ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20p11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.10
2gb|AC158775.8| Mus musculus chromosome 19, clone RP23-53N8, comp... 44 0.41
3gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswel... 44 0.41
4gb|AC009374.7| Drosophila melanogaster 3L BAC RP98-4J11 (Roswell... 44 0.41
5gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q... 44 0.41
6gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61... 44 0.41
7gb|DQ249466.1| Daphnia pulex microsatellite Dp1494 sequence 44 0.41
8gb|AC135082.4| Mus musculus BAC clone RP24-222O22 from chromosom... 42 1.6
9emb|Z70752.1|CEF25B3 Caenorhabditis elegans Cosmid F25B3, comple... 42 1.6
10emb|AL645479.19| Mouse DNA sequence from clone RP23-396O3 on chr... 42 1.6
11gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complet... 42 1.6
12gb|M69143.1|CHKAFTROP4 Gallus gallus alpha-tropomyosin gene, exo... 42 1.6
13gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 42 1.6
14ref|NM_073067.2| Caenorhabditis elegans F25B3.1 (F25B3.1) mRNA, ... 42 1.6
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16gb|AC098691.2| Homo sapiens chromosome 1 clone RP11-509K22, comp... 42 1.6
17dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18emb|X57994.1|GGTMEX456 G.gallus gene for tropomyosin (alpha isof... 42 1.6
19emb|AJ890735.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
20emb|AJ890734.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
21emb|AJ890733.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
22emb|AJ890732.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
23emb|AJ890731.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
24emb|AJ890730.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
25emb|AJ890729.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
26emb|AJ890728.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
27emb|AJ890727.1| Hirundo rustica partial tm gene for tropomyosin ... 42 1.6
28gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 1.6
29gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, comp... 42 1.6
30gb|AY722927.1| Borrelia garinii PBi variable plasmid segment G11... 40 6.3
31gb|AC007441.9| Drosophila melanogaster clone BACR10E03, complete... 40 6.3
32gb|AC122774.11| Mus musculus chromosome 15, clone RP24-189C9, co... 40 6.3
33gb|AY660951.1| Paragonimus sp. Sri Lanka type 3 cytochrome oxida... 40 6.3
34gb|AC119892.10| Mus musculus chromosome 12, clone RP24-224L20, c... 40 6.3
35gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosom... 40 6.3
36ref|NM_198187.2| Homo sapiens astrotactin 2 (ASTN2), transcript ... 40 6.3
37ref|NM_198186.2| Homo sapiens astrotactin 2 (ASTN2), transcript ... 40 6.3
38ref|NM_014010.3| Homo sapiens astrotactin 2 (ASTN2), transcript ... 40 6.3
39gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, com... 40 6.3
40ref|XM_386215.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 6.3
41gb|AC112943.12| Mus musculus chromosome 16, clone RP23-424C7, co... 40 6.3
42gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, co... 40 6.3
43gb|BC058278.1| Mus musculus EGL nine homolog 3 (C. elegans), mRN... 40 6.3
44gb|BC018759.2| Homo sapiens astrotactin 2, mRNA (cDNA clone IMAG... 40 6.3
45gb|BC029272.1| Homo sapiens astrotactin 2, mRNA (cDNA clone IMAG... 40 6.3
46gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete ... 40 6.3
47emb|Z95624.1|HSU237H1 Human DNA sequence from clone LL0XNC01-237... 40 6.3
48emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chro... 40 6.3
49emb|AL359987.13| Human DNA sequence from clone RP11-596A13 on ch... 40 6.3
50emb|AL137024.27| Human DNA sequence from clone RP11-45A16 on chr... 40 6.3
51emb|AL031781.1|HS51J12 Human DNA sequence from clone RP1-51J12 o... 40 6.3
52gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Canc... 40 6.3
53emb|BX005227.12| Zebrafish DNA sequence from clone CH211-286C23 ... 40 6.3
54dbj|AK127350.1| Homo sapiens cDNA FLJ45423 fis, clone BRHIP30369... 40 6.3
55gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complet... 40 6.3
56gb|AC110799.3| Homo sapiens BAC clone RP11-663P9 from 4, complet... 40 6.3
57dbj|AK011502.1| Mus musculus 10 days embryo whole body cDNA, RIK... 40 6.3
58emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chr... 40 6.3
59dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
60gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswel... 40 6.3
61gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, comple... 40 6.3
62dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
63gb|AC096655.1| Homo sapiens BAC clone RP11-20B14 from 2, complet... 40 6.3
64gb|AC013464.6| Homo sapiens BAC clone RP11-337D5 from UL, comple... 40 6.3
65emb|BX649176.1|HSM809328 Homo sapiens mRNA; cDNA DKFZp686P1898 (... 40 6.3
66gb|AF116574.1|AF116574 Homo sapiens astrotactin2 (ASTN2) mRNA, c... 40 6.3
67gb|AC154679.2| Mus musculus BAC clone RP24-304O7 from 17, comple... 40 6.3
68emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 ... 40 6.3
69emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 40 6.3
70gb|AE003702.3| Drosophila melanogaster chromosome 3R, section 40... 40 6.3
71dbj|AP000789.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3
72gb|AF035177.1|AF035177 Oncorhynchus tshawytsha GTP-binding prote... 40 6.3
73ref|NM_028133.1| Mus musculus EGL nine homolog 3 (C. elegans) (E... 40 6.3
74gb|AC137515.3| Mus musculus BAC clone RP23-258C20 from 1, comple... 40 6.3
75gb|AC174056.1| Homo sapiens chromosome 5 clone WI2-2021I3, compl... 40 6.3
76gb|AC170807.2| Mus musculus BAC clone RP23-374I2 from chromosome... 40 6.3
77gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosom... 40 6.3
78emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on ch... 40 6.3
79emb|AJ310548.1|MMU310548 Mus musculus mRNA for EGLN3 protein 40 6.3
80emb|AL844537.5| Mouse DNA sequence from clone RP23-448A16 on chr... 40 6.3
81dbj|AB014534.1| Homo sapiens mRNA for KIAA0634 protein, partial cds 40 6.3
82emb|AL645793.14| Mouse DNA sequence from clone RP23-480H2 on chr... 40 6.3
83dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3 
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
          Length = 82503

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 412   ttttctataaaaacatattttta 434
             |||||||||||||||||||||||
Sbjct: 82448 ttttctataaaaacatattttta 82426
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>gb|AC158775.8| Mus musculus chromosome 19, clone RP23-53N8, complete sequence
          Length = 177315

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 356   ctcttcatttttctctatcttt 377
             ||||||||||||||||||||||
Sbjct: 84660 ctcttcatttttctctatcttt 84639
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>gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 166352

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 434  atctttgttgccgttgttgttt 455
            ||||||||||||||||||||||
Sbjct: 9002 atctttgttgccgttgttgttt 9023
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>gb|AC009374.7| Drosophila melanogaster 3L BAC RP98-4J11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164719

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 434    atctttgttgccgttgttgttt 455
              ||||||||||||||||||||||
Sbjct: 151754 atctttgttgccgttgttgttt 151775
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>gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q21, complete sequence
          Length = 226916

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 408    aaggttttctataaaaacatatttttatct 437
              ||||||||||||||||||| ||||| ||||
Sbjct: 152220 aaggttttctataaaaacacattttaatct 152191
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>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete
              sequence
          Length = 425677

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 434    atctttgttgccgttgttgttt 455
              ||||||||||||||||||||||
Sbjct: 117429 atctttgttgccgttgttgttt 117408
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>gb|DQ249466.1| Daphnia pulex microsatellite Dp1494 sequence
          Length = 330

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 437 tttgttgccgttgttgtttttc 458
           ||||||||||||||||||||||
Sbjct: 253 tttgttgccgttgttgtttttc 232
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>gb|AC135082.4| Mus musculus BAC clone RP24-222O22 from chromosome 7, complete sequence
          Length = 183170

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 414   ttctataaaaacatatttttatctt 438
             ||||||||||||| |||||||||||
Sbjct: 79289 ttctataaaaacacatttttatctt 79313
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>emb|Z70752.1|CEF25B3 Caenorhabditis elegans Cosmid F25B3, complete sequence
          Length = 30182

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 362  atttttctctatcttttcatc 382
            |||||||||||||||||||||
Sbjct: 5029 atttttctctatcttttcatc 5049
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>emb|AL645479.19| Mouse DNA sequence from clone RP23-396O3 on chromosome 11 Contains the
             Cpd gene for carboxypeptidase D and a CpG island, complete
             sequence
          Length = 102358

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   ccctccgagatagaaggtttt 415
             |||||||||||||||||||||
Sbjct: 77638 ccctccgagatagaaggtttt 77658
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>gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complete sequence
          Length = 145706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    agacaccaactgaggaaatacaaga 98
             ||||||||||||| |||||||||||
Sbjct: 36716 agacaccaactgatgaaatacaaga 36740
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>gb|M69143.1|CHKAFTROP4 Gallus gallus alpha-tropomyosin gene, exons 4, 5, 6a, 6b, 7, 8, and
            9a
          Length = 3928

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 359  ttcatttttctctatcttttc 379
            |||||||||||||||||||||
Sbjct: 1059 ttcatttttctctatcttttc 1079
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>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete
             sequence
          Length = 108394

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 422   aaacatatttttatctttgtt 442
             |||||||||||||||||||||
Sbjct: 50473 aaacatatttttatctttgtt 50493
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>ref|NM_073067.2| Caenorhabditis elegans F25B3.1 (F25B3.1) mRNA, complete cds
          Length = 2990

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 362  atttttctctatcttttcatc 382
            |||||||||||||||||||||
Sbjct: 2878 atttttctctatcttttcatc 2898
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 235      tcttcatgatcaatatgatggcaca 259
                ||||||||||||||||||| |||||
Sbjct: 21205777 tcttcatgatcaatatgatagcaca 21205801
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>gb|AC098691.2| Homo sapiens chromosome 1 clone RP11-509K22, complete sequence
          Length = 166885

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 355   cctcttcatttttctctatct 375
             |||||||||||||||||||||
Sbjct: 67796 cctcttcatttttctctatct 67816
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 235   tcttcatgatcaatatgatggcaca 259
             ||||||||||||||||||| |||||
Sbjct: 76534 tcttcatgatcaatatgatagcaca 76558
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>emb|X57994.1|GGTMEX456 G.gallus gene for tropomyosin (alpha isoform), Exons 4, 5, 6a, 6b, 7,
            8, and 9a
          Length = 3927

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 359  ttcatttttctctatcttttc 379
            |||||||||||||||||||||
Sbjct: 1059 ttcatttttctctatcttttc 1079
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>emb|AJ890735.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 9
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890734.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 8
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890733.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 7
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890732.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 6
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890731.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 5
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890730.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 4
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890729.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 3
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890728.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 2
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>emb|AJ890727.1| Hirundo rustica partial tm gene for tropomyosin (alpha isoform),
           intron 5, isolate 1
          Length = 406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 ttcatttttctctatcttttc 379
           |||||||||||||||||||||
Sbjct: 343 ttcatttttctctatcttttc 363
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 353     aacctcttcatttttctctat 373
               |||||||||||||||||||||
Sbjct: 1604880 aacctcttcatttttctctat 1604860
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>gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, complete sequence
          Length = 161969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 361   catttttctctatcttttcat 381
             |||||||||||||||||||||
Sbjct: 93148 catttttctctatcttttcat 93168
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>gb|AY722927.1| Borrelia garinii PBi variable plasmid segment G11a16d07.r1, WORKING
            DRAFT SEQUENCE
          Length = 6835

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 412  ttttctataaaaacatatttttat 435
            ||||||||||||| ||||||||||
Sbjct: 5567 ttttctataaaaatatatttttat 5544
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>gb|AC007441.9| Drosophila melanogaster clone BACR10E03, complete sequence
          Length = 195212

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   ttgttgccgttgttgttttt 457
             ||||||||||||||||||||
Sbjct: 56365 ttgttgccgttgttgttttt 56346
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>gb|AC122774.11| Mus musculus chromosome 15, clone RP24-189C9, complete sequence
          Length = 154384

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  aaacatatttttatctttgt 441
            ||||||||||||||||||||
Sbjct: 6349 aaacatatttttatctttgt 6330
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>gb|AY660951.1| Paragonimus sp. Sri Lanka type 3 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial
          Length = 383

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  acgtgtcatgcaacaagcta 49
           ||||||||||||||||||||
Sbjct: 375 acgtgtcatgcaacaagcta 356
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>gb|AC119892.10| Mus musculus chromosome 12, clone RP24-224L20, complete sequence
          Length = 153665

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   caaaataaataaggacatga 166
             ||||||||||||||||||||
Sbjct: 12085 caaaataaataaggacatga 12104
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>gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosome 10, complete
             sequence
          Length = 195132

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 431   tttatctttgttgccgttgttgtt 454
             ||||| ||||||||||||||||||
Sbjct: 67339 tttatttttgttgccgttgttgtt 67362
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>ref|NM_198187.2| Homo sapiens astrotactin 2 (ASTN2), transcript variant 3, mRNA
          Length = 4768

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 4314 ttcatttttctctatctttt 4333
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>ref|NM_198186.2| Homo sapiens astrotactin 2 (ASTN2), transcript variant 2, mRNA
          Length = 4756

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 4302 ttcatttttctctatctttt 4321
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>ref|NM_014010.3| Homo sapiens astrotactin 2 (ASTN2), transcript variant 1, mRNA
          Length = 4606

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 4161 ttcatttttctctatctttt 4180
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>gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, complete sequence
          Length = 262581

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    ttgaaaacctcttcattttt 367
              ||||||||||||||||||||
Sbjct: 121148 ttgaaaacctcttcattttt 121129
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>ref|XM_386215.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06039.1)
           partial mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 ttgatgtcggtgatgttgac 328
           ||||||||||||||||||||
Sbjct: 476 ttgatgtcggtgatgttgac 495
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>gb|AC112943.12| Mus musculus chromosome 16, clone RP23-424C7, complete sequence
          Length = 219990

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ttttctataaaaacatattt 431
              ||||||||||||||||||||
Sbjct: 107282 ttttctataaaaacatattt 107263
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>gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, complete sequence
          Length = 261721

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    caaaataaataaggacatga 166
              ||||||||||||||||||||
Sbjct: 222246 caaaataaataaggacatga 222265
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>gb|BC058278.1| Mus musculus EGL nine homolog 3 (C. elegans), mRNA (cDNA clone
            MGC:65566 IMAGE:6528802), complete cds
          Length = 2441

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  caaaataaataaggacatga 166
            ||||||||||||||||||||
Sbjct: 2250 caaaataaataaggacatga 2231
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>gb|BC018759.2| Homo sapiens astrotactin 2, mRNA (cDNA clone IMAGE:4128621), partial
            cds
          Length = 2677

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 2610 ttcatttttctctatctttt 2629
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>gb|BC029272.1| Homo sapiens astrotactin 2, mRNA (cDNA clone IMAGE:5140676), complete
            cds
          Length = 2371

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 1926 ttcatttttctctatctttt 1945
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>gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete sequence
          Length = 113361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  aaaaacatatttttatcttt 439
            ||||||||||||||||||||
Sbjct: 6968 aaaaacatatttttatcttt 6949
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>emb|Z95624.1|HSU237H1 Human DNA sequence from clone LL0XNC01-237H1 on chromosome X Contains a
             novel gene, a novel protein similar to RAB40A member of
             RAS oncogene family (RAB40A) and the 3' end of a novel
             gene, complete sequence
          Length = 37322

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gagatagaaggttttctata 420
             ||||||||||||||||||||
Sbjct: 14488 gagatagaaggttttctata 14507
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>emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chromosome 13 Contains the
             3' end of the PCDH17 gene for protocadherin 17 (PCH68
             PCDH68), complete sequence
          Length = 99292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 412   ttttctataaaaacatatttttatcttt 439
             |||||| |||||||| ||||||||||||
Sbjct: 77036 ttttctttaaaaacacatttttatcttt 77063
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>emb|AL359987.13| Human DNA sequence from clone RP11-596A13 on chromosome 6, complete
             sequence
          Length = 189370

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   atttttctctatcttttcat 381
             ||||||||||||||||||||
Sbjct: 49260 atttttctctatcttttcat 49241
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>emb|AL137024.27| Human DNA sequence from clone RP11-45A16 on chromosome 9q32-33.3 Contains
              the 3' end of the PAPPA gene for pregnancy-associated
              plasma protein A, a novel gene and the 3'end of the ASTN2
              gene for astrotactin 2, complete sequence
          Length = 159430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    ttcatttttctctatctttt 378
              ||||||||||||||||||||
Sbjct: 148430 ttcatttttctctatctttt 148411
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>emb|AL031781.1|HS51J12 Human DNA sequence from clone RP1-51J12 on chromosome 6q26-27 Contains
             the 3' part of the alternatively spliced gene for the
             human orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA
             Binding proteins) and zebrafish ZKQ-1 (Quaking protein
             homolog), complete sequence
          Length = 117813

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   ataaaaacatatttttatctttgt 441
             ||||| ||||||||||||||||||
Sbjct: 38924 ataaatacatatttttatctttgt 38901
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>gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agccggaaagaccaaaataa 154
             ||||||||||||||||||||
Sbjct: 63134 agccggaaagaccaaaataa 63115
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>emb|BX005227.12| Zebrafish DNA sequence from clone CH211-286C23 in linkage group 21,
              complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 427    tatttttatctttgttgccgttgttgtt 454
              |||||||||||||||||  |||||||||
Sbjct: 151538 tatttttatctttgttgtagttgttgtt 151511
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>dbj|AK127350.1| Homo sapiens cDNA FLJ45423 fis, clone BRHIP3036936, highly  similar
            to Mus musculus astrotactin 2 (Astn2)
          Length = 3812

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 3382 ttcatttttctctatctttt 3401
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>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ttgaaaacctcttcattttt 367
             ||||||||||||||||||||
Sbjct: 23133 ttgaaaacctcttcattttt 23114
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>gb|AC110799.3| Homo sapiens BAC clone RP11-663P9 from 4, complete sequence
          Length = 125785

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 438    ttgttgccgttgttgtttttccggcaat 465
              ||||||| |||||||||||||| |||||
Sbjct: 106227 ttgttgctgttgttgtttttcctgcaat 106200
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>dbj|AK011502.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:2610021G09 product:EGL nine
            homolog 3 (C. elegans), full insert sequence
          Length = 1979

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  caaaataaataaggacatga 166
            ||||||||||||||||||||
Sbjct: 1814 caaaataaataaggacatga 1795
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>emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chromosome X, complete
              sequence
          Length = 120359

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    taaaaacatatttttatctt 438
              ||||||||||||||||||||
Sbjct: 111150 taaaaacatatttttatctt 111131
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 435      tctttgttgccgttgttgtt 454
                ||||||||||||||||||||
Sbjct: 31980048 tctttgttgccgttgttgtt 31980067
to top
>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 183562

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   atttttctctatcttttcat 381
             ||||||||||||||||||||
Sbjct: 15931 atttttctctatcttttcat 15950
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>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence
          Length = 187848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    atttttctctatcttttcat 381
              ||||||||||||||||||||
Sbjct: 108059 atttttctctatcttttcat 108078
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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tctttgttgccgttgttgtt 454
             ||||||||||||||||||||
Sbjct: 21862 tctttgttgccgttgttgtt 21881
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>gb|AC096655.1| Homo sapiens BAC clone RP11-20B14 from 2, complete sequence
          Length = 84591

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tttttctctatcttttcatc 382
             ||||||||||||||||||||
Sbjct: 11559 tttttctctatcttttcatc 11540
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>gb|AC013464.6| Homo sapiens BAC clone RP11-337D5 from UL, complete sequence
          Length = 195161

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tttttctctatcttttcatc 382
              ||||||||||||||||||||
Sbjct: 137138 tttttctctatcttttcatc 137157
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>emb|BX649176.1|HSM809328 Homo sapiens mRNA; cDNA DKFZp686P1898 (from clone DKFZp686P1898)
          Length = 3950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 3496 ttcatttttctctatctttt 3515
to top
>gb|AF116574.1|AF116574 Homo sapiens astrotactin2 (ASTN2) mRNA, complete cds
          Length = 3837

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 3382 ttcatttttctctatctttt 3401
to top
>gb|AC154679.2| Mus musculus BAC clone RP24-304O7 from 17, complete sequence
          Length = 164590

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   atatttttatctttgttgcc 445
             ||||||||||||||||||||
Sbjct: 73000 atatttttatctttgttgcc 72981
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>emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 in linkage group 19,
             complete sequence
          Length = 163300

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   tcatttttctctatcttttc 379
             ||||||||||||||||||||
Sbjct: 64887 tcatttttctctatcttttc 64906
to top
>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
              complete sequence
          Length = 201771

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    acatatttttatctttgttg 443
              ||||||||||||||||||||
Sbjct: 150126 acatatttttatctttgttg 150107
to top
>gb|AE003702.3| Drosophila melanogaster chromosome 3R, section 40 of 118 of the complete
              sequence
          Length = 227413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    ttgttgccgttgttgttttt 457
              ||||||||||||||||||||
Sbjct: 218622 ttgttgccgttgttgttttt 218603
to top
>dbj|AP000789.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-725K16, complete
             sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   atatttttatctttgttgcc 445
             ||||||||||||||||||||
Sbjct: 60337 atatttttatctttgttgcc 60318
to top
>gb|AF035177.1|AF035177 Oncorhynchus tshawytsha GTP-binding protein mRNA, complete cds
          Length = 1493

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 424  acatatttttatctttgttg 443
            ||||||||||||||||||||
Sbjct: 1408 acatatttttatctttgttg 1427
to top
>ref|NM_028133.1| Mus musculus EGL nine homolog 3 (C. elegans) (Egln3), mRNA
          Length = 2656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  caaaataaataaggacatga 166
            ||||||||||||||||||||
Sbjct: 2491 caaaataaataaggacatga 2472
to top
>gb|AC137515.3| Mus musculus BAC clone RP23-258C20 from 1, complete sequence
          Length = 215582

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   ttgaaaacctcttcattttt 367
             ||||||||||||||||||||
Sbjct: 12905 ttgaaaacctcttcattttt 12924
to top
>gb|AC174056.1| Homo sapiens chromosome 5 clone WI2-2021I3, complete sequence
          Length = 37265

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  ctcttcatttttctctatct 375
            ||||||||||||||||||||
Sbjct: 4348 ctcttcatttttctctatct 4367
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>gb|AC170807.2| Mus musculus BAC clone RP23-374I2 from chromosome 17, complete sequence
          Length = 208318

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   tttgttgccgttgttgtttt 456
             ||||||||||||||||||||
Sbjct: 49216 tttgttgccgttgttgtttt 49235
to top
>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete sequence
          Length = 180189

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    tttgttgccgttgttgtttt 456
              ||||||||||||||||||||
Sbjct: 179751 tttgttgccgttgttgtttt 179770
to top
>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete
              sequence
          Length = 228428

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 429    tttttatctttgttgccgttgttgtttt 456
              ||||||| |||||||| |||||||||||
Sbjct: 152604 tttttatttttgttgctgttgttgtttt 152631
to top
>emb|AJ310548.1|MMU310548 Mus musculus mRNA for EGLN3 protein
          Length = 2656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  caaaataaataaggacatga 166
            ||||||||||||||||||||
Sbjct: 2491 caaaataaataaggacatga 2472
to top
>emb|AL844537.5| Mouse DNA sequence from clone RP23-448A16 on chromosome 2, complete
              sequence
          Length = 185541

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 429    tttttatctttgttgccgttgttgtttt 456
              ||||||| |||||||| |||||||||||
Sbjct: 106718 tttttatttttgttgctgttgttgtttt 106745
to top
>dbj|AB014534.1| Homo sapiens mRNA for KIAA0634 protein, partial cds
          Length = 4591

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  ttcatttttctctatctttt 378
            ||||||||||||||||||||
Sbjct: 4161 ttcatttttctctatctttt 4180
to top
>emb|AL645793.14| Mouse DNA sequence from clone RP23-480H2 on chromosome 1, complete
             sequence
          Length = 93900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     acaactatgtttgcttacaa 28
             ||||||||||||||||||||
Sbjct: 51781 acaactatgtttgcttacaa 51762
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tctttgttgccgttgttgtt 454
             ||||||||||||||||||||
Sbjct: 76775 tctttgttgccgttgttgtt 76794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,787,864
Number of Sequences: 3902068
Number of extensions: 5787864
Number of successful extensions: 123686
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123408
Number of HSP's gapped (non-prelim): 278
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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