ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NMT1_ARATH (Q9LTR9) Glycylpeptide N-tetradecanoyltransferase 1 (... 32 2.0
2TOLB_ERWCT (Q6D7F2) Protein tolB precursor 30 4.6
3IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3... 30 6.0
4CADC_ECOLI (P23890) Transcriptional activator cadC 30 6.0
5IBP5_XENLA (Q90WV8) Insulin-like growth factor-binding protein 5... 30 7.8

>NMT1_ARATH (Q9LTR9) Glycylpeptide N-tetradecanoyltransferase 1 (EC 2.3.1.97)|
           (Peptide N-myristoyltransferase 1)
           (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1)
           (Type I N-myristoyltransferase 1)
          Length = 434

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -2

Query: 278 SDFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNFCLVTNFLVYYCIPNPRRSEPL 99
           +DF+ N +    WLLP    +DS+L++         P    VT+F  +Y +P+     P 
Sbjct: 300 TDFDENDVE--HWLLPREDVVDSYLVES--------PETHDVTDFCSFYTLPSTILGNPN 349

Query: 98  QTTLHA 81
            TTL A
Sbjct: 350 YTTLKA 355



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>TOLB_ERWCT (Q6D7F2) Protein tolB precursor|
          Length = 430

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 137 TPKNWSLDRSLA*KNTQARHLSRGSYLYPLRMVTTTGHPRSGLLQNQTKI 286
           TP  W+     A    Q +  + GSYL   ++V T+G+P + L QNQ K+
Sbjct: 87  TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNPGNVLAQNQFKV 136



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>IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 291

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -2

Query: 131 CIPNPRRSEPLQTTLHARGLCCT------IKPELFPVFSVNSRDS 15
           C P P    PLQ  L  RGLC        ++P L P  S N  +S
Sbjct: 96  CQPPPGDPRPLQALLDGRGLCANASAVGRLRPYLLPSASGNGSES 140



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>CADC_ECOLI (P23890) Transcriptional activator cadC|
          Length = 512

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 631 SSAPVVSRIMQNQKGSCFWIWFLFLTSLGL 542
           ++ P     +++++ + FW+WF FL SLG+
Sbjct: 142 TATPPEQSPVKSKRFTTFWVWFFFLLSLGI 171



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>IBP5_XENLA (Q90WV8) Insulin-like growth factor-binding protein 5 precursor|
           (IGFBP-5) (IBP-5) (IGF-binding protein 5) (xIGFBP-5)
          Length = 265

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 131 CIPNPRRSEPLQTTLHARGLCCTIK 57
           C+P     +PL   LH RG+C  +K
Sbjct: 81  CLPEQGEEKPLHALLHGRGVCLNLK 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,053,993
Number of Sequences: 219361
Number of extensions: 2125950
Number of successful extensions: 4380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4380
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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