILAPNISFKVVTET-*YHKGPFGNSKQATYPQCLAQ 344
            RYPSGS I   E   K   + + ++ A  + F+ + ++   H  P  +S+ A   Q L +
Sbjct: 629  RYPSGSEIPVVEDEEKVDERAKLSVAAKRLLFREMEKSFDEHTVPKRHSRNAAVEQRLRR 688

Query: 345  MMWGDLHTPILLLSFL**R*ISAVS--PSSCLEAAHP----LDQTKDSCSQVQLVALCIS 506
            +       PI     +    I+A    P+SC    HP    L     + S VQ   L  S
Sbjct: 689  LQDRSHTQPITTEEVV----IAATEPIPASCSGVTHPVTARLPSPTVARSSVQPARLQAS 744

Query: 507  SHELRMHLDR-GELLTSTHPSSPDRIPVL---RLPGNHSLSQPAS 629
            +H+  +  D+  E   S  P  PD   +    +L   + LSQP S
Sbjct: 745  AHQKALARDQANEGRESAEPGEPDSSTLSLAEKLALFNKLSQPVS 789



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>UVRB_CLOAB (Q97LQ2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 666

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
 Frame = +3

Query: 12  YYPKFFLXYSEENHLILKREDHIYNEQRDPKN----------------PLKFEDFAADVX 143
           Y+P  FL + +E+H+ L +   +Y   R  KN                PLKF++F   + 
Sbjct: 327 YFPDDFLMFIDESHVTLPQVKAMYGGDRSRKNSLVDYGFRLPSAYDNRPLKFDEFEEKIN 386

Query: 144 YI*SAPDILRYPSGSTIRETEHHHKYKIKRETILAPNISFK 266
            I     +   PS   +  +E+  +  I+   +L P I  +
Sbjct: 387 QI---VFVSATPSNYELDHSENIAEQVIRPTGLLDPEIEVR 424



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>SLK_MOUSE (O54988) STE20-like serine/threonine-protein kinase (EC 2.7.11.1)|
           (STE20-like kinase) (STE20-related
           serine/threonine-protein kinase) (STE20-related kinase)
           (mSLK) (Serine/threonine-protein kinase 2)
           (STE20-related kinase SMAK) (Etk4)
          Length = 1233

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -3

Query: 462 LSDPEDEQLQGMMREI---RLKFSVITGSLGAKLGYEGRPTSSEQDIEDM*LV*NYRKVP 292
           L  PE ++++ +        L+  V+TG+    LG EG   ++E D+E      N +KVP
Sbjct: 631 LEQPETDEVEQVSESNSIEELERLVVTGAEARALGSEGEAAATEVDLERK---ENAQKVP 687

Query: 291 CGIKSQSP 268
              +SQ+P
Sbjct: 688 VKAESQAP 695



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>YN00_YEAST (P53846) Hypothetical 23.3 kDa protein in ORC5-ATX1 intergenic|
           region
          Length = 198

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = -3

Query: 633 EGRQVGLKNGFQVGEELGFYQGCLDVWMSIIRLDQDAFSARVRKYIEQLAALVSNYPLSD 454
           EG+Q GL+ GFQ    LG  +G  DV  S         S  + K I  +  L+    +++
Sbjct: 68  EGKQYGLQVGFQRFTLLGQMEGLCDVIES-----YGLHSPTLEKNIHTIRTLMKGLKMNN 122

Query: 453 PEDE--QLQGMMREIRLKFSVITGSLGAKLGYEGRPTSSEQDIEDM 322
            ++   + + ++ +++ KF  I  +L   +  +  PT + +  ED+
Sbjct: 123 DDESVMEFERVLIKLKNKFRTILITLHRLVKDKRTPTVTFEVFEDV 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,652,003
Number of Sequences: 219361
Number of extensions: 1833012
Number of successful extensions: 4717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4708
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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