ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
2dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
3dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
4dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
5dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
6gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence 216 6e-53
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
8dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
9ref|XM_467454.1| Oryza sativa (japonica cultivar-group), mRNA 74 6e-10
10dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, comple... 44 0.51
14emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 42 2.0
15gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence 40 7.9
16gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, com... 40 7.9
17gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474... 40 7.9
18gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, co... 40 7.9
19emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, com... 40 7.9
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.9
21gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence 40 7.9
22emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 7.9
23gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 7.9
24emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL interge... 40 7.9
25emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic ... 40 7.9
26emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic ... 40 7.9
27gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 40 7.9
28gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete... 40 7.9
29ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA 40 7.9
30emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in... 40 7.9
31gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Canc... 40 7.9
32emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... 40 7.9 
>dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O14, full
            insert sequence
          Length = 2267

 Score =  289 bits (146), Expect = 5e-75
 Identities = 182/194 (93%)
 Strand = Plus / Minus

                                                                        
Query: 390  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1880 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1821

                                                                        
Query: 450  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 509
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1820 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1761

                                                                        
Query: 510  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 569
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1760 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1701

                          
Query: 570  tgaacatgtacctc 583
            ||||||||||||||
Sbjct: 1700 tgaacatgtacctc 1687



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 110  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2174 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2135
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>dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full
            insert sequence
          Length = 2308

 Score =  289 bits (146), Expect = 5e-75
 Identities = 182/194 (93%)
 Strand = Plus / Minus

                                                                        
Query: 390  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1823 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1764

                                                                        
Query: 450  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 509
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1763 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1704

                                                                        
Query: 510  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 569
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1703 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1644

                          
Query: 570  tgaacatgtacctc 583
            ||||||||||||||
Sbjct: 1643 tgaacatgtacctc 1630



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 110  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2117 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2078
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>dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020C22, full
            insert sequence
          Length = 2286

 Score =  289 bits (146), Expect = 5e-75
 Identities = 182/194 (93%)
 Strand = Plus / Minus

                                                                        
Query: 390  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1839 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1780

                                                                        
Query: 450  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 509
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1779 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1720

                                                                        
Query: 510  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 569
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1719 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1660

                          
Query: 570  tgaacatgtacctc 583
            ||||||||||||||
Sbjct: 1659 tgaacatgtacctc 1646



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 110  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2133 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2094
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>dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P16, full
           insert sequence
          Length = 1255

 Score =  289 bits (146), Expect = 5e-75
 Identities = 182/194 (93%)
 Strand = Plus / Minus

                                                                       
Query: 390 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 802 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 743

                                                                       
Query: 450 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 509
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 742 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 683

                                                                       
Query: 510 caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 569
           |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 682 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 623

                         
Query: 570 tgaacatgtacctc 583
           ||||||||||||||
Sbjct: 622 tgaacatgtacctc 609



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 110  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 1096 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 1057
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>dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B09, full
           insert sequence
          Length = 1331

 Score =  289 bits (146), Expect = 5e-75
 Identities = 182/194 (93%)
 Strand = Plus / Minus

                                                                       
Query: 390 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 999 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 940

                                                                       
Query: 450 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 509
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 939 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 880

                                                                       
Query: 510 caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 569
           |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 879 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 820

                         
Query: 570 tgaacatgtacctc 583
           ||||||||||||||
Sbjct: 819 tgaacatgtacctc 806
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>gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence
          Length = 1263

 Score =  216 bits (109), Expect = 6e-53
 Identities = 175/197 (88%)
 Strand = Plus / Minus

                                                                       
Query: 388 attttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctg 447
           ||||||| || |||||||||||||| |||||||  ||||||||||| ||||||||||| |
Sbjct: 805 attttgattgttcaaatggtgcacgcacaaatagctgcccatggagggtgacaactgcgg 746

                                                                       
Query: 448 aggtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacac 507
           ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 745 aggtttggtgagggtcaatgcgggaaggcaaactaatgaccttcttgaatggagtgacac 686

                                                                       
Query: 508 cccaaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctg 567
           |||| || ||||| | ||| ||||||||||| ||||||||||| || ||||| || || |
Sbjct: 685 cccatgggttatccaattgctcaggctctccagtaactatcaaacgaccagctgggtcgg 626

                            
Query: 568 actgaacatgtacctct 584
           |||||||||||||||||
Sbjct: 625 actgaacatgtacctct 609
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 8e-37
 Identities = 94/98 (95%)
 Strand = Plus / Minus

                                                                            
Query: 485      gaccttcttgaatggagtaacaccccaaggattatctagttgttcaggctctcctgtaac 544
                ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 24635121 gaccttcttgaatggagtaacaccccaaggattgtctagttgctcaggctctccagtaac 24635062

                                                      
Query: 545      tatcaagcggccagcaggatctgactgaacatgtacct 582
                |||||| |||||||||||||||||||||||||||||||
Sbjct: 24635061 tatcaaacggccagcaggatctgactgaacatgtacct 24635024



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                            
Query: 390      tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
                ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 24635304 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 24635245

                                                        
Query: 450      gtttgatgaggatcaatgcgggagggcaaactaatgacct 489
                ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24635244 gtttgatgaggatcaatgcgggagggcaaactaataacct 24635205



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 110      aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
                ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 24635965 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 24635926
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score =  163 bits (82), Expect = 8e-37
 Identities = 94/98 (95%)
 Strand = Plus / Minus

                                                                          
Query: 485    gaccttcttgaatggagtaacaccccaaggattatctagttgttcaggctctcctgtaac 544
              ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 118314 gaccttcttgaatggagtaacaccccaaggattgtctagttgctcaggctctccagtaac 118255

                                                    
Query: 545    tatcaagcggccagcaggatctgactgaacatgtacct 582
              |||||| |||||||||||||||||||||||||||||||
Sbjct: 118254 tatcaaacggccagcaggatctgactgaacatgtacct 118217



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                          
Query: 390    tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 449
              ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 118497 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 118438

                                                      
Query: 450    gtttgatgaggatcaatgcgggagggcaaactaatgacct 489
              ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118437 gtttgatgaggatcaatgcgggagggcaaactaataacct 118398



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                      
Query: 110    aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 148
              ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 119158 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 119119
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>ref|XM_467454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2072

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 400  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 459
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 460  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 519
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 520  c 520
            |
Sbjct: 1445 c 1445



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 555  ccagcaggatctgactgaacatgtacctct 584
            ||||||||||||||||||||||| ||||||
Sbjct: 1410 ccagcaggatctgactgaacatgcacctct 1381
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>dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B09, full
            insert sequence
          Length = 2072

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 400  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 459
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 460  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 519
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 520  c 520
            |
Sbjct: 1445 c 1445



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 555  ccagcaggatctgactgaacatgtacctct 584
            ||||||||||||||||||||||| ||||||
Sbjct: 1410 ccagcaggatctgactgaacatgcacctct 1381
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 400      caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 459
                ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 29630241 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 29630300

                    
Query: 460      gatc 463
                ||||
Sbjct: 29630301 gatc 29630304



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 555      ccagcaggatctgactgaacatgtacct 582
                ||||||||||||||||||||||| ||||
Sbjct: 29630475 ccagcaggatctgactgaacatgcacct 29630502



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 486      accttcttgaatggagtaacaccccaaggattatc 520
                ||||||||||||||||| |  ||||||||||||||
Sbjct: 29630406 accttcttgaatggagtgatcccccaaggattatc 29630440
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>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 400   caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 459
             ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 87962 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 88021

                 
Query: 460   gatc 463
             ||||
Sbjct: 88022 gatc 88025



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 555   ccagcaggatctgactgaacatgtacct 582
             ||||||||||||||||||||||| ||||
Sbjct: 88196 ccagcaggatctgactgaacatgcacct 88223



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 486   accttcttgaatggagtaacaccccaaggattatc 520
             ||||||||||||||||| |  ||||||||||||||
Sbjct: 88127 accttcttgaatggagtgatcccccaaggattatc 88161
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>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 367    tttgtcaagtagagtgtcatgatttt 392
              ||||||||||||| ||||||||||||
Sbjct: 111711 tttgtcaagtagactgtcatgatttt 111736
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>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 442    ctgctgaggtttgatgaggatcaat 466
              |||||||||||||||| ||||||||
Sbjct: 112206 ctgctgaggtttgatgcggatcaat 112182
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>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence
          Length = 1830

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 486  accttcttgaatggagt-aacaccccaaggattatc 520
            ||||||||||||||||| | | ||||||||||||||
Sbjct: 1637 accttcttgaatggagtgatccccccaaggattatc 1602
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>gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, complete sequence
          Length = 184672

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tattaggaataaagctacaa 75
             ||||||||||||||||||||
Sbjct: 57450 tattaggaataaagctacaa 57431
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>gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474 IMAGE:7044589),
            complete cds
          Length = 2575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 221  aattagttagaattaatcaataca 244
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence
          Length = 184265

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 115   ggaacaaataaaccatgaacatttgagcatca 146
             ||||||||||||||| | ||| ||||||||||
Sbjct: 45048 ggaacaaataaaccaaggacaattgagcatca 45079
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>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence
          Length = 270722

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    atgaacatttgagcatcagg 148
              ||||||||||||||||||||
Sbjct: 142128 atgaacatttgagcatcagg 142109
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 122     ataaaccatgaacatttgagcatc 145
               |||||||| |||||||||||||||
Sbjct: 2150103 ataaaccaagaacatttgagcatc 2150080
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>gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence
          Length = 163056

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ttagaattaatcaatacaca 246
              ||||||||||||||||||||
Sbjct: 141207 ttagaattaatcaatacaca 141188
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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
             complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    acactacaaatcatcatcct 94
             ||||||||||||||||||||
Sbjct: 33694 acactacaaatcatcatcct 33713
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>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    aaaggaacaaataaaccatg 131
              ||||||||||||||||||||
Sbjct: 146130 aaaggaacaaataaaccatg 146111
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>emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL intergenic spacer, trnL
           gene, and trnL-trnF intergenic spacer, specimen voucher
           Bremer  4319 (UPS)
          Length = 1758

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tctaattagttagaattaat 237
           ||||||||||||||||||||
Sbjct: 486 tctaattagttagaattaat 467
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>emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher
           Hilliard & Burtt 18503 (S)
          Length = 1736

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tctaattagttagaattaat 237
           ||||||||||||||||||||
Sbjct: 465 tctaattagttagaattaat 446
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>emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher Bremer
           3816 (UPS)
          Length = 1700

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tctaattagttagaattaat 237
           ||||||||||||||||||||
Sbjct: 428 tctaattagttagaattaat 409
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>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aatcatcatcctttgatggt 102
              ||||||||||||||||||||
Sbjct: 158746 aatcatcatcctttgatggt 158765
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>gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete sequence
          Length = 135586

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tcccaccagcaaggcaacat 354
             ||||||||||||||||||||
Sbjct: 22798 tcccaccagcaaggcaacat 22779
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>ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA
          Length = 2575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 221  aattagttagaattaatcaataca 244
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in linkage group 10,
            complete sequence
          Length = 122664

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  ttagaattaatcaatacaca 246
            ||||||||||||||||||||
Sbjct: 8591 ttagaattaatcaatacaca 8610
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>gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199525

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   gttaaaccgaaaaaggaacaaata 124
             |||||||| |||||||||||||||
Sbjct: 77016 gttaaacctaaaaaggaacaaata 76993
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>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete
             sequence
          Length = 201246

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   catctaattagttagaattaatca 239
             |||||||||| |||||||||||||
Sbjct: 27751 catctaattaattagaattaatca 27728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,756,702
Number of Sequences: 3902068
Number of extensions: 4756702
Number of successful extensions: 87913
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87758
Number of HSP's gapped (non-prelim): 155
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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