ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
2gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 68 2e-08
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
4gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
5dbj|AK063978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
6gb|AY110224.1| Zea mays CL5837_1 mRNA sequence 56 8e-05
7emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 42 1.2

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 91      aactctacagcctacggcaaacctctcggaagcggttccagcttccagctacatctgctn 150
               |||||||||| |||||||||||||||| |||  |||||||   |||| ||||||||| | 
Sbjct: 3947781 aactctacagtctacggcaaacctctcagaacaggttccaagatccaactacatctggtt 3947722

                            
Query: 151     ataacctatattt 163
               |||||||||||||
Sbjct: 3947721 ataacctatattt 3947709



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>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                          
Query: 91     aactctacagcctacggcaaacctctcggaagcggttccagcttccagctacatctgctn 150
              |||||||||| |||||||||||||||| |||  |||||||   |||| ||||||||| | 
Sbjct: 151587 aactctacagtctacggcaaacctctcagaacaggttccaagatccaactacatctggtt 151646

                           
Query: 151    ataacctatattt 163
              |||||||||||||
Sbjct: 151647 ataacctatattt 151659



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 91      aactctacagcctacggcaaacctctcggaagcggttccagcttccagctacatctgctn 150
               |||||||||| |||||||||||||||| |||  |||||||   |||| ||||||||| | 
Sbjct: 3947892 aactctacagtctacggcaaacctctcagaacaggttccaagatccaactacatctggtt 3947833

                            
Query: 151     ataacctatattt 163
               |||||||||||||
Sbjct: 3947832 ataacctatattt 3947820



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19,
              complete sequence
          Length = 168430

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 91     aactctacagcctacggcaaacctctcggaagcggttccagcttccagctacatctgctn 150
              |||||||||| |||||||||||||||| |||  |||||||   |||| ||||||||| | 
Sbjct: 154254 aactctacagtctacggcaaacctctcagaacaggttccaagatccaactacatctggtt 154195

                           
Query: 151    ataacctatattt 163
              |||||||||||||
Sbjct: 154194 ataacctatattt 154182



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>dbj|AK063978.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C08, full
            insert sequence
          Length = 1279

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 91   aactctacagcctacggcaaacctctcggaagcggttccagcttccagctacatctgctn 150
            |||||||||| |||||||||||||||| |||  |||||||   |||| ||||||||| | 
Sbjct: 1079 aactctacagtctacggcaaacctctcagaacaggttccaagatccaactacatctggtt 1020

                         
Query: 151  ataacctatattt 163
            |||||||||||||
Sbjct: 1019 ataacctatattt 1007



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>gb|AY110224.1| Zea mays CL5837_1 mRNA sequence
          Length = 944

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tcctcgccggnaacttcagcaaagcanacaggacataccttg 341
           |||||||| | ||||||||||||||| ||||| |||||||||
Sbjct: 688 tcctcgccaggaacttcagcaaagcaaacagggcataccttg 647



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 88      tcaaactctacagcctacggc 108
               |||||||||||||||||||||
Sbjct: 2486452 tcaaactctacagcctacggc 2486472


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,630,683
Number of Sequences: 3902068
Number of extensions: 1630683
Number of successful extensions: 26821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26779
Number of HSP's gapped (non-prelim): 42
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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