ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21e24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506198.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.29 mRNA Length = 1626 Score = 335 bits (169), Expect = 5e-89 Identities = 286/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 1306 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 1247 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 1246 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 1187 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 1186 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 1127 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 1126 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 1067 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 1066 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 1007 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 1006 agatttcttctgatattttgtcagag 981
>ref|XM_476866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2005 Score = 335 bits (169), Expect = 5e-89 Identities = 286/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 1647 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 1588 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 1587 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 1528 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 1527 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 1468 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 1467 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 1408 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 1407 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 1348 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 1347 agatttcttctgatattttgtcagag 1322
>dbj|AK070512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055B17, full insert sequence Length = 2023 Score = 335 bits (169), Expect = 5e-89 Identities = 286/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 1665 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 1606 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 1605 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 1546 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 1545 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 1486 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 1485 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 1426 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 1425 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 1366 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 1365 agatttcttctgatattttgtcagag 1340
>dbj|AK062119.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C09, full insert sequence Length = 1328 Score = 335 bits (169), Expect = 5e-89 Identities = 286/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 1011 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 952 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 951 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 892 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 891 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 832 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 831 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 772 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 771 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 712 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 711 agatttcttctgatattttgtcagag 686
>dbj|AK060932.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B03, full insert sequence Length = 1105 Score = 335 bits (169), Expect = 5e-89 Identities = 286/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 851 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 792 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 791 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 732 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 731 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 672 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 671 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 612 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 611 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 552 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 551 agatttcttctgatattttgtcagag 526
>dbj|AK066918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N03, full insert sequence Length = 1625 Score = 327 bits (165), Expect = 1e-86 Identities = 285/326 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 1305 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 1246 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 1245 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 1186 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||| ||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 1185 ggaaagggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 1126 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 1125 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 1066 Query: 241 tcgtatagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgc 300 | || |||||||||||||||||||| ||||| ||| | ||||||||||| || ||||||| Sbjct: 1065 ttgtgtagacgaaaacggcatctacctccaatttgttggccattttagcggccgaaatgc 1006 Query: 301 agatctctnctgatattttgtcagag 326 |||| ||| ||||||||||||||||| Sbjct: 1005 agatttcttctgatattttgtcagag 980
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 278 bits (140), Expect = 1e-71 Identities = 238/271 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 4303311 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 4303252 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 4303251 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 4303192 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 4303191 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 4303132 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 4303131 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 4303072 Query: 241 tcgtatagacgaaaacggcatctacttccaa 271 | || |||||||||||||||||||| ||||| Sbjct: 4303071 ttgtgtagacgaaaacggcatctacctccaa 4303041 Score = 63.9 bits (32), Expect = 3e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 280 ccattttagcagcagaaatgcagatctctnctgatattttgtcagag 326 |||||||||| || ||||||||||| ||| ||||||||||||||||| Sbjct: 4302856 ccattttagcggccgaaatgcagatttcttctgatattttgtcagag 4302810
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 278 bits (140), Expect = 1e-71 Identities = 238/271 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||| || | Sbjct: 124365 tggactgcagcatgtcggagagcgcgatgacaaggtcgccggactggatcatgcccctgg 124306 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||||||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 124305 ccttgagcagcgagaaggtacggttcaggttgctctccatgtcgtccgagaagctgaggc 124246 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||||||||||||||||||||||| |||||||||||| || |||||| | |||| Sbjct: 124245 ggaaggggatgaggccccattggaggttcaatcgtctcctcacagatgtcgaggtcgtga 124186 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacaccct 240 |||||||||| ||||||||||| |||||||| || |||| || ||||||||| || | Sbjct: 124185 aggcgaagatcgggcagtcaggacggcaccgcgagagcagtgaggccatgtggccagtgt 124126 Query: 241 tcgtatagacgaaaacggcatctacttccaa 271 | || |||||||||||||||||||| ||||| Sbjct: 124125 ttgtgtagacgaaaacggcatctacctccaa 124095 Score = 63.9 bits (32), Expect = 3e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 280 ccattttagcagcagaaatgcagatctctnctgatattttgtcagag 326 |||||||||| || ||||||||||| ||| ||||||||||||||||| Sbjct: 123910 ccattttagcggccgaaatgcagatttcttctgatattttgtcagag 123864
>gb|AY106719.1| Zea mays PCO096996 mRNA sequence Length = 1611 Score = 240 bits (121), Expect = 2e-60 Identities = 204/232 (87%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| |||||||| ||||| || |||| ||||||||| || | Sbjct: 1255 tggactgcagcatgtccgagagggcgatcacgaggtccccagactggatcatgcccctgg 1196 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 ||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| Sbjct: 1195 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcgtccgagaaggcgaggc 1136 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtga 180 |||||||||| |||||||| || |||||||| || ||||| ||||||||||| | |||| Sbjct: 1135 ggaaggggatcaggccccactgcaggttcagccgcctcctgacggacgtcgacgtcgtga 1076 Query: 181 aggcgaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtg 232 ||||||||| |||||||| ||||||||||| || |||| ||| |||||||| Sbjct: 1075 aggcgaagaccgggcagtcggggcggcaccgcgagagcagggaggccatgtg 1024
>gb|AY106461.1| Zea mays PCO067393 mRNA sequence Length = 507 Score = 119 bits (60), Expect = 6e-24 Identities = 131/155 (84%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| ||||| |||||||||||||| || |||| | |||||| || | Sbjct: 157 tggactgcagcatgtcggagagcgcgatcaccaggtctccagactgcaccatgcccctgg 98 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 |||| |||||||||||||||||||| ||||||||||||||||| || || | || | Sbjct: 97 ccttcagcagggagaaggtgcggttgaggttgctctccatgtcgtcggactcgctcagcc 38 Query: 121 ggaaggggatgaggccccattggaggttcagtcgt 155 |||| |||||||||||| | |||||||||| |||| Sbjct: 37 ggaacgggatgaggcccnactggaggttcactcgt 3
>ref|NM_113196.2| Arabidopsis thaliana pyruvate kinase AT3G22960 mRNA, complete cds Length = 2139 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 1897 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 1838 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 1837 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 1778 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 1777 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 1718 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 1717 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 1658 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 1657 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 1598 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 1597 tcttctgagattttgtc 1581
>gb|AY056196.1| Arabidopsis thaliana putative pyruvate kinase (At3g22960) mRNA, partial cds Length = 1190 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 949 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 890 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 889 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 830 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 829 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 770 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 769 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 710 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 709 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 650 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 649 tcttctgagattttgtc 633
>gb|AY058084.1| Arabidopsis thaliana AT3g22960/F5N5_15 mRNA, complete cds Length = 2124 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 1898 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 1839 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 1838 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 1779 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 1778 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 1719 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 1718 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 1659 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 1658 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 1599 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 1598 tcttctgagattttgtc 1582
>gb|AY056793.1| Arabidopsis thaliana AT3g22960/F5N5_15 mRNA, complete cds Length = 2096 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 1871 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 1812 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 1811 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 1752 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 1751 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 1692 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 1691 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 1632 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 1631 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 1572 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 1571 tcttctgagattttgtc 1555
>gb|AY085149.1| Arabidopsis thaliana clone 13351 mRNA, complete sequence Length = 2118 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 1893 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 1834 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 1833 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 1774 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 1773 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 1714 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 1713 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 1654 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 1653 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 1594 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 1593 tcttctgagattttgtc 1577
>gb|BT002329.1| Arabidopsis thaliana clone C104993 putative pyruvate kinase (At3g22960) mRNA, complete cds Length = 1822 Score = 71.9 bits (36), Expect = 1e-09 Identities = 246/317 (77%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 1763 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 1704 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 1703 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 1644 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 1643 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 1584 Query: 186 aagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgta 245 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 1583 aagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgtg 1524 Query: 246 tagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagatc 305 || |||||||| || || ||| | | ||| |||||||||||||||| || | |||||| Sbjct: 1523 taaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagatc 1464 Query: 306 tctnctgatattttgtc 322 ||| |||| |||||||| Sbjct: 1463 tcttctgagattttgtc 1447
>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5 Length = 71327 Score = 71.9 bits (36), Expect = 1e-09 Identities = 159/200 (79%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 53684 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 53625 Query: 66 agcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaag 125 || | ||||| || ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 53624 agtaacgagaatgttttgttcaagttgctttccatgtcgtctgagaagctgagacggaat 53565 Query: 126 gggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggcg 185 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 53564 gggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagca 53505 Query: 186 aagattgggcagtcagggcg 205 ||||| |||||||| ||||| Sbjct: 53504 aagatcgggcagtccgggcg 53485 Score = 40.1 bits (20), Expect = 4.3 Identities = 37/43 (86%) Strand = Plus / Minus Query: 280 ccattttagcagcagaaatgcagatctctnctgatattttgtc 322 ||||||||||||| || | ||||||||| |||| |||||||| Sbjct: 53334 ccattttagcagctgagttacagatctcttctgagattttgtc 53292
>emb|BX826206.1|CNS0A7HY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 65.9 bits (33), Expect = 8e-08 Identities = 247/318 (77%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 6 tgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcgccttg 65 ||||||||||| |||| |||||||| |||||||| || |||||||| ||||| | || Sbjct: 449 tgcagcatgtccgagactgcgatcacgaggtcaccagatttgatcatacctcttgatttc 390 Query: 66 agcagggagaa-ggtgcggttcaggttgctctccatgtcatctgagaaagtgaggcggaa 124 || | ||||| ||| ||||| |||||| |||||||| |||||||| |||| ||||| Sbjct: 389 agtaacgagaatggttttgttcaagttgctttccatgtcgtctgagaagctgagacggaa 330 Query: 125 ggggatgaggccccattggaggttcagtcgtctcctcacggacgtcgagtttgtgaaggc 184 ||||| || |||||||| ||||| | ||||| ||||| || || | | ||||||| || Sbjct: 329 tgggataagtccccattgtaggtttaagcgtcttctcactgaggttgtggttgtgaaagc 270 Query: 185 gaagattgggcagtcagggcggcaccgngaaagcaaggaagccatgtggacacccttcgt 244 ||||| |||||||| ||||| || || || | || || |||||||| | | | | || Sbjct: 269 aaagatcgggcagtccgggcgacatcgggagaccagtgatgccatgtgtccgctcgttgt 210 Query: 245 atagacgaaaacggcatctacttccaacttgntagccattttagcagcagaaatgcagat 304 || |||||||| || || ||| | | ||| |||||||||||||||| || | ||||| Sbjct: 209 gtaaacgaaaaccgcgtccactccaagattgttagccattttagcagctgagttacagat 150 Query: 305 ctctnctgatattttgtc 322 |||| |||| |||||||| Sbjct: 149 ctcttctgagattttgtc 132
>emb|Z28373.1|NTPKPAMR N.tabacum mRNA for pyruvate kinase (plastid isozyme) Length = 2234 Score = 58.0 bits (29), Expect = 2e-05 Identities = 125/157 (79%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| || | ||| || | |||||||| |||||||||||||| | | Sbjct: 1817 tggactgcagcatgtcggaaacagcaatgatgaggtcacctgacttgatcatgccccgag 1758 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 | || || | |||||| || ||| |||||||| ||||| ||||| |||||| | | || Sbjct: 1757 cttttagtaaggagaatgtcttgttgaggttgctttccatatcatcggagaaactcaagc 1698 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtct 157 |||| || || || |||||||| |||||||| ||||| Sbjct: 1697 ggaaaggcattagaccccattgcaggttcaggcgtct 1661
>emb|AJ718125.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT3-44-420, cultivar Bright Yellow 2 Length = 361 Score = 58.0 bits (29), Expect = 2e-05 Identities = 125/157 (79%) Strand = Plus / Minus Query: 1 tggactgcagcatgtcagagagagcgatcaccaggtcaccggacttgatcatgcctctcg 60 |||||||||||||||| || | ||| || | |||||||| |||||||||||||| | | Sbjct: 279 tggactgcagcatgtcggaaacagcaatgatgaggtcacctgacttgatcatgccccgag 220 Query: 61 ccttgagcagggagaaggtgcggttcaggttgctctccatgtcatctgagaaagtgaggc 120 | || || | |||||| || ||| |||||||| ||||| ||||| |||||| | | || Sbjct: 219 cttttagtaaggagaatgtcttgttgaggttgctttccatatcatcggagaaactcaagc 160 Query: 121 ggaaggggatgaggccccattggaggttcagtcgtct 157 |||| || || || |||||||| |||||||| ||||| Sbjct: 159 ggaaaggcattagaccccattgcaggttcaggcgtct 123
>gb|M64737.1|RCCATPPPB Ricinus communis ATP:pyruvate phosphotransferase (PK-p-beta) mRNA, complete cds Length = 2022 Score = 50.1 bits (25), Expect = 0.004 Identities = 136/173 (78%) Strand = Plus / Minus Query: 36 tcaccggacttgatcatgcctctcgccttgagcagggagaaggtgcggttcaggttgctc 95 ||||| || |||||||| ||||| |||||||||| |||||||| ||| |||||||| Sbjct: 1469 tcacccgatttgatcattcctctagccttgagcaaagagaaggttttgttaaggttgctt 1410 Query: 96 tccatgtcatctgagaaagtgaggcggaaggggatgaggccccattggaggttcagtcgt 155 ||||| ||||| | || | ||||||||||| || |||||||| || | ||||| ||| Sbjct: 1409 tccatatcatcagcaaagctcaggcggaagggtatcaggccccactgtaaattcaggcgt 1350 Query: 156 ctcctcacggacgtcgagtttgtgaaggcgaagattgggcagtcagggcggca 208 |||| || || || | |||| || || ||||||||||||||||| ||||| Sbjct: 1349 ctccgtacagatgtggtagttgtaaaagcaaagattgggcagtcaggccggca 1297
>gb|M64736.1|RCCATPPPA Ricinus communis ATP:pyruvate phosphotransferase (PK-p-alpha) mRNA, complete cds Length = 2115 Score = 50.1 bits (25), Expect = 0.004 Identities = 136/173 (78%) Strand = Plus / Minus Query: 36 tcaccggacttgatcatgcctctcgccttgagcagggagaaggtgcggttcaggttgctc 95 ||||| || |||||||| ||||| |||||||||| |||||||| ||| |||||||| Sbjct: 1811 tcacccgatttgatcattcctctagccttgagcaaagagaaggttttgttaaggttgctt 1752 Query: 96 tccatgtcatctgagaaagtgaggcggaaggggatgaggccccattggaggttcagtcgt 155 ||||| ||||| | || | ||||||||||| || |||||||| || | ||||| ||| Sbjct: 1751 tccatatcatcagcaaagctcaggcggaagggtatcaggccccactgtaaattcaggcgt 1692 Query: 156 ctcctcacggacgtcgagtttgtgaaggcgaagattgggcagtcagggcggca 208 |||| || || || | |||| || || ||||||||||||||||| ||||| Sbjct: 1691 ctccgtacagatgtggtagttgtaaaagcaaagattgggcagtcaggccggca 1639
>gb|AC144643.3| Canis familiaris clone RP81-410C20, complete sequence Length = 115479 Score = 44.1 bits (22), Expect = 0.28 Identities = 30/33 (90%) Strand = Plus / Minus Query: 287 agcagcagaaatgcagatctctnctgatatttt 319 |||| ||||||||||||||||| ||||| |||| Sbjct: 111024 agcaacagaaatgcagatctctgctgatgtttt 110992
>emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chromosome 2, complete sequence Length = 200773 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gccttgagcagggagaaggtg 80 ||||||||||||||||||||| Sbjct: 27336 gccttgagcagggagaaggtg 27316
>gb|AC117251.3| Mus musculus BAC clone RP24-372C12 from chromosome 8, complete sequence Length = 191927 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 attttagcagcagaaatgca 301 |||||||||||||||||||| Sbjct: 77884 attttagcagcagaaatgca 77865
>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24, complete sequence Length = 251421 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 agcagcagaaatgcagatct 306 |||||||||||||||||||| Sbjct: 70882 agcagcagaaatgcagatct 70863
>emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in linkage group 5, complete sequence Length = 200047 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 agcagcagaaatgcagatct 306 |||||||||||||||||||| Sbjct: 9949 agcagcagaaatgcagatct 9930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,279,730 Number of Sequences: 3902068 Number of extensions: 2279730 Number of successful extensions: 35472 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 35416 Number of HSP's gapped (non-prelim): 52 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
