ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20p23 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 126 bits (317), Expect(2) = 1e-40 Identities = 66/96 (68%), Positives = 72/96 (75%) Frame = -2 Query: 512 SYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXX 333 SYSRFFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 192 SYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELL 251 Query: 332 XXXXXXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 225 ETPK NEAV KFDGS ++H Sbjct: 252 KEYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH 287 Score = 59.7 bits (143), Expect(2) = 1e-40 Identities = 28/33 (84%), Positives = 32/33 (96%) Frame = -1 Query: 612 KNGNLLVEFSSRDGEIESILKDISERAQGKGNF 514 +NGN LVEFSS+DGEIE+ILKDISERAQGKG+F Sbjct: 159 QNGNSLVEFSSKDGEIEAILKDISERAQGKGSF 191
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 110 bits (274), Expect(2) = 9e-29 Identities = 59/95 (62%), Positives = 68/95 (71%) Frame = -2 Query: 524 RETSSYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 345 +E SYSRFFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 194 KEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQA 253 Query: 344 XXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 240 ++ K NE ++K G T Sbjct: 254 KELLKEYVEREKKKQGERAQSQKANETISKCLGDT 288 Score = 36.6 bits (83), Expect(2) = 9e-29 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -1 Query: 597 LVEFSSRDGEIESILKDISERAQGKGNF 514 LV+FSS++G+IE++LKDI+ RA K F Sbjct: 170 LVDFSSKEGDIEAVLKDIAGRAGSKEGF 197
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 100 bits (250), Expect = 3e-21 Identities = 55/95 (57%), Positives = 69/95 (72%) Frame = -2 Query: 629 KWARSTKMVIC*LNFLPEMGK*SPF*KIYQKGPRVRETSSYSRFFAVGLFRLLELSNATE 450 +WAR T+ ++F + G+ K + ++ YSR FAVGLFRLLEL+N T+ Sbjct: 161 EWAR-TQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTD 219 Query: 449 PTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 345 PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 220 PTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Frame = -2 Query: 509 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 351 YSR FA+GLF LLE SN L + A L+++ + +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMT 200 Query: 350 QA 345 QA Sbjct: 201 QA 202
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -2 Query: 509 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 351 YSR FA+GLF LLE SN L + A L+++ +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMT 200 Query: 350 QA 345 QA Sbjct: 201 QA 202
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -2 Query: 527 VRETSSYSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLL 363 + T YSR AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L Sbjct: 125 LNHTGKYSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNL 183 Query: 362 SKLVQA 345 K+ QA Sbjct: 184 DKINQA 189
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = -2 Query: 524 RETSSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNL 366 R YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ Sbjct: 137 RSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSN 196 Query: 365 LSKLVQA 345 L K+ QA Sbjct: 197 LEKMEQA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = -2 Query: 524 RETSSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNL 366 R YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ Sbjct: 137 RSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSN 196 Query: 365 LSKLVQA 345 L K+ QA Sbjct: 197 LEKMEQA 203
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 37.0 bits (84), Expect = 0.048 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Frame = -2 Query: 518 TSSYSRFFAVGLFRLLELSNATEPT-------VLDKLCAALNINKKSVDRDLDVYRNLLS 360 T YSR AVGL LL + E + + +L ++ +K V++DL++Y++ L Sbjct: 137 TFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDLNLYKSNLE 196 Query: 359 KLVQA 345 K+ QA Sbjct: 197 KMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 36.2 bits (82), Expect = 0.082 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Frame = -2 Query: 536 GPRVRETSSYSRFFAVGLFRLL-----ELSNATEPT--VLDKLCAALNINKKSVDRDLDV 378 G R YSR FA+GL+ LL E+ + E L +L L+++ V +DLD+ Sbjct: 131 GIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDL 190 Query: 377 YRNLLSKLVQ 348 YR+ L K+ Q Sbjct: 191 YRSNLEKVDQ 200
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -2 Query: 521 ETSSYSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLL 363 E YSR F++GL +LE +S L ++C L ++ V RDLD + ++L Sbjct: 139 ERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVL 198 Query: 362 SKL 354 ++ Sbjct: 199 ERI 201
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 33.9 bits (76), Expect = 0.41 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = -2 Query: 536 GPRVRETSSYSRFFAVGLFRLLE--LSNATEPTVLD------KLCAALNINKKSVDRDLD 381 G ++ E S YSR A+G+ RL E +A +P D +L ALN + V++DL Sbjct: 116 GQKLGEGSHYSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLS 175 Query: 380 VY 375 ++ Sbjct: 176 LF 177
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 33.5 bits (75), Expect = 0.53 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -2 Query: 509 YSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 354 YSR A+G++ L+ N + ++ + AL +K V++D++ Y+N + K+ Sbjct: 137 YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKDINQYKNSMEKI 193
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%) Frame = -2 Query: 512 SYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSK 357 +YSR AVGL+ E+ S EP L+ + + L + + V +DL++YR+ L + Sbjct: 139 AYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLDR 198 Query: 356 LVQA 345 + QA Sbjct: 199 MKQA 202
>L_SYNV (P31332) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2116 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 543 IYLSEWTLFPHLWKKIQLTDYHFCGACP 626 IYLSE + + +L KK+ D H G+CP Sbjct: 1116 IYLSEMSYYLYLSKKVNTQDGHAIGSCP 1143
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -1 Query: 456 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 283 D A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + + Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320 Query: 282 A 280 A Sbjct: 321 A 321
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 30.0 bits (66), Expect = 5.9 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Frame = -2 Query: 512 SYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSK 357 +YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L + Sbjct: 139 AYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDR 198 Query: 356 LVQA 345 L QA Sbjct: 199 LKQA 202
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 5.9 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 185 QILTVIH-LDSVENYRGHLWLLLAWCSTR 102 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 5.9 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 185 QILTVIH-LDSVENYRGHLWLLLAWCSTR 102 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 5.9 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -2 Query: 185 QILTVIH-LDSVENYRGHLWLLLAWCSTR 102 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 29.6 bits (65), Expect = 7.7 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = -2 Query: 539 KGPRVRETSSYSRFFAVGLFRLLEL-SNATEPTVLD----KLCAALNINKKSVDRDLDVY 375 K + + + YSR AVGL LLE S+ ++ + L KL L + + V++DL V+ Sbjct: 115 KEQSLSDGAHYSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDLTVF 174 Query: 374 RNLLSKLVQA 345 + ++ QA Sbjct: 175 SSNSERMEQA 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,460,820 Number of Sequences: 219361 Number of extensions: 1584839 Number of successful extensions: 4313 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4305 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
