ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ118105.1| Hordeum vulgare plastid division regulator MinE m... 565 e-158
2dbj|AB127981.1| Zea mays mRNA for MinE, complete cds 182 9e-43
3gb|AY109856.1| Zea mays CL40167_1 mRNA sequence 182 9e-43
4gb|AY496951.1| Oryza sativa (japonica cultivar-group) putative c... 168 1e-38
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
6dbj|AK070044.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
7dbj|AK058897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 168 1e-38
9emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 168 1e-38
10emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 168 1e-38
11ref|XM_519968.1| PREDICTED: Pan troglodytes thyroglobulin (LOC46... 44 0.55
12gb|AF169658.1|HSTHRG05 Homo sapiens thyroglobulin gene, exon 29 44 0.55
13ref|NM_003235.4| Homo sapiens thyroglobulin (TG), mRNA 44 0.55
14emb|X05615.1|HSTHYRR Human mRNA for thyroglobulin 44 0.55
15gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8... 44 0.55
16gb|S80793.1| Tg=thyroglobulin [human, congenital goiter patient ... 44 0.55
17gb|U93033.2|U93033 Homo sapiens thyroglobulin (TG) mRNA, complet... 44 0.55
18dbj|AB209159.1| Homo sapiens mRNA for Thyroglobulin precursor va... 44 0.55
19ref|XM_527089.1| PREDICTED: Pan troglodytes Ras-GTPase-activatin... 42 2.2
20gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 2.2
21gb|DQ118106.1| Glycine max plastid division regulator MinE mRNA,... 42 2.2
22gb|AC109999.2| Homo sapiens chromosome 5 clone CTD-2265M6, compl... 42 2.2
23gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, comple... 42 2.2
24gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell ... 42 2.2
25gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cos... 42 2.2
26gb|M74589.1|YSCSEN1A Saccharomyces cerevisiae SEN1 mRNA 42 2.2
27emb|X78262.1|HSTRE5REP H.sapiens mRNA for TRE5 42 2.2
28gb|AC130414.3| Homo sapiens 12 BAC RP11-15P10 (Roswell Park Canc... 42 2.2
29gb|AE008443.1| Streptococcus pneumoniae R6 section 59 of 184 of ... 40 8.5
30gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, co... 40 8.5
31emb|AJ239034.1|SPN239034 Streptococcus pneumoniae mta gene for r... 40 8.5
32emb|AL845463.7| Mouse DNA sequence from clone RP23-386K17 on chr... 40 8.5
33gb|AC098868.3| Homo sapiens BAC clone RP11-545H22 from 4, comple... 40 8.5
34gb|BC003258.1| Mus musculus zinc finger protein 672, mRNA (cDNA ... 40 8.5
35gb|AC008166.2| Homo sapiens BAC clone RP11-155J2 from 2, complet... 40 8.5
36gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.5
37gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 8.5
38gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 8.5
39dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 8.5 
>gb|DQ118105.1| Hordeum vulgare plastid division regulator MinE mRNA, complete cds;
           nuclear gene for plastid product
          Length = 805

 Score =  565 bits (285), Expect = e-158
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 341 cccgaggagtcccaaggggcgataaaggaacacaacagagcgcactaggccaaggaatca 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cccgaggagtcccaaggggcgataaaggaacacaacagagcgcactaggccaaggaatca 746

                                                                       
Query: 401 gtggttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctcc 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtggttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctcc 686

                                                                       
Query: 461 agtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggta 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggta 626

                                                                       
Query: 521 ctcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatc 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatc 566

                                                        
Query: 581 ggtcgagatatccacttgtacattatcacgcgattcaatctcgac 625
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtcgagatatccacttgtacattatcacgcgattcaatctcgac 521
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>dbj|AB127981.1| Zea mays mRNA for MinE, complete cds
          Length = 974

 Score =  182 bits (92), Expect = 9e-43
 Identities = 176/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 404 gttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctccagt 463
           ||||||||| || ||| |||| || || ||||| |||||  | || || |||||||||||
Sbjct: 744 gttctcattgggtacaaagaagtcaaaggtgacgtcaacgctccctgaggattctccagt 685

                                                                       
Query: 464 gtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggtactc 523
           |||||||||||| ||||| || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 684 gtccttgaagtcgacaccgacaattttccctctgtactgctcttcagattcctggtactc 625

                                                                       
Query: 524 gggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatcggt 583
            ||||||||||||||||| ||||| |  ||||| ||||| ||||||||||||||||| ||
Sbjct: 624 tggcttcacacggcgcacaggaactgacacagagtacacggtgccaaggccagcatcagt 565

                                   
Query: 584 cgagatatccacttgtacattatc 607
            |||||||||||||| || |||||
Sbjct: 564 tgagatatccacttggacgttatc 541
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>gb|AY109856.1| Zea mays CL40167_1 mRNA sequence
          Length = 803

 Score =  182 bits (92), Expect = 9e-43
 Identities = 176/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 404 gttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctccagt 463
           ||||||||| || ||| |||| || || ||||| |||||  | || || |||||||||||
Sbjct: 573 gttctcattgggtacaaagaagtcaaaggtgacgtcaacgctccctgaggattctccagt 514

                                                                       
Query: 464 gtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggtactc 523
           |||||||||||| ||||| || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 513 gtccttgaagtcgacaccgacaattttccctctgtactgctcttcagattcctggtactc 454

                                                                       
Query: 524 gggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatcggt 583
            ||||||||||||||||| ||||| |  ||||| ||||| ||||||||||||||||| ||
Sbjct: 453 tggcttcacacggcgcacaggaactgacacagagtacacggtgccaaggccagcatcagt 394

                                   
Query: 584 cgagatatccacttgtacattatc 607
            |||||||||||||| || |||||
Sbjct: 393 tgagatatccacttggacgttatc 370
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>gb|AY496951.1| Oryza sativa (japonica cultivar-group) putative cell division
           topological specificity factor (minE) mRNA, complete cds
          Length = 1035

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                       
Query: 455 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
           ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 729 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 670

                                                                       
Query: 515 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
           ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 669 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 610

                                
Query: 575 agcatcggtcgagatatccac 595
           |||||| || |||||||||||
Sbjct: 609 agcatcagttgagatatccac 589



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                       
Query: 241 tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
           |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 956 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 897

                          
Query: 301 cctagatatttacat 315
           ||||||||| |||||
Sbjct: 896 cctagatatgtacat 882
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                            
Query: 455      ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
                ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 18954484 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 18954543

                                                                            
Query: 515      ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
                ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 18954544 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 18954603

                                     
Query: 575      agcatcggtcgagatatccac 595
                |||||| || |||||||||||
Sbjct: 18954604 agcatcagttgagatatccac 18954624



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 241      tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
                |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 18954257 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 18954316

                               
Query: 301      cctagatatttacat 315
                ||||||||| |||||
Sbjct: 18954317 cctagatatgtacat 18954331
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>dbj|AK070044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J16, full
           insert sequence
          Length = 1003

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                       
Query: 455 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
           ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 719 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 660

                                                                       
Query: 515 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
           ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 659 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 600

                                
Query: 575 agcatcggtcgagatatccac 595
           |||||| || |||||||||||
Sbjct: 599 agcatcagttgagatatccac 579



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                       
Query: 241 tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
           |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 946 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 887

                          
Query: 301 cctagatatttacat 315
           ||||||||| |||||
Sbjct: 886 cctagatatgtacat 872
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>dbj|AK058897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H02, full
           insert sequence
          Length = 997

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                       
Query: 455 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
           ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 691 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 632

                                                                       
Query: 515 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
           ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 631 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 572

                                
Query: 575 agcatcggtcgagatatccac 595
           |||||| || |||||||||||
Sbjct: 571 agcatcagttgagatatccac 551



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                       
Query: 241 tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
           |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 918 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 859

                          
Query: 301 cctagatatttacat 315
           ||||||||| |||||
Sbjct: 858 cctagatatgtacat 844
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                            
Query: 455      ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
                ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 18880711 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 18880770

                                                                            
Query: 515      ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
                ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 18880771 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 18880830

                                     
Query: 575      agcatcggtcgagatatccac 595
                |||||| || |||||||||||
Sbjct: 18880831 agcatcagttgagatatccac 18880851



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 241      tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
                |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 18880484 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 18880543

                               
Query: 301      cctagatatttacat 315
                ||||||||| |||||
Sbjct: 18880544 cctagatatgtacat 18880558
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>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153064

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                         
Query: 455   ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
             ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 15895 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 15836

                                                                         
Query: 515   ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
             ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 15835 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 15776

                                  
Query: 575   agcatcggtcgagatatccac 595
             |||||| || |||||||||||
Sbjct: 15775 agcatcagttgagatatccac 15755



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Minus

                                                                         
Query: 241   tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
             |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 16122 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 16063

                            
Query: 301   cctagatatttacat 315
             ||||||||| |||||
Sbjct: 16062 cctagatatgtacat 16048
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>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                         
Query: 455   ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 514
             ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct: 50601 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 50660

                                                                         
Query: 515   ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 574
             ||||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 50661 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 50720

                                  
Query: 575   agcatcggtcgagatatccac 595
             |||||| || |||||||||||
Sbjct: 50721 agcatcagttgagatatccac 50741



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                         
Query: 241   tgccacctcctgaacaaaattncaaaaccgaattacatgaaacactgaatgaaagaaaag 300
             |||||||| | |||||||| | |||||   ||||||||||||| | ||   ||| |||||
Sbjct: 50374 tgccaccttcagaacaaaaattcaaaataaaattacatgaaacgcagagacaaacaaaag 50433

                            
Query: 301   cctagatatttacat 315
             ||||||||| |||||
Sbjct: 50434 cctagatatgtacat 50448
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>ref|XM_519968.1| PREDICTED: Pan troglodytes thyroglobulin (LOC464408), mRNA
          Length = 2403

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 559  acacagtgccaaggccagcatc 580
            ||||||||||||||||||||||
Sbjct: 1277 acacagtgccaaggccagcatc 1298
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>gb|AF169658.1|HSTHRG05 Homo sapiens thyroglobulin gene, exon 29
          Length = 840

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 559 acacagtgccaaggccagcatc 580
           ||||||||||||||||||||||
Sbjct: 448 acacagtgccaaggccagcatc 469
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>ref|NM_003235.4| Homo sapiens thyroglobulin (TG), mRNA
          Length = 8453

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 559  acacagtgccaaggccagcatc 580
            ||||||||||||||||||||||
Sbjct: 5554 acacagtgccaaggccagcatc 5575
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>emb|X05615.1|HSTHYRR Human mRNA for thyroglobulin
          Length = 8448

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 559  acacagtgccaaggccagcatc 580
            ||||||||||||||||||||||
Sbjct: 5551 acacagtgccaaggccagcatc 5572
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>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete
             sequence
          Length = 134215

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 559   acacagtgccaaggccagcatc 580
             ||||||||||||||||||||||
Sbjct: 22138 acacagtgccaaggccagcatc 22159
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>gb|S80793.1| Tg=thyroglobulin [human, congenital goiter patient HSN, thyroid
           tissue, mRNA Partial Mutant, 186 nt]
          Length = 186

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 559 acacagtgccaaggccagcatc 580
           ||||||||||||||||||||||
Sbjct: 47  acacagtgccaaggccagcatc 68
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>gb|U93033.2|U93033 Homo sapiens thyroglobulin (TG) mRNA, complete cds
          Length = 8427

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 559  acacagtgccaaggccagcatc 580
            ||||||||||||||||||||||
Sbjct: 5513 acacagtgccaaggccagcatc 5534
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>dbj|AB209159.1| Homo sapiens mRNA for Thyroglobulin precursor variant protein
          Length = 5065

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 559  acacagtgccaaggccagcatc 580
            ||||||||||||||||||||||
Sbjct: 2168 acacagtgccaaggccagcatc 2189
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>ref|XM_527089.1| PREDICTED: Pan troglodytes Ras-GTPase-activating protein
           SH3-domain-binding protein (LOC471711), mRNA
          Length = 2187

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  tgacaaaggaaaagggtttgg 71
           |||||||||||||||||||||
Sbjct: 714 tgacaaaggaaaagggtttgg 734
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   cggtcgccgcaccgcaagacg 177
             |||||||||||||||||||||
Sbjct: 86728 cggtcgccgcaccgcaagacg 86708
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>gb|DQ118106.1| Glycine max plastid division regulator MinE mRNA, complete cds;
           nuclear gene for plastid product
          Length = 849

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 417 acatagaaatcgaatgtgacatcaacattaccagacgattctccagtgtcctt 469
           ||||||||||| ||||| |||||||||  |||||| |  ||||| ||||||||
Sbjct: 709 acatagaaatcaaatgtaacatcaacagaaccagaagtctctccggtgtcctt 657
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>gb|AC109999.2| Homo sapiens chromosome 5 clone CTD-2265M6, complete sequence
          Length = 143750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    tgacaaaggaaaagggtttgg 71
             |||||||||||||||||||||
Sbjct: 90822 tgacaaaggaaaagggtttgg 90842
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>gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, complete sequence
          Length = 170368

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     tgacaaaggaaaagggtttgg 71
              |||||||||||||||||||||
Sbjct: 131131 tgacaaaggaaaagggtttgg 131111
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>gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 147720

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    catgacaaaggaaaagggttt 69
             |||||||||||||||||||||
Sbjct: 30097 catgacaaaggaaaagggttt 30117
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>gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cosmid 9576
          Length = 35805

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 429   aatgtgacatcaacattacca 449
             |||||||||||||||||||||
Sbjct: 32668 aatgtgacatcaacattacca 32648
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>gb|M74589.1|YSCSEN1A Saccharomyces cerevisiae SEN1 mRNA
          Length = 6915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 429  aatgtgacatcaacattacca 449
            |||||||||||||||||||||
Sbjct: 3695 aatgtgacatcaacattacca 3675
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>emb|X78262.1|HSTRE5REP H.sapiens mRNA for TRE5
          Length = 7002

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  tgacaaaggaaaagggtttgg 71
           |||||||||||||||||||||
Sbjct: 839 tgacaaaggaaaagggtttgg 859
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>gb|AC130414.3| Homo sapiens 12 BAC RP11-15P10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 47422

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 49   catgacaaaggaaaagggttt 69
            |||||||||||||||||||||
Sbjct: 8411 catgacaaaggaaaagggttt 8391
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>gb|AE008443.1| Streptococcus pneumoniae R6 section 59 of 184 of the complete
           genome
          Length = 11402

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 aaagaaaagcctagatattt 311
           ||||||||||||||||||||
Sbjct: 211 aaagaaaagcctagatattt 192
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>gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, complete sequence
          Length = 167088

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 557    atacacagtgccaaggccag 576
              ||||||||||||||||||||
Sbjct: 140872 atacacagtgccaaggccag 140853
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>emb|AJ239034.1|SPN239034 Streptococcus pneumoniae mta gene for regulator of pmrA (multi-drug
           efflux pump)
          Length = 840

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 aaagaaaagcctagatattt 311
           ||||||||||||||||||||
Sbjct: 278 aaagaaaagcctagatattt 259
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>emb|AL845463.7| Mouse DNA sequence from clone RP23-386K17 on chromosome 11 Contains  a
             novel pseudogene, three novel genes and three CpG islands,
             complete sequence
          Length = 59235

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   actgctcttcagattcctgg 518
             ||||||||||||||||||||
Sbjct: 17848 actgctcttcagattcctgg 17867
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>gb|AC098868.3| Homo sapiens BAC clone RP11-545H22 from 4, complete sequence
          Length = 124972

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    aaacactgaatgaaagaaaa 299
              ||||||||||||||||||||
Sbjct: 110914 aaacactgaatgaaagaaaa 110933
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>gb|BC003258.1| Mus musculus zinc finger protein 672, mRNA (cDNA clone MGC:7841
           IMAGE:3500812), complete cds
          Length = 2586

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 actgctcttcagattcctgg 518
           ||||||||||||||||||||
Sbjct: 129 actgctcttcagattcctgg 110
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>gb|AC008166.2| Homo sapiens BAC clone RP11-155J2 from 2, complete sequence
          Length = 176991

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    gacaaaggaaaagggtttgg 71
             ||||||||||||||||||||
Sbjct: 92120 gacaaaggaaaagggtttgg 92101
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    aaagaaaagcctagatattt 311
              ||||||||||||||||||||
Sbjct: 701677 aaagaaaagcctagatattt 701658
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>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    aaacactgaatgaaagaaaa 299
              ||||||||||||||||||||
Sbjct: 144060 aaacactgaatgaaagaaaa 144041
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 198     agcgttgaccaaatatgatttcaa 221
               |||| |||||||||||||||||||
Sbjct: 1028316 agcgctgaccaaatatgatttcaa 1028339
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 198     agcgttgaccaaatatgatttcaa 221
               |||| |||||||||||||||||||
Sbjct: 1026657 agcgctgaccaaatatgatttcaa 1026680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,624,404
Number of Sequences: 3902068
Number of extensions: 5624404
Number of successful extensions: 103588
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103426
Number of HSP's gapped (non-prelim): 155
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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