ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBX2_SCHPO (O14048) UBX domain-containing protein 2 36 0.037
2PTK7_HUMAN (Q13308) Tyrosine-protein kinase-like 7 precursor (Co... 34 0.14
3CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoo... 30 2.0
4TA2R9_PANTR (Q646C6) Taste receptor type 2 member 9 (T2R9) 29 4.5
5TA2R9_HUMAN (Q9NYW1) Taste receptor type 2 member 9 (T2R9) (Tast... 29 4.5
6OXA1L_HUMAN (Q15070) Inner membrane protein OXA1L, mitochondrial... 29 5.9
7STAG3_HUMAN (Q9UJ98) Cohesin subunit SA-3 (Stromal antigen 3) (S... 29 5.9
8NPB_BOVIN (Q8MJV4) Neuropeptide B precursor (Preproprotein L7) (... 29 5.9
9TA2R9_PONPY (Q645V9) Taste receptor type 2 member 9 (T2R9) 28 7.7
10INCC1_ECOLI (Q52312) Protein incC 28 7.7
11SLU7_MAGGR (Q51LA6) Pre-mRNA-splicing factor SLU7 28 7.7

>UBX2_SCHPO (O14048) UBX domain-containing protein 2|
          Length = 427

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 437 RVAVRLPGGRRIQRNFLHTDPIKLLWSLCSSEVEDGEKRAFHFGQPIPGAAINKLQYESE 258
           R+ +R+P G R  R F  TDP+  +++      E  +K+ F             L    +
Sbjct: 355 RIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSL-----TFQRKSLWTSLD 409

Query: 257 QTFKEAGLANSMI 219
            T KEAG+ N+ +
Sbjct: 410 STIKEAGIQNTAL 422



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>PTK7_HUMAN (Q13308) Tyrosine-protein kinase-like 7 precursor (Colon carcinoma|
           kinase 4) (CCK-4)
          Length = 1070

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
 Frame = -1

Query: 377 PIKLLWSLCSSEVEDGEKRAFHFGQPIPGAAINKLQ--------YESEQTFKEAGLANSM 222
           P+ + W L  + V+D E+R F  G  +  AA++ LQ           + T +EA  AN+ 
Sbjct: 60  PVHVYWLLDGAPVQDTERR-FAQGSSLSFAAVDPLQDSGTFQCVARDDVTGEEARSANAS 118

Query: 221 INLLWD*AGP 192
            N+ W  AGP
Sbjct: 119 FNIKWIEAGP 128



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>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 214 RLIIELASPASLKVCSLSYCSLLMAAPGMGWPKWKARF 327
           R+ I +  P +LK C   YC    A     W KWK RF
Sbjct: 478 RIAIRVEKPPNLKYCGYCYCIGRNA-----WKKWKKRF 510



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>TA2R9_PANTR (Q646C6) Taste receptor type 2 member 9 (T2R9)|
          Length = 312

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 SMINLLWD*AGPSHLWWASCIACCFFARI 141
           S++N++W  A  S LW+ SC++  +  +I
Sbjct: 83  SIVNVVWTFANNSSLWFTSCLSIFYLLKI 111



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>TA2R9_HUMAN (Q9NYW1) Taste receptor type 2 member 9 (T2R9) (Taste receptor|
           family B member 6) (TRB6)
          Length = 312

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 SMINLLWD*AGPSHLWWASCIACCFFARI 141
           S++N++W  A  S LW+ SC++  +  +I
Sbjct: 83  SIVNVVWTFANNSSLWFTSCLSIFYLLKI 111



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>OXA1L_HUMAN (Q15070) Inner membrane protein OXA1L, mitochondrial precursor|
           (Oxidase assembly 1-like protein) (OXA1-like protein)
           (OXA1Hs) (Hsa)
          Length = 435

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -1

Query: 293 GAAINKLQYESEQTFKEAGLAN-SMINLLWD*AGPSHL-----WWASCIACCFFAR--IY 138
           G   + +Q  +EQ+F E GL + + + L+ +     H+     WW +  AC  FAR  I+
Sbjct: 97  GETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIF 156

Query: 137 *LIV 126
            LIV
Sbjct: 157 PLIV 160



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>STAG3_HUMAN (Q9UJ98) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3) (SCC3|
            homolog 3)
          Length = 1225

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -1

Query: 365  LWSLCSSEVEDGEKRAFHFGQPIPGAAINKL----QYESEQTFKEAGLANSMINL 213
            LW L   E EDG +  F  GQP+ G   ++      +++       GL N ++ L
Sbjct: 1119 LWGLKEMEEEDGSELDFAQGQPVAGTERSRFLGPQYFQTPHNPSGPGLGNQLMRL 1173



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>NPB_BOVIN (Q8MJV4) Neuropeptide B precursor (Preproprotein L7) (bPPL7)|
           [Contains: Neuropeptide B-29 (NPB29) (L7C)]
          Length = 122

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 229 LASPASLKVCSLSYCSLLMAAPGMGWPK 312
           +A PA L   +L+ C LL+A+PG+ W K
Sbjct: 1   MAGPAMLVAAALALC-LLLASPGLAWYK 27



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>TA2R9_PONPY (Q645V9) Taste receptor type 2 member 9 (T2R9)|
          Length = 312

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 SMINLLWD*AGPSHLWWASCIACCFFARI 141
           S+++++W  A  S LW+ SC++  +  +I
Sbjct: 83  SIVBIVWTFANNSSLWFTSCLSIFYLLKI 111



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>INCC1_ECOLI (Q52312) Protein incC|
          Length = 358

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +3

Query: 180 PKMRWAGLVPQEVDHR----VXXXXXXXXXXXXXXXXXXXRARDGLAEVEGPLLPVLHLR 347
           PK+R+ G+VP +VD R    V                    ARD +AE  G  +PV  ++
Sbjct: 273 PKLRFLGMVPNKVDARKPRHVNNLATLQQAYPQLILPFSIGARDSIAEALGEQMPVWKIK 332



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>SLU7_MAGGR (Q51LA6) Pre-mRNA-splicing factor SLU7|
          Length = 474

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 301 GWPKWKARFSPSSTSEE--HNDHSSLMGSVWRKFLW 402
           G PK  AR   S   E+  HN+H+S+ GS W  F W
Sbjct: 333 GGPKGVAR---SKYKEDIFHNNHTSVWGSWWSDFKW 365


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,149,237
Number of Sequences: 219361
Number of extensions: 1268961
Number of successful extensions: 4120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4119
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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