ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20p21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 3e-08
2gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 68 3e-08
3gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 68 3e-08
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5gb|AY106648.1| Zea mays PCO066900 mRNA sequence 52 0.002
6gb|AY106288.1| Zea mays PCO089569 mRNA sequence 48 0.032
7emb|CR623368.1| full-length cDNA clone CS0DI032YP14 of Placenta ... 46 0.13
8emb|CR606945.1| full-length cDNA clone CS0DF015YP05 of Fetal bra... 46 0.13
9ref|XM_937707.1| PREDICTED: Homo sapiens hypothetical protein LO... 46 0.13
10gb|AC000095.5| Homo sapiens Chromosome 22q11.2 Fosmid Clone f41c... 46 0.13
11gb|AC000069.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 103a... 46 0.13
12gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
13gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
14emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 44 0.50
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
16emb|BX537274.3| Zebrafish DNA sequence from clone DKEY-103L3 in ... 44 0.50
17emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 i... 44 0.50
18emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on ch... 42 2.0
19emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on ch... 42 2.0
20gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cance... 42 2.0
21gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosom... 40 7.8
22gb|AY693018.1| Saccharomyces cerevisiae clone FLH112838.01X YEL0... 40 7.8
23gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome... 40 7.8
24gb|AC124594.4| Mus musculus BAC clone RP23-10F19 from chromosome... 40 7.8
25gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, c... 40 7.8
26gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosom... 40 7.8
27emb|Z81517.1|CEF28B1 Caenorhabditis elegans Cosmid F28B1, comple... 40 7.8
28gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, com... 40 7.8
29ref|XM_734715.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.8
30ref|XM_675022.1| Plasmodium berghei strain ANKA eukaryotic trans... 40 7.8
31emb|AL445984.6| Human DNA sequence from clone RP11-360A9 on chro... 40 7.8
32emb|AL357032.13| Human DNA sequence from clone RP11-432M2 on chr... 40 7.8
33gb|AC107608.6| Rattus norvegicus 1 BAC CH230-204P6 (Children's H... 40 7.8
34emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in... 40 7.8
35emb|CR762476.2| Human DNA sequence from clone DAAP-57C1 on chrom... 40 7.8
36gb|AC119744.3| Homo sapiens 3 BAC RP11-744O11 (Roswell Park Canc... 40 7.8
37dbj|AK097108.1| Homo sapiens cDNA FLJ39789 fis, clone SPLEN2003160 40 7.8
38gb|AC079322.5| Homo sapiens chromosome 15, clone RP11-1007O24, c... 40 7.8
39dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 40 7.8
40gb|AC104816.4| Homo sapiens BAC clone RP11-690I4 from 4, complet... 40 7.8
41gb|AC016659.39| Homo sapiens chromosome 15 clone RP11-386P20, co... 40 7.8
42gb|S66117.1| RAD23 [Saccharomyces cerevisiae, mRNA, 1601 nt] 40 7.8
43gb|S65964.1| ARC: TIF51A...UTR2 [Saccharomyces cerevisiae, Genom... 40 7.8
44emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in l... 40 7.8
45gb|AC153419.13| Mus musculus 10 BAC RP23-291D21 (Roswell Park Ca... 40 7.8
46gb|AC084882.2|AC084882 Homo sapiens chromosome 15 clone RP11-408... 40 7.8
47gb|AC126599.10| Mus musculus chromosome 3, clone RP24-487F9, com... 40 7.8
48gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J... 40 7.8
49gb|U18779.1|SCE8199 Saccharomyces cerevisiae chromosome V cosmid... 40 7.8
50gb|AC023632.19| Homo sapiens chromosome 8, clone RP11-267M23, co... 40 7.8
51gb|AC108860.14| Homo sapiens chromosome 8, clone RP11-22C11, com... 40 7.8
52gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q2... 40 7.8
53gb|AC154762.2| Mus musculus BAC clone RP24-418J10 from 16, compl... 40 7.8
54emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in... 40 7.8
55emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in... 40 7.8
56emb|CR847970.10| Zebrafish DNA sequence from clone DKEY-220D24 i... 40 7.8
57gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.31... 40 7.8
58emb|BX000485.4| Zebrafish DNA sequence from clone CH211-142G3, c... 40 7.8
59emb|AL928821.6| Zebrafish DNA sequence from clone CH211-127N10, ... 40 7.8
60emb|AL671782.5| Mouse DNA sequence from clone RP23-102I3 on chro... 40 7.8
61emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chr... 40 7.8
62gb|L22173.1|YSCRAD23CY Saccharomyces cerevisiae aminonitrophenyl... 40 7.8
63gb|L22172.1|YSCRAD23A Saccharomyces cerevisiae UV excision repai... 40 7.8
64gb|L25428.1|YSCRAD23AA Saccharomyces cerevisiae DNA repair prote... 40 7.8
65dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                     
Query: 309     ccaatatgatacagatgaaaagaatcgtgtacccatat 346
               ||||||||||||||||||||||||||||||| ||||||
Sbjct: 5797671 ccaatatgatacagatgaaaagaatcgtgtagccatat 5797708



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 548     ggggctccaaaatatggcagtttc 571
               ||||||||||||||||||||||||
Sbjct: 5797926 ggggctccaaaatatggcagtttc 5797949



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/66 (84%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                           
Query: 41      tctctactacagtcttctccgacctctaccaaaacgatcacaaaactagcggaacaaaat 100
               ||||||||||| || ||||| ||||  |||||| | | |||||||||| | |||||||||
Sbjct: 5797370 tctctactacaatcatctccaacct--accaaagcaaccacaaaactaacagaacaaaat 5797427

                     
Query: 101     ttcaag 106
               ||||||
Sbjct: 5797428 ttcaag 5797433



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 445     ccaacagcaatccacctctccagtaagcaaatgaat 480
               ||||||||||||  |||||||||| | |||||||||
Sbjct: 5797825 ccaacagcaatcagcctctccagtgaacaaatgaat 5797860
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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 309   ccaatatgatacagatgaaaagaatcgtgtacccatat 346
             ||||||||||||||||||||||||||||||| ||||||
Sbjct: 26501 ccaatatgatacagatgaaaagaatcgtgtagccatat 26538



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 548   ggggctccaaaatatggcagtttc 571
             ||||||||||||||||||||||||
Sbjct: 26756 ggggctccaaaatatggcagtttc 26779



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/66 (84%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                         
Query: 41    tctctactacagtcttctccgacctctaccaaaacgatcacaaaactagcggaacaaaat 100
             ||||||||||| || ||||| ||||  |||||| | | |||||||||| | |||||||||
Sbjct: 26200 tctctactacaatcatctccaacct--accaaagcaaccacaaaactaacagaacaaaat 26257

                   
Query: 101   ttcaag 106
             ||||||
Sbjct: 26258 ttcaag 26263



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 445   ccaacagcaatccacctctccagtaagcaaatgaat 480
             ||||||||||||  |||||||||| | |||||||||
Sbjct: 26655 ccaacagcaatcagcctctccagtgaacaaatgaat 26690
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 309   ccaatatgatacagatgaaaagaatcgtgtacccatat 346
             ||||||||||||||||||||||||||||||| ||||||
Sbjct: 33500 ccaatatgatacagatgaaaagaatcgtgtagccatat 33463



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 548   ggggctccaaaatatggcagtttc 571
             ||||||||||||||||||||||||
Sbjct: 33245 ggggctccaaaatatggcagtttc 33222



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/66 (84%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                         
Query: 41    tctctactacagtcttctccgacctctaccaaaacgatcacaaaactagcggaacaaaat 100
             ||||||||||| || ||||| ||||  |||||| | | |||||||||| | |||||||||
Sbjct: 33801 tctctactacaatcatctccaacct--accaaagcaaccacaaaactaacagaacaaaat 33744

                   
Query: 101   ttcaag 106
             ||||||
Sbjct: 33743 ttcaag 33738



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 445   ccaacagcaatccacctctccagtaagcaaatgaat 480
             ||||||||||||  |||||||||| | |||||||||
Sbjct: 33346 ccaacagcaatcagcctctccagtgaacaaatgaat 33311
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                     
Query: 309     ccaatatgatacagatgaaaagaatcgtgtacccatat 346
               ||||||||||||||||||||||||||||||| ||||||
Sbjct: 5796884 ccaatatgatacagatgaaaagaatcgtgtagccatat 5796921



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 548     ggggctccaaaatatggcagtttc 571
               ||||||||||||||||||||||||
Sbjct: 5797139 ggggctccaaaatatggcagtttc 5797162



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/66 (84%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                           
Query: 41      tctctactacagtcttctccgacctctaccaaaacgatcacaaaactagcggaacaaaat 100
               ||||||||||| || ||||| ||||  |||||| | | |||||||||| | |||||||||
Sbjct: 5796583 tctctactacaatcatctccaacct--accaaagcaaccacaaaactaacagaacaaaat 5796640

                     
Query: 101     ttcaag 106
               ||||||
Sbjct: 5796641 ttcaag 5796646



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 445     ccaacagcaatccacctctccagtaagcaaatgaat 480
               ||||||||||||  |||||||||| | |||||||||
Sbjct: 5797038 ccaacagcaatcagcctctccagtgaacaaatgaat 5797073
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>gb|AY106648.1| Zea mays PCO066900 mRNA sequence
          Length = 591

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Plus

                                                                       
Query: 41  tctctactacagtcttctccgacctctaccaaaacgatcacaaaactagcggaacaaaat 100
           ||||||||||| || ||||| ||||  |||||| | |||||||||||| | |||||||||
Sbjct: 107 tctctactacaatcatctccaacct--accaaatcaatcacaaaactaccagaacaaaat 164

                
Query: 101 ttcaa 105
           |||||
Sbjct: 165 ttcaa 169



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 313 tatgatacagatgaaaagaatcgtgtacccatatgatacagat 355
           |||||||||||||  |||||| |||| ||| ||||||||||||
Sbjct: 373 tatgatacagatggtaagaattgtgttcccntatgatacagat 415



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  ttgtaacaatatcctgtaggt 22
          |||||||||||||||||||||
Sbjct: 67 ttgtaacaatatcctgtaggt 87
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>gb|AY106288.1| Zea mays PCO089569 mRNA sequence
          Length = 1052

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 308 accaatatgatacagatgaaaagaatcgtgtacccatatgatacagat 355
           ||||||||||||||||||  |||||| |||| ||| |||| |||||||
Sbjct: 778 accaatatgatacagatggtaagaattgtgttcccctatggtacagat 731



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 550 ggctccaaaatatggcagttt 570
           |||||||||||||||||||||
Sbjct: 543 ggctccaaaatatggcagttt 523
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>emb|CR623368.1| full-length cDNA clone CS0DI032YP14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 768

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  aacaaaatttcaagaaggaaaaaagaa 119
           |||||||||||||||||||| ||||||
Sbjct: 377 aacaaaatttcaagaaggaataaagaa 403
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>emb|CR606945.1| full-length cDNA clone CS0DF015YP05 of Fetal brain of Homo sapiens
           (human)
          Length = 1793

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  aacaaaatttcaagaaggaaaaaagaa 119
           |||||||||||||||||||| ||||||
Sbjct: 939 aacaaaatttcaagaaggaataaagaa 965
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>ref|XM_937707.1| PREDICTED: Homo sapiens hypothetical protein LOC648639 (LOC648639),
            mRNA
          Length = 4998

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 93   aacaaaatttcaagaaggaaaaaagaa 119
            |||||||||||||||||||| ||||||
Sbjct: 1806 aacaaaatttcaagaaggaataaagaa 1832
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>gb|AC000095.5| Homo sapiens Chromosome 22q11.2 Fosmid Clone f41c7 In DGCR Region,
            complete sequence
          Length = 43728

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 93   aacaaaatttcaagaaggaaaaaagaa 119
            |||||||||||||||||||| ||||||
Sbjct: 4611 aacaaaatttcaagaaggaataaagaa 4637
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>gb|AC000069.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 103a2 In DGCR Region,
             complete sequence
          Length = 39859

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 93    aacaaaatttcaagaaggaaaaaagaa 119
             |||||||||||||||||||| ||||||
Sbjct: 39413 aacaaaatttcaagaaggaataaagaa 39439
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>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 47   ctacagtcttctccgacctcta 68
            ||||||||||||||||||||||
Sbjct: 4023 ctacagtcttctccgacctcta 4044
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>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0069I13, complete sequence
          Length = 94252

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 47    ctacagtcttctccgacctcta 68
             ||||||||||||||||||||||
Sbjct: 40821 ctacagtcttctccgacctcta 40842
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>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 131   aaaaataaacattataaactgt 152
             ||||||||||||||||||||||
Sbjct: 75602 aaaaataaacattataaactgt 75623
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 47      ctacagtcttctccgacctcta 68
               ||||||||||||||||||||||
Sbjct: 2171592 ctacagtcttctccgacctcta 2171613
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>emb|BX537274.3| Zebrafish DNA sequence from clone DKEY-103L3 in linkage group 13,
            complete sequence
          Length = 151298

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 130  taaaaataaacattataaactg 151
            ||||||||||||||||||||||
Sbjct: 1316 taaaaataaacattataaactg 1337
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>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14,
           complete sequence
          Length = 164299

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 130 taaaaataaacattataaactg 151
           ||||||||||||||||||||||
Sbjct: 685 taaaaataaacattataaactg 664
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>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete
             sequence
          Length = 81586

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 94    acaaaatttcaagaaggaaaaaagaatat 122
             |||||||||| |||| |||||||||||||
Sbjct: 80059 acaaaatttccagaaagaaaaaagaatat 80031
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>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete
             sequence
          Length = 141895

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   aagaaggaaaaaagaatatgt 124
             |||||||||||||||||||||
Sbjct: 27258 aagaaggaaaaaagaatatgt 27278
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>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159706

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    aaaatttcaagaaggaaaaaa 116
             |||||||||||||||||||||
Sbjct: 97785 aaaatttcaagaaggaaaaaa 97805
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>gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosome 5, complete sequence
          Length = 229020

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    aaaagaatgaccaaccaata 314
              ||||||||||||||||||||
Sbjct: 192366 aaaagaatgaccaaccaata 192385
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>gb|AY693018.1| Saccharomyces cerevisiae clone FLH112838.01X YEL037C gene, complete
           cds
          Length = 1197

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aaaatttcaagaaggaaaaa 115
           ||||||||||||||||||||
Sbjct: 20  aaaatttcaagaaggaaaaa 39
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>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence
          Length = 242126

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    aaaagaatgaccaaccaata 314
              ||||||||||||||||||||
Sbjct: 116625 aaaagaatgaccaaccaata 116644
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>gb|AC124594.4| Mus musculus BAC clone RP23-10F19 from chromosome 15, complete sequence
          Length = 191302

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    aaaagaatgaccaaccaata 314
              ||||||||||||||||||||
Sbjct: 156581 aaaagaatgaccaaccaata 156600
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>gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, complete sequence
          Length = 193434

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    ctacctccattcttcaccgtgatg 187
              ||||||||||||||||| ||||||
Sbjct: 190873 ctacctccattcttcacagtgatg 190896
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>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence
          Length = 166948

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     tctctactacagtcttctcc 60
              ||||||||||||||||||||
Sbjct: 112186 tctctactacagtcttctcc 112205
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>emb|Z81517.1|CEF28B1 Caenorhabditis elegans Cosmid F28B1, complete sequence
          Length = 29917

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   cattcttcaccgtgatgttc 190
             ||||||||||||||||||||
Sbjct: 22745 cattcttcaccgtgatgttc 22764
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>gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, complete sequence
          Length = 215747

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 498  tcagttcagtgtgtctacaccatt 521
            ||||||| ||||||||||||||||
Sbjct: 5946 tcagttctgtgtgtctacaccatt 5969
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>ref|XM_734715.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000253.00.0)
           partial mRNA
          Length = 351

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  aaactagcggaacaaaattt 102
           ||||||||||||||||||||
Sbjct: 22  aaactagcggaacaaaattt 41
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>ref|XM_675022.1| Plasmodium berghei strain ANKA eukaryotic translation initiation
           factor 2 gamma subunit (PB000776.00.0) partial mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  aaactagcggaacaaaattt 102
           ||||||||||||||||||||
Sbjct: 22  aaactagcggaacaaaattt 41
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>emb|AL445984.6| Human DNA sequence from clone RP11-360A9 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 181419

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     aaaatttcaagaaggaaaaaagaa 119
              |||||||||| |||||||||||||
Sbjct: 119473 aaaatttcaaaaaggaaaaaagaa 119450
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>emb|AL357032.13| Human DNA sequence from clone RP11-432M2 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 115438

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 309   ccaatatgatacagatgaaaagaa 332
             |||||||||||| |||||||||||
Sbjct: 79121 ccaatatgatactgatgaaaagaa 79144
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>gb|AC107608.6| Rattus norvegicus 1 BAC CH230-204P6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 225030

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aagaaggaaaaaagaatatg 123
              ||||||||||||||||||||
Sbjct: 116703 aagaaggaaaaaagaatatg 116722
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>emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in linkage group 11,
             complete sequence
          Length = 212880

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gtaaaaataaacattataaa 148
             ||||||||||||||||||||
Sbjct: 95158 gtaaaaataaacattataaa 95177
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>emb|CR762476.2| Human DNA sequence from clone DAAP-57C1 on chromosome 6, complete
             sequence
          Length = 95554

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   agctacctccattcttcacc 181
             ||||||||||||||||||||
Sbjct: 15929 agctacctccattcttcacc 15948
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>gb|AC119744.3| Homo sapiens 3 BAC RP11-744O11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100400

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   agaaggaaaaaagaatatgt 124
             ||||||||||||||||||||
Sbjct: 69574 agaaggaaaaaagaatatgt 69555
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>dbj|AK097108.1| Homo sapiens cDNA FLJ39789 fis, clone SPLEN2003160
          Length = 2246

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  aatttcaagaaggaaaaaag 117
           ||||||||||||||||||||
Sbjct: 214 aatttcaagaaggaaaaaag 195
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>gb|AC079322.5| Homo sapiens chromosome 15, clone RP11-1007O24, complete sequence
          Length = 171550

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   ggaaaaaagaatatgtggga 128
             ||||||||||||||||||||
Sbjct: 84072 ggaaaaaagaatatgtggga 84091
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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    accaaccaatatgatacaga 323
              ||||||||||||||||||||
Sbjct: 961979 accaaccaatatgatacaga 961998
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>gb|AC104816.4| Homo sapiens BAC clone RP11-690I4 from 4, complete sequence
          Length = 169243

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     aaaatttcaagaaggaaaaa 115
              ||||||||||||||||||||
Sbjct: 134971 aaaatttcaagaaggaaaaa 134952
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>gb|AC016659.39| Homo sapiens chromosome 15 clone RP11-386P20, complete sequence
          Length = 181470

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ggaaaaaagaatatgtggga 128
             ||||||||||||||||||||
Sbjct: 83472 ggaaaaaagaatatgtggga 83453
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>gb|S66117.1| RAD23 [Saccharomyces cerevisiae, mRNA, 1601 nt]
          Length = 1601

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aaaatttcaagaaggaaaaa 115
           ||||||||||||||||||||
Sbjct: 224 aaaatttcaagaaggaaaaa 243
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>gb|S65964.1| ARC: TIF51A...UTR2 [Saccharomyces cerevisiae, Genomic, 7 genes, 7529
            nt]
          Length = 7529

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aaaatttcaagaaggaaaaa 115
            ||||||||||||||||||||
Sbjct: 3223 aaaatttcaagaaggaaaaa 3242
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>emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in linkage group 11,
             complete sequence
          Length = 211406

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   aaaagaatgaccaaccaatatgat 318
             ||||||||||||||| ||||||||
Sbjct: 37260 aaaagaatgaccaacaaatatgat 37283
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>gb|AC153419.13| Mus musculus 10 BAC RP23-291D21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 199606

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   ctacctccattcttcaccgtgatg 187
             ||||||||||||||||| ||||||
Sbjct: 69923 ctacctccattcttcacagtgatg 69946
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>gb|AC084882.2|AC084882 Homo sapiens chromosome 15 clone RP11-408J6 map 15q21.1, complete
             sequence
          Length = 193804

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aagaaggaaaaaagaatatg 123
             ||||||||||||||||||||
Sbjct: 45694 aagaaggaaaaaagaatatg 45675
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>gb|AC126599.10| Mus musculus chromosome 3, clone RP24-487F9, complete sequence
          Length = 186281

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 498   tcagttcagtgtgtctacaccatt 521
             ||||||| ||||||||||||||||
Sbjct: 83935 tcagttctgtgtgtctacaccatt 83912
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>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete
              sequence
          Length = 175001

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    aagaaggaaaaaagaatatg 123
              ||||||||||||||||||||
Sbjct: 141174 aagaaggaaaaaagaatatg 141155
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>gb|U18779.1|SCE8199 Saccharomyces cerevisiae chromosome V cosmid 8199, 8334, and 9871
          Length = 36872

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaaatttcaagaaggaaaaa 115
             ||||||||||||||||||||
Sbjct: 29558 aaaatttcaagaaggaaaaa 29539
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>gb|AC023632.19| Homo sapiens chromosome 8, clone RP11-267M23, complete sequence
          Length = 183859

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    agttcagtgtgtctacacca 519
              ||||||||||||||||||||
Sbjct: 182439 agttcagtgtgtctacacca 182420
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>gb|AC108860.14| Homo sapiens chromosome 8, clone RP11-22C11, complete sequence
          Length = 103481

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  agttcagtgtgtctacacca 519
            ||||||||||||||||||||
Sbjct: 4959 agttcagtgtgtctacacca 4940
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>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence
          Length = 128978

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   tgatagttatactactatccaaaa 298
             |||||||||||||| |||||||||
Sbjct: 41299 tgatagttatactagtatccaaaa 41322
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>gb|AC154762.2| Mus musculus BAC clone RP24-418J10 from 16, complete sequence
          Length = 155379

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    aaaatttcaagaaggaaaaaagaa 119
             |||||||||||||| |||||||||
Sbjct: 47408 aaaatttcaagaagaaaaaaagaa 47385
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>emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in linkage group 4,
              complete sequence
          Length = 201932

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    taaaaataaacattataaac 149
              ||||||||||||||||||||
Sbjct: 187286 taaaaataaacattataaac 187305
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>emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in linkage group 25,
             complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   aaagaatgaccaaccaatat 315
             ||||||||||||||||||||
Sbjct: 81961 aaagaatgaccaaccaatat 81980
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>emb|CR847970.10| Zebrafish DNA sequence from clone DKEY-220D24 in linkage group 11,
             complete sequence
          Length = 161576

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gtaaaaataaacattataaa 148
             ||||||||||||||||||||
Sbjct: 38274 gtaaaaataaacattataaa 38293
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>gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence
          Length = 163218

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    aatttcaagaaggaaaaaag 117
             ||||||||||||||||||||
Sbjct: 87798 aatttcaagaaggaaaaaag 87779
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>emb|BX000485.4| Zebrafish DNA sequence from clone CH211-142G3, complete sequence
          Length = 159843

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    aaagaatgaccaaccaatat 315
              ||||||||||||||||||||
Sbjct: 150875 aaagaatgaccaaccaatat 150894
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>emb|AL928821.6| Zebrafish DNA sequence from clone CH211-127N10, complete sequence
          Length = 153232

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   aaaagaatgaccaaccaatatgat 318
             ||||||||||||||| ||||||||
Sbjct: 39094 aaaagaatgaccaacaaatatgat 39117
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>emb|AL671782.5| Mouse DNA sequence from clone RP23-102I3 on chromosome X, complete
              sequence
          Length = 192583

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aaatttcaagaaggaaaaaa 116
              ||||||||||||||||||||
Sbjct: 102339 aaatttcaagaaggaaaaaa 102320
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>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete
              sequence
          Length = 175639

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aaatttcaagaaggaaaaaa 116
              ||||||||||||||||||||
Sbjct: 106176 aaatttcaagaaggaaaaaa 106157
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>gb|L22173.1|YSCRAD23CY Saccharomyces cerevisiae aminonitrophenyl propanediol (ANP1), UV
            excision repair protein (RAD23), cytochrome c isozyme
            (CYC7) genes, complete cds
          Length = 7529

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aaaatttcaagaaggaaaaa 115
            ||||||||||||||||||||
Sbjct: 3223 aaaatttcaagaaggaaaaa 3242
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>gb|L22172.1|YSCRAD23A Saccharomyces cerevisiae UV excision repair protein (RAD23) gene,
           complete cds
          Length = 1500

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aaaatttcaagaaggaaaaa 115
           ||||||||||||||||||||
Sbjct: 163 aaaatttcaagaaggaaaaa 182
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>gb|L25428.1|YSCRAD23AA Saccharomyces cerevisiae DNA repair protein (RAD23) gene, complete
           cds
          Length = 2119

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aaaatttcaagaaggaaaaa 115
           ||||||||||||||||||||
Sbjct: 432 aaaatttcaagaaggaaaaa 451
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>dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1198A1
          Length = 195623

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    agttcagtgtgtctacacca 519
              ||||||||||||||||||||
Sbjct: 139654 agttcagtgtgtctacacca 139635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,527,575
Number of Sequences: 3902068
Number of extensions: 6527575
Number of successful extensions: 121178
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120897
Number of HSP's gapped (non-prelim): 281
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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