ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21f13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY736120.1| Triticum aestivum 20S proteasome beta 7 subunit mRNA, complete cds Length = 694 Score = 617 bits (311), Expect = e-173 Identities = 368/387 (95%) Strand = Plus / Minus Query: 118 taccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttggtc 177 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 688 taccatgttcctacagcacccttggatgggttctcaaaggcggcaaacccccagttggtc 629 Query: 178 ttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatctggaat 237 || ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 628 ttcagggcatacggcgggtagatggttgatccctcggttgtgatcttggcaatctggaat 569 Query: 238 ttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaatcagcttg 297 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 568 ttgttgatggatgaccggtcacggtacagcaggaccagcaagcacttctcaatcagctta 509 Query: 298 acagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggattgccata 357 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 508 acagcttcttcaaaagtcatgtcctcgcgccattcaccacgaagtattgggattgccata 449 Query: 358 tgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcatgtttacc 417 || |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 448 tggttcccaaatccagtggcaatgtggttttcctcaaagtgtgtaccaatcatgttaacc 389 Query: 418 atgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccagtgag 477 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 388 atgccaagatacttctcatcgccctttgggccctttttcactccaccaagcaccagggag 329 Query: 478 ttccacagggggtcaaacttattgcgc 504 ||||| || |||||||||||||||||| Sbjct: 328 ttccatagagggtcaaacttattgcgc 302
>dbj|AK104212.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D09, full insert sequence Length = 1005 Score = 436 bits (220), Expect = e-119 Identities = 367/416 (88%) Strand = Plus / Minus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 790 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 731 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatctgga 235 |||| | | || |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 730 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctgga 671 Query: 236 atttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaatcagct 295 | ||||| || ||||| |||||||||||||||||||| |||| || ||||||| |||| Sbjct: 670 acttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagct 611 Query: 296 tgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggattgcca 355 |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 610 tgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgcca 551 Query: 356 tatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcatgttta 415 |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 550 tatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcatgttaa 491 Query: 416 ccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccagtg 475 ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || | Sbjct: 490 ccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaaggg 431 Query: 476 agttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 ||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 430 agttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 375
>dbj|AK103975.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F06, full insert sequence Length = 985 Score = 436 bits (220), Expect = e-119 Identities = 367/416 (88%) Strand = Plus / Minus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 857 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 798 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatctgga 235 |||| | | || |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 797 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctgga 738 Query: 236 atttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaatcagct 295 | ||||| || ||||| |||||||||||||||||||| |||| || ||||||| |||| Sbjct: 737 acttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagct 678 Query: 296 tgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggattgcca 355 |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 677 tgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgcca 618 Query: 356 tatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcatgttta 415 |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 617 tatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcatgttaa 558 Query: 416 ccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccagtg 475 ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || | Sbjct: 557 ccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaaggg 498 Query: 476 agttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 ||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 497 agttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 442
>dbj|AK071380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091G01, full insert sequence Length = 1090 Score = 436 bits (220), Expect = e-119 Identities = 367/416 (88%) Strand = Plus / Minus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 875 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 816 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatctgga 235 |||| | | || |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 815 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctgga 756 Query: 236 atttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaatcagct 295 | ||||| || ||||| |||||||||||||||||||| |||| || ||||||| |||| Sbjct: 755 acttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagct 696 Query: 296 tgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggattgcca 355 |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 695 tgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgcca 636 Query: 356 tatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcatgttta 415 |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 635 tatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcatgttaa 576 Query: 416 ccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccagtg 475 ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || | Sbjct: 575 ccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaaggg 516 Query: 476 agttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 ||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 515 agttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 460
>dbj|AB026568.1| Oryza sativa (japonica cultivar-group) OsPBG1 mRNA for beta 7 subunit of 20S proteasome, complete cds Length = 1118 Score = 428 bits (216), Expect = e-117 Identities = 366/416 (87%) Strand = Plus / Minus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 876 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 817 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatctgga 235 |||| | | || |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 816 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctgga 757 Query: 236 atttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaatcagct 295 | ||||| || ||||| |||||||||||||||||||| |||| || ||||||| |||| Sbjct: 756 acttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagct 697 Query: 296 tgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggattgcca 355 |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 696 tgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgcca 637 Query: 356 tatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcatgttta 415 |||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| | Sbjct: 636 tatggttcccaaacccagtggcaatgtggttttcctcaaaatgtgtaccaatcatgttaa 577 Query: 416 ccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccagtg 475 ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || | Sbjct: 576 ccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaaggg 517 Query: 476 agttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 ||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 516 agttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 461
>gb|AY104193.1| Zea mays PCO143176 mRNA sequence Length = 1187 Score = 357 bits (180), Expect = 2e-95 Identities = 318/364 (87%) Strand = Plus / Minus Query: 163 aagccccagttggtcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatc 222 |||||||||| |||||| | || ||| || ||||||||||| ||||| ||||| |||||| Sbjct: 948 aagccccagtaggtcttcaaggaatatggtgggtagatggttgatccttcagttgtgatc 889 Query: 223 ttggcaatctggaatttgttgatggatgaccggtcacggtacagcaggaccagcagacat 282 ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| || Sbjct: 888 ttggcaatctggaatttgttgatagatgacctgtcacggtacagcaagaccagcaagcac 829 Query: 283 ttctcaatcagcttgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagt 342 ||||||| |||||| |||||||||||||||||||| ||||||||||||||| | || ||| Sbjct: 828 ttctcaaccagcttaacagcttcttcaaaagtcatatcctcgcgccattcagcacggagt 769 Query: 343 attgggattgccatatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgta 402 || ||||| |||| |||||| |||||||||| || | ||||| ||||| ||||| ||| Sbjct: 768 atcgggatcgccagatgatttgcaaatccagttgcgacatggttttcctcgaagtgggta 709 Query: 403 ccaatcatgtttaccatgccaagatatttctcatcaccctttgggccctttttcactcca 462 |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 708 ccaatcatattaaccatgccaagatacttctcatcaccctttggaccctttttcactcca 649 Query: 463 ccaagcaccagtgagttccacagggggtcaaacttattgcgccggttgtacatcactcgt 522 ||||| || ||||||||||| || || |||||||| ||||| | |||||||||||||| | Sbjct: 648 ccaagtacaagtgagttccagagaggatcaaacttgttgcgtctgttgtacatcactctt 589 Query: 523 gtca 526 |||| Sbjct: 588 gtca 585
>gb|BT018203.1| Zea mays clone EL01N0560A08.c mRNA sequence Length = 946 Score = 355 bits (179), Expect = 1e-94 Identities = 338/391 (86%) Strand = Plus / Minus Query: 163 aagccccagttggtcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatc 222 |||||||||| |||||| | || ||| || ||||||||||| ||||| || | |||||| Sbjct: 846 aagccccagtaggtcttcaaggaatatggggggtagatggttgatccttcccttgtgatc 787 Query: 223 ttggcaatctggaatttgttgatggatgaccggtcacggtacagcaggaccagcagacat 282 ||||||||||||||||||||||| ||||| | ||| |||||||||| ||||| || || Sbjct: 786 ttggcaatctggaatttgttgatagatgatctgtctcggtacagcaagaccaccaagcac 727 Query: 283 ttctcaatcagcttgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagt 342 ||||||| |||||| |||||||||||||||||||| ||||||||||||||| | || ||| Sbjct: 726 ttctcaaccagcttaacagcttcttcaaaagtcatatcctcgcgccattcagcacggagt 667 Query: 343 attgggattgccatatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgta 402 || ||||||||||||||||| ||||||||||| || | ||||| ||||| ||||| ||| Sbjct: 666 atcgggattgccatatgatttccaaatccagtagcgacatggttttcctcgaagtgggta 607 Query: 403 ccaatcatgtttaccatgccaagatatttctcatcaccctttgggccctttttcactcca 462 ||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 606 ccaatcatgttaaccatcccaagatacttctcatcaccctttggaccctttttcacccca 547 Query: 463 ccaagcaccagtgagttccacagggggtcaaacttattgcgccggttgtacatcactcgt 522 ||||| || ||||||||||| || || |||||||| |||||||||||||||||||||| | Sbjct: 546 ccaagtacaagtgagttccagagaggatcaaacttgttgcgccggttgtacatcactctt 487 Query: 523 gtcaggtaggcgtggatttccttggggccca 553 |||| ||| |||||| || |||||||||| Sbjct: 486 gtcaaatagctgtggatctctttggggccca 456
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 220 bits (111), Expect = 4e-54 Identities = 165/183 (90%) Strand = Plus / Plus Query: 231 ctggaatttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaat 290 |||||| ||||| || ||||| |||||||||||||||||||| |||| || ||||||| Sbjct: 99589 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 99648 Query: 291 cagcttgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggat 350 |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 99649 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 99708 Query: 351 tgccatatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcat 410 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 99709 tgccatatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcat 99768 Query: 411 gtt 413 ||| Sbjct: 99769 gtt 99771 Score = 131 bits (66), Expect = 3e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 414 taccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccag 473 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || Sbjct: 99860 taccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaag 99919 Query: 474 tgagttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 |||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 99920 ggagttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 99977 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 99377 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 99436 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatct 232 |||| | | || |||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 99437 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 99493
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 220 bits (111), Expect = 4e-54 Identities = 165/183 (90%) Strand = Plus / Plus Query: 231 ctggaatttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaat 290 |||||| ||||| || ||||| |||||||||||||||||||| |||| || ||||||| Sbjct: 19772322 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 19772381 Query: 291 cagcttgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggat 350 |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 19772382 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 19772441 Query: 351 tgccatatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcat 410 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19772442 tgccatatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcat 19772501 Query: 411 gtt 413 ||| Sbjct: 19772502 gtt 19772504 Score = 131 bits (66), Expect = 3e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 414 taccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccag 473 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || Sbjct: 19772593 taccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaag 19772652 Query: 474 tgagttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 |||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 19772653 ggagttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 19772710 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 19772110 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 19772169 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatct 232 |||| | | || |||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 19772170 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 19772226
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 220 bits (111), Expect = 4e-54 Identities = 165/183 (90%) Strand = Plus / Plus Query: 231 ctggaatttgttgatggatgaccggtcacggtacagcaggaccagcagacatttctcaat 290 |||||| ||||| || ||||| |||||||||||||||||||| |||| || ||||||| Sbjct: 118008 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 118067 Query: 291 cagcttgacagcttcttcaaaagtcatgtcctcgcgccattcaccgcgaagtattgggat 350 |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 118068 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 118127 Query: 351 tgccatatgattcccaaatccagtggcaatgtggttctcctcaaagtgtgtaccaatcat 410 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 118128 tgccatatggttcccaaacccagtggcaatgtggttttcctcaaagtgtgtaccaatcat 118187 Query: 411 gtt 413 ||| Sbjct: 118188 gtt 118190 Score = 131 bits (66), Expect = 3e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 414 taccatgccaagatatttctcatcaccctttgggccctttttcactccaccaagcaccag 473 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || || Sbjct: 118279 taccatgccaagatatttctcttcaccctttggaccctttttcaccccaccaattacaag 118338 Query: 474 tgagttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcaggtag 531 |||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct: 118339 ggagttccagaggggatcaaacttgttgcgcctgttgtacatcactctcgtcaggtag 118396 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 116 tctaccatgttcctacagcacccttggacgggttctcaaaggcggcaaagccccagttgg 175 ||||||||| |||||||||||||| || ||| || |||||||| || |||||||||| | Sbjct: 117796 tctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaag 117855 Query: 176 tcttgagggcatacggcgggtagatggtcgatccctcagtcgtgatcttggcaatct 232 |||| | | || |||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 117856 tcttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 117912
>ref|NM_104523.2| Arabidopsis thaliana PBG1; endopeptidase/ peptidase/ threonine endopeptidase AT1G56450 (PBG1) mRNA, complete cds Length = 1032 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 470 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 420
>dbj|AK221762.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-60-O20 Length = 1041 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 480 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 430
>gb|AY052739.1| Arabidopsis thaliana At1g56450/F13N6_3 mRNA, complete cds Length = 741 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 393 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 343
>gb|AY045596.1| Arabidopsis thaliana At1g56450/F13N6_3 mRNA, complete cds Length = 974 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 446 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 396
>gb|AF378880.1|AF378880 Arabidopsis thaliana At1g56450/F13N6_3 mRNA, complete cds Length = 1018 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 469 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 419
>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete sequence Length = 90698 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 53652 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 53602
>gb|AF043538.1|AF043538 Arabidopsis thaliana 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds Length = 1032 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcactcgtgtcag 527 ||||||||| |||| |||||| ||||| |||||||||||||| || ||||| Sbjct: 435 gttccacagagggttaaacttgttgcgacggttgtacatcacacgggtcag 385
>emb|BX817388.1|CNS0AAIN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 545 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 477 gttccacagggggtcaaacttattgcgccggttgtacatcac 518 ||||||||| |||| |||||| ||||| |||||||||||||| Sbjct: 44 gttccacagagggttaaacttgttgcgacggttgtacatcac 3
>dbj|AP001825.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2537O9, complete sequences Length = 206624 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 aatatgcttcatttcctatctc 99 |||||||||||||||||||||| Sbjct: 55484 aatatgcttcatttcctatctc 55463
>ref|XM_875888.1| PREDICTED: Bos taurus similar to vesicle amine transport protein 1, transcript variant 3 (LOC510698), mRNA Length = 2365 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 cagcttcttcaaaagtcatgtcctc 323 |||||||||||||||||||| |||| Sbjct: 259 cagcttcttcaaaagtcatggcctc 235
>ref|XM_587873.2| PREDICTED: Bos taurus similar to vesicle amine transport protein 1, transcript variant 1 (LOC510698), mRNA Length = 2654 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 cagcttcttcaaaagtcatgtcctc 323 |||||||||||||||||||| |||| Sbjct: 548 cagcttcttcaaaagtcatggcctc 524
>gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosome 19, complete sequence Length = 177655 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 agcagacatttctcaatcagc 294 ||||||||||||||||||||| Sbjct: 83827 agcagacatttctcaatcagc 83847
>gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, complete sequence Length = 180925 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tttttcactccaccaagcacc 471 ||||||||||||||||||||| Sbjct: 172203 tttttcactccaccaagcacc 172223
>gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 map 18, complete sequence Length = 186929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 agcagacatttctcaatcagc 294 ||||||||||||||||||||| Sbjct: 58217 agcagacatttctcaatcagc 58237
>gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence Length = 149006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tttttcactccaccaagcacc 471 ||||||||||||||||||||| Sbjct: 111648 tttttcactccaccaagcacc 111668
>ref|XM_221722.3| PREDICTED: Rattus norvegicus ubiquitin specific protease 25 (predicted) (Usp25_predicted), mRNA Length = 4533 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 accagcagacatttctcaatcagct 295 |||||||||||||||| |||||||| Sbjct: 578 accagcagacatttctgaatcagct 602
>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence Length = 246546 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tttttcactccaccaagcacc 471 ||||||||||||||||||||| Sbjct: 145735 tttttcactccaccaagcacc 145755
>gb|AC005548.1|AC005548 Homo sapiens chromosome 17, clone hRPK.756_K_11, complete sequence Length = 156811 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 tggcaatgtggttctcctcaa 394 ||||||||||||||||||||| Sbjct: 7428 tggcaatgtggttctcctcaa 7448
>gb|AC117657.11| Mus musculus chromosome 15, clone RP23-299O23, complete sequence Length = 198005 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cacacaagggctgaaactgt 64 |||||||||||||||||||| Sbjct: 194267 cacacaagggctgaaactgt 194248
>emb|CR848817.8| Zebrafish DNA sequence from clone DKEY-211I2 in linkage group 16, complete sequence Length = 54602 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cttattgcgccggttgtaca 514 |||||||||||||||||||| Sbjct: 12660 cttattgcgccggttgtaca 12679
>gb|AC118022.12| Mus musculus chromosome 15, clone RP23-459I23, complete sequence Length = 190653 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cacacaagggctgaaactgt 64 |||||||||||||||||||| Sbjct: 11877 cacacaagggctgaaactgt 11858
>emb|AL807740.6| Human DNA sequence from clone RP11-203E14 on chromosome X, complete sequence Length = 166548 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gaaactgttccagcagcaga 76 |||||||||||||||||||| Sbjct: 116939 gaaactgttccagcagcaga 116958
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 gctgaaactgttccagcagc 73 |||||||||||||||||||| Sbjct: 1928616 gctgaaactgttccagcagc 1928597
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tcgcgccattcaccgcgaag 341 |||||||||||||||||||| Sbjct: 863335 tcgcgccattcaccgcgaag 863354
>ref|XM_962918.1| PREDICTED: Tribolium castaneum similar to CG11397-PA (LOC656381), mRNA Length = 3834 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 279 acatttctcaatcagcttgacagcttcttcaa 310 |||||||||||||| ||| |||||||| |||| Sbjct: 2661 acatttctcaatcatcttcacagcttcgtcaa 2630
>ref|XM_778811.1| PREDICTED: Strongylocentrotus purpuratus similar to Zinc phosphodiesterase ELAC protein 2 (Ribonuclease Z 2) (RNase Z 2) (tRNase Z 2) (tRNA 3 endonuclease 2) (ElaC homolog protein 2) (LOC578654), mRNA Length = 2052 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 cagcagacatttctcaatcagctt 296 ||||||||||| |||||||||||| Sbjct: 847 cagcagacattactcaatcagctt 870
>gb|AC090684.6| Homo sapiens chromosome 18, clone RP11-409K17, complete sequence Length = 77101 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agaatatgcttcatttccta 95 |||||||||||||||||||| Sbjct: 70818 agaatatgcttcatttccta 70837
>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence Length = 149542 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcttcaaaagtcatgtcctc 323 |||||||||||||||||||| Sbjct: 24369 tcttcaaaagtcatgtcctc 24350
>gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence Length = 149951 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcttcaaaagtcatgtcctc 323 |||||||||||||||||||| Sbjct: 143111 tcttcaaaagtcatgtcctc 143092
>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence Length = 166451 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agaatatgcttcatttccta 95 |||||||||||||||||||| Sbjct: 26534 agaatatgcttcatttccta 26553
>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence Length = 153731 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 aatcagcttgacagcttcttcaaa 311 |||||||||| ||||||||||||| Sbjct: 119669 aatcagcttgtcagcttcttcaaa 119646
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ctgaaactgttccagcagca 74 |||||||||||||||||||| Sbjct: 1221295 ctgaaactgttccagcagca 1221314
>emb|AL929076.10| Mouse DNA sequence from clone RP23-64F21 on chromosome 2, complete sequence Length = 126565 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 tttgggccctttttcactccacca 465 |||||||||||| ||||||||||| Sbjct: 120460 tttgggccctttctcactccacca 120437
>dbj|AB028618.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOD1 Length = 85690 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 ttctcaatcagcttgacagcttcttcaa 310 |||||||||||||| ||||||| ||||| Sbjct: 11654 ttctcaatcagcttcacagctttttcaa 11627
>emb|CR293509.11| Zebrafish DNA sequence from clone DKEY-224K5 in linkage group 4, complete sequence Length = 143625 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 aatttgttgatggatgaccg 254 |||||||||||||||||||| Sbjct: 115720 aatttgttgatggatgaccg 115739
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 caatcatgtttaccatgcca 423 |||||||||||||||||||| Sbjct: 879932 caatcatgtttaccatgcca 879951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,394,056 Number of Sequences: 3902068 Number of extensions: 4394056 Number of successful extensions: 77507 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77355 Number of HSP's gapped (non-prelim): 145 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
