ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550578.1| Oryza sativa (japonica cultivar-group), mRNA 153 8e-34
2gb|AY105296.1| Zea mays PCO103628 mRNA sequence 149 1e-32
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
4dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AK110546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
7dbj|AK073499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
8dbj|AK064353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, co... 44 0.53
12gb|AC092920.7| Homo sapiens 3 BAC RP11-255G21 (Roswell Park Canc... 42 2.1
13gb|AC130807.30| Medicago truncatula clone mth2-13o20, complete s... 42 2.1
14gb|AC135416.39| Medicago truncatula clone mth2-24n16, complete s... 42 2.1
15emb|CR407311.1| Gallus gallus finished cDNA, clone ChEST630a24 42 2.1
16emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in... 42 2.1
17gb|AC079135.6| Homo sapiens BAC clone RP11-122C15 from 2, comple... 42 2.1
18gb|AC019047.7| Homo sapiens BAC clone RP11-83N2 from 2, complete... 42 2.1
19gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 42 2.1
20gb|AC115633.4| Mus musculus BAC clone RP24-361I15 from 16, compl... 42 2.1
21gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.2
22ref|XM_461134.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.2
23gb|AC102091.7| Mus musculus chromosome 18, clone RP23-9K20, comp... 40 8.2
24gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 8.2
25gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, com... 40 8.2
26emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chro... 40 8.2
27ref|XM_571649.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.2
28gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map... 40 8.2
29emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 8.2
30gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosom... 40 8.2
31emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 40 8.2
32gb|AF458981.1| Saccharomyces cerevisiae strain YJM627, partial g... 40 8.2
33gb|AF458980.1| Saccharomyces cerevisiae strain YJM270, partial g... 40 8.2
34gb|AF458979.1| Saccharomyces cerevisiae strain YJM269, partial g... 40 8.2
35gb|AF458978.1| Saccharomyces cerevisiae strain YJM1129, partial ... 40 8.2
36gb|AF458977.1| Saccharomyces cerevisiae strain W303, partial genome 40 8.2
37gb|AF458976.1| Saccharomyces cerevisiae strain SK1, partial genome 40 8.2
38gb|AF458975.1| Saccharomyces cerevisiae strain YJM789, partial g... 40 8.2
39gb|AC108686.3| Homo sapiens X BAC RP11-263A21 (Roswell Park Canc... 40 8.2
40gb|AC160654.3| Pan troglodytes BAC clone CH251-409B17 from chrom... 40 8.2
41gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 8.2
42gb|AC012356.6| Homo sapiens BAC clone RP11-308G12 from 2, comple... 40 8.2
43gb|AC087902.43| Mus musculus strain C57BL/6J chromosome 15 clone... 40 8.2
44gb|AC131662.4| Mus musculus BAC clone RP23-257H24 from chromosom... 40 8.2
45dbj|BS000182.1| Pan troglodytes chromosome 22 clone:PTB-301D17, ... 40 8.2
46dbj|AB073160.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 40 8.2
47gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, compl... 40 8.2
48emb|AL359238.4|CNS05TEP Human chromosome 14 DNA sequence BAC R-4... 40 8.2
49gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complet... 40 8.2
50gb|DQ115393.1| Saccharomyces cerevisiae Pol1p (POL1) gene, parti... 40 8.2 
>ref|XM_550578.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score =  153 bits (77), Expect = 8e-34
 Identities = 152/177 (85%)
 Strand = Plus / Minus

                                                                       
Query: 427 taaaacgagcaaactgcagccgcagctgaggtgaactgcggtcatgttcatcaaacttat 486
           |||||||||||||||| ||||| |  || |||||| |||| ||||||||||| || || |
Sbjct: 832 taaaacgagcaaactggagccgtaaatggggtgaattgcgatcatgttcatcgaatttgt 773

                                                                       
Query: 487 agccttgcaaagcttccatggcaatagctgcttgagcagcattagcaaaatcaacaaaac 546
           ||||||||||||| ||||| |||||||| ||||||  |||| |  |||||||||||||||
Sbjct: 772 agccttgcaaagcatccatagcaatagcagcttgactagcagtttcaaaatcaacaaaac 713

                                                                    
Query: 547 agagaacgattgggtcaccaccaggatgtcttggttctttgtttacaagtctcacct 603
           |||| |  ||||| || |||||||||||||||| ||||||| |||||||||||||||
Sbjct: 712 agagtagaattggatccccaccaggatgtcttgcttctttgcttacaagtctcacct 656
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>gb|AY105296.1| Zea mays PCO103628 mRNA sequence
          Length = 945

 Score =  149 bits (75), Expect = 1e-32
 Identities = 150/175 (85%)
 Strand = Plus / Minus

                                                                       
Query: 429 aaacgagcaaactgcagccgcagctgaggtgaactgcggtcatgttcatcaaacttatag 488
           ||||||||||||||||||||||| |  |||||| |||| ||||| || ||||||||||||
Sbjct: 920 aaacgagcaaactgcagccgcagattgggtgaattgcgatcatgctcgtcaaacttatag 861

                                                                       
Query: 489 ccttgcaaagcttccatggcaatagctgcttgagcagcattagcaaaatcaacaaaacag 548
           ||||||||||| ||||  |||||||| | ||| | ||  |  ||||||||||||||||| 
Sbjct: 860 ccttgcaaagcatccaatgcaatagcagattgtgtaggttccgcaaaatcaacaaaacaa 801

                                                                  
Query: 549 agaacgattgggtcaccaccaggatgtcttggttctttgtttacaagtctcacct 603
           || || || |||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 800 aggacaatagggtcaccaccaggatgtttcggttctttgtttacaagtctaacct 746
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                           
Query: 489     ccttgcaaagcttccatggcaatagctgcttgagcagcattagcaaaatcaacaaaacag 548
               ||||||||||| ||||| |||||||| ||||||  |||| |  |||||||||||||||||
Sbjct: 1456097 ccttgcaaagcatccatagcaatagcagcttgactagcagtttcaaaatcaacaaaacag 1456038

                                      
Query: 549     agaacgattgggtcaccaccagg 571
               || |  ||||| || ||||||||
Sbjct: 1456037 agtagaattggatccccaccagg 1456015



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 427     taaaacgagcaaactgcagccgcagctgaggtgaactgcggtcatgttcatcaaacttat 486
               |||||||||||||||| ||||| |  || |||||| |||| ||||||||||| || || |
Sbjct: 1457192 taaaacgagcaaactggagccgtaaatggggtgaattgcgatcatgttcatcgaatttgt 1457133

                    
Query: 487     agcct 491
               |||||
Sbjct: 1457132 agcct 1457128



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 572     atgtcttggttctttgtttacaagtctcacct 603
               |||||||| ||||||| |||||||||||||||
Sbjct: 1455933 atgtcttgcttctttgcttacaagtctcacct 1455902
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 489   ccttgcaaagcttccatggcaatagctgcttgagcagcattagcaaaatcaacaaaacag 548
             ||||||||||| ||||| |||||||| ||||||  |||| |  |||||||||||||||||
Sbjct: 63383 ccttgcaaagcatccatagcaatagcagcttgactagcagtttcaaaatcaacaaaacag 63324

                                    
Query: 549   agaacgattgggtcaccaccagg 571
             || |  ||||| || ||||||||
Sbjct: 63323 agtagaattggatccccaccagg 63301



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 427   taaaacgagcaaactgcagccgcagctgaggtgaactgcggtcatgttcatcaaacttat 486
             |||||||||||||||| ||||| |  || |||||| |||| ||||||||||| || || |
Sbjct: 64478 taaaacgagcaaactggagccgtaaatggggtgaattgcgatcatgttcatcgaatttgt 64419

                  
Query: 487   agcct 491
             |||||
Sbjct: 64418 agcct 64414



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 572   atgtcttggttctttgtttacaagtctcacct 603
             |||||||| ||||||| |||||||||||||||
Sbjct: 63219 atgtcttgcttctttgcttacaagtctcacct 63188
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                          
Query: 489    ccttgcaaagcttccatggcaatagctgcttgagcagcattagcaaaatcaacaaaacag 548
              ||||||||||| ||||| |||||||| ||||||  |||| |  |||||||||||||||||
Sbjct: 164636 ccttgcaaagcatccatagcaatagcagcttgactagcagtttcaaaatcaacaaaacag 164577

                                     
Query: 549    agaacgattgggtcaccaccagg 571
              || |  ||||| || ||||||||
Sbjct: 164576 agtagaattggatccccaccagg 164554



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                          
Query: 427    taaaacgagcaaactgcagccgcagctgaggtgaactgcggtcatgttcatcaaacttat 486
              |||||||||||||||| ||||| |  || |||||| |||| ||||||||||| || || |
Sbjct: 165731 taaaacgagcaaactggagccgtaaatggggtgaattgcgatcatgttcatcgaatttgt 165672

                   
Query: 487    agcct 491
              |||||
Sbjct: 165671 agcct 165667



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 572    atgtcttggttctttgtttacaagtctcacct 603
              |||||||| ||||||| |||||||||||||||
Sbjct: 164472 atgtcttgcttctttgcttacaagtctcacct 164441
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>dbj|AK110546.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B09, full
           insert sequence
          Length = 1197

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 466 ggtcatgttcatcaaacttatagccttgca 495
           ||||||||||||||||||||||||||||||
Sbjct: 903 ggtcatgttcatcaaacttatagccttgca 874
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>dbj|AK073499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E14, full
            insert sequence
          Length = 2450

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 466  ggtcatgttcatcaaacttatagccttgca 495
            ||||||||||||||||||||||||||||||
Sbjct: 1321 ggtcatgttcatcaaacttatagccttgca 1292
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>dbj|AK064353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A10, full
            insert sequence
          Length = 2379

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 466  ggtcatgttcatcaaacttatagccttgca 495
            ||||||||||||||||||||||||||||||
Sbjct: 1246 ggtcatgttcatcaaacttatagccttgca 1217
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 466      ggtcatgttcatcaaacttatagcct 491
                ||||||||||||||||||||||||||
Sbjct: 20331841 ggtcatgttcatcaaacttatagcct 20331816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 466      ggtcatgttcatcaaacttatagcct 491
                ||||||||||||||||||||||||||
Sbjct: 20319119 ggtcatgttcatcaaacttatagcct 20319094
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1439_F07
          Length = 153743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 466    ggtcatgttcatcaaacttatagcct 491
              ||||||||||||||||||||||||||
Sbjct: 110968 ggtcatgttcatcaaacttatagcct 110943



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 466   ggtcatgttcatcaaacttatagcct 491
             ||||||||||||||||||||||||||
Sbjct: 98246 ggtcatgttcatcaaacttatagcct 98221
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>gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, complete sequence
          Length = 210235

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 181   agaaataaatacatctgcaaca 202
             ||||||||||||||||||||||
Sbjct: 90623 agaaataaatacatctgcaaca 90644
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>gb|AC092920.7| Homo sapiens 3 BAC RP11-255G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164878

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   ggagaaataaatacatctgca 199
             |||||||||||||||||||||
Sbjct: 23166 ggagaaataaatacatctgca 23186
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>gb|AC130807.30| Medicago truncatula clone mth2-13o20, complete sequence
          Length = 143832

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 530    agcaaaatcaacaaaacagag 550
              |||||||||||||||||||||
Sbjct: 125307 agcaaaatcaacaaaacagag 125287



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 530   agcaaaatcaacaaaacagag 550
             |||||||||||||||||||||
Sbjct: 17337 agcaaaatcaacaaaacagag 17357
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>gb|AC135416.39| Medicago truncatula clone mth2-24n16, complete sequence
          Length = 126278

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 530   agcaaaatcaacaaaacagag 550
             |||||||||||||||||||||
Sbjct: 51880 agcaaaatcaacaaaacagag 51900
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>emb|CR407311.1| Gallus gallus finished cDNA, clone ChEST630a24
          Length = 986

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 97  caggaaatcaccttgccagaccaag 121
           ||||||||| |||||||||||||||
Sbjct: 802 caggaaatccccttgccagaccaag 778
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>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5, complete
              sequence
          Length = 227940

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    gaaataaatacatctgcaaca 202
              |||||||||||||||||||||
Sbjct: 131349 gaaataaatacatctgcaaca 131329
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>gb|AC079135.6| Homo sapiens BAC clone RP11-122C15 from 2, complete sequence
          Length = 88655

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 102  aatcaccttgccagaccaaggtact 126
            ||||||||| |||||||||||||||
Sbjct: 1695 aatcaccttcccagaccaaggtact 1719
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>gb|AC019047.7| Homo sapiens BAC clone RP11-83N2 from 2, complete sequence
          Length = 165007

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 102    aatcaccttgccagaccaaggtact 126
              ||||||||| |||||||||||||||
Sbjct: 164702 aatcaccttcccagaccaaggtact 164726
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>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence
          Length = 148303

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 530   agcaaaatcaacaaaacagag 550
             |||||||||||||||||||||
Sbjct: 18113 agcaaaatcaacaaaacagag 18133
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>gb|AC115633.4| Mus musculus BAC clone RP24-361I15 from 16, complete sequence
          Length = 135437

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 532    caaaatcaacaaaacagagaa 552
              |||||||||||||||||||||
Sbjct: 121826 caaaatcaacaaaacagagaa 121846
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    gcagccgcagctgaggtgaa 461
              ||||||||||||||||||||
Sbjct: 949030 gcagccgcagctgaggtgaa 949049
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>ref|XM_461134.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F19217g)
            partial mRNA
          Length = 2994

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 517  cttgagcagcattagcaaaatcaacaaa 544
            ||||||||| ||||||||||||| ||||
Sbjct: 2197 cttgagcagtattagcaaaatcaccaaa 2170
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>gb|AC102091.7| Mus musculus chromosome 18, clone RP23-9K20, complete sequence
          Length = 252563

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    aaaatcaacaaaacagagaa 552
              ||||||||||||||||||||
Sbjct: 240426 aaaatcaacaaaacagagaa 240445
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 509     aatagctgcttgagcagcattagc 532
               ||||||||||||||||| ||||||
Sbjct: 5669935 aatagctgcttgagcagaattagc 5669912
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>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence
          Length = 219739

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 533    aaaatcaacaaaacagagaa 552
              ||||||||||||||||||||
Sbjct: 196680 aaaatcaacaaaacagagaa 196661
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>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete
             sequence
          Length = 210326

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   aaaatcaacaaaacagagaa 552
             ||||||||||||||||||||
Sbjct: 49088 aaaatcaacaaaacagagaa 49069
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>ref|XM_571649.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF03190) partial mRNA
          Length = 2278

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 442  gcagccgcagctgaggtgaa 461
            ||||||||||||||||||||
Sbjct: 2114 gcagccgcagctgaggtgaa 2095
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>gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 202316

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   aaaatcaacaaaacagagaa 552
             ||||||||||||||||||||
Sbjct: 86650 aaaatcaacaaaacagagaa 86669
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 517     cttgagcagcattagcaaaatcaacaaa 544
               ||||||||| ||||||||||||| ||||
Sbjct: 1537472 cttgagcagtattagcaaaatcaccaaa 1537445
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>gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosome 13, complete
             sequence
          Length = 193801

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ggtagagggagcaaaagcta 160
             ||||||||||||||||||||
Sbjct: 61662 ggtagagggagcaaaagcta 61681
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ctgcaacaacaaccaaaata 214
              ||||||||||||||||||||
Sbjct: 131114 ctgcaacaacaaccaaaata 131095
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>gb|AF458981.1| Saccharomyces cerevisiae strain YJM627, partial genome
          Length = 32053

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15623 catgttcatcaaacttatag 15604
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>gb|AF458980.1| Saccharomyces cerevisiae strain YJM270, partial genome
          Length = 32056

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15624 catgttcatcaaacttatag 15605
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>gb|AF458979.1| Saccharomyces cerevisiae strain YJM269, partial genome
          Length = 32057

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15625 catgttcatcaaacttatag 15606
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>gb|AF458978.1| Saccharomyces cerevisiae strain YJM1129, partial genome
          Length = 32051

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15623 catgttcatcaaacttatag 15604
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>gb|AF458977.1| Saccharomyces cerevisiae strain W303, partial genome
          Length = 32055

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15624 catgttcatcaaacttatag 15605
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>gb|AF458976.1| Saccharomyces cerevisiae strain SK1, partial genome
          Length = 31986

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15623 catgttcatcaaacttatag 15604
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>gb|AF458975.1| Saccharomyces cerevisiae strain YJM789, partial genome
          Length = 32055

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 15626 catgttcatcaaacttatag 15607
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>gb|AC108686.3| Homo sapiens X BAC RP11-263A21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   agagggagcaaaagctatca 163
             ||||||||||||||||||||
Sbjct: 53267 agagggagcaaaagctatca 53248
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>gb|AC160654.3| Pan troglodytes BAC clone CH251-409B17 from chromosome unknown, complete
              sequence
          Length = 164127

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    agggagaaataaatacatct 196
              ||||||||||||||||||||
Sbjct: 125089 agggagaaataaatacatct 125108
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    tgatataagaaataaattag 272
              ||||||||||||||||||||
Sbjct: 921520 tgatataagaaataaattag 921501
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>gb|AC012356.6| Homo sapiens BAC clone RP11-308G12 from 2, complete sequence
          Length = 112527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   caacaacaaccaaaatatta 217
             ||||||||||||||||||||
Sbjct: 11658 caacaacaaccaaaatatta 11639
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>gb|AC087902.43| Mus musculus strain C57BL/6J chromosome 15 clone rp23-343o3, complete
              sequence
          Length = 220173

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 454    gaggtgaactgcggtcatgttcat 477
              ||||||||||| ||||||||||||
Sbjct: 111326 gaggtgaactggggtcatgttcat 111303
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>gb|AC131662.4| Mus musculus BAC clone RP23-257H24 from chromosome 7, complete
           sequence
          Length = 178528

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 aaaatcaacaaaacagagaa 552
           ||||||||||||||||||||
Sbjct: 370 aaaatcaacaaaacagagaa 351
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>dbj|BS000182.1| Pan troglodytes chromosome 22 clone:PTB-301D17, map 22, complete
              sequences
          Length = 163049

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    agggagaaataaatacatct 196
              ||||||||||||||||||||
Sbjct: 147485 agggagaaataaatacatct 147466
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>dbj|AB073160.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC
            clone:T11G11
          Length = 82451

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 529  tagcaaaatcaacaaaacagagaa 552
            ||||||||| ||||||||||||||
Sbjct: 5793 tagcaaaataaacaaaacagagaa 5816
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>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence
          Length = 199709

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   aaaatcaacaaaacagagaa 552
             ||||||||||||||||||||
Sbjct: 84959 aaaatcaacaaaacagagaa 84940
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>emb|AL359238.4|CNS05TEP Human chromosome 14 DNA sequence BAC R-452D21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   atataagaaataaattagct 274
             ||||||||||||||||||||
Sbjct: 67385 atataagaaataaattagct 67404
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>gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complete sequence
          Length = 178176

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   agcaaaatcaacaaaacaga 549
             ||||||||||||||||||||
Sbjct: 52723 agcaaaatcaacaaaacaga 52742
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>gb|DQ115393.1| Saccharomyces cerevisiae Pol1p (POL1) gene, partial cds; and Avt4p
             (AVT4), Ynl100wp (YNL100W), Oca1p (OCA1), Ras2p (RAS2),
             Ynl097c-bp (YNL097C-B), Pho23p (PHO23), Rps7bp (RPS7B),
             Ynl095cp (YNL095C), App1p (APP1), Ypt53p (YPT53), Ynl092wp
             (YNL092W), Nst1p (NST1), Rho2p (RHO2), Ynl089cp (YNL089C),
             Top2p (TOP2), Tcb2p (TCB2), Ynl086wp (YNL086W), Mkt1p
             (MKT1), End3p (END3), Sal1p (SAL1), Pms1p (PMS1), Sws2p
             (SWS2), Ynl080cp (YNL080C), and Tpm1p (TPM1) genes,
             complete cds
          Length = 48787

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catgttcatcaaacttatag 488
             ||||||||||||||||||||
Sbjct: 30024 catgttcatcaaacttatag 30005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,553,966
Number of Sequences: 3902068
Number of extensions: 5553966
Number of successful extensions: 109104
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108870
Number of HSP's gapped (non-prelim): 234
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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